View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21382_low_8 (Length: 399)
Name: NF21382_low_8
Description: NF21382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21382_low_8 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 18 - 399
Target Start/End: Original strand, 26260615 - 26260996
Alignment:
| Q |
18 |
atacggtgagccactattccccttgcacctcttgaatctttgagcactcgacatttgatcttcctttgattgttgacacgacgtcaattgatgatgaaca |
117 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26260615 |
atacggtgagccactatttcccttgcacctcttgaatctttgagcactcgacatttgatcttcctttgattgttgacacgacgtcaattgatgatgaaca |
26260714 |
T |
|
| Q |
118 |
agttgaatgaagaaaaaccccatttttcaattggaggttaatgaacttggtctttcatttagctttcaattgcctccaatggcgaaaccctagagaatca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26260715 |
agttgaatgaagaaaaaccccatttttcaattggaggttaatgaacttggtctttcatttagctttcaattgcctccaatggcgaaaccctagagaatca |
26260814 |
T |
|
| Q |
218 |
cactctaacacacaaatatttccgtatagaaaataactcaaagttctcaaaatcaatatcgttttctaagatttttgaaagagtataaggtggaagttgg |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26260815 |
cactctaacacacaaatatttccgtatagaaaataactcaaagttctcaaaatcattatcgttttctaagatttttgaaagagtataaggtggaagttgg |
26260914 |
T |
|
| Q |
318 |
ctgtttgagaaattagagtgtgaaaaattgaatgtaaaagatagtgttatgttacttatatagttttttggaaaatagtaaa |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26260915 |
ctgtttgagaaattagagtgtgaaaaattgaatgtaaaagatagtgttatgttacttatatagttttttggaaaatagtaaa |
26260996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University