View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21382_low_9 (Length: 391)
Name: NF21382_low_9
Description: NF21382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21382_low_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-165; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 15 - 383
Target Start/End: Complemental strand, 14179062 - 14178693
Alignment:
| Q |
15 |
atcaattgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcacagcggtagcnnnnnnnn--- |
111 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
14179062 |
atcagttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcaataaaaaaaa |
14178963 |
T |
|
| Q |
112 |
tgaacaccaatatttaacgtggaaaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaata |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14178962 |
tgaacaccaatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaata |
14178863 |
T |
|
| Q |
212 |
ttctctccactctctctcacacacacaagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagtt |
311 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
14178862 |
ttctctccactctctc--acacacacaagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattattttatagcacctagaagtt |
14178765 |
T |
|
| Q |
312 |
atagagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctc |
383 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
14178764 |
atagagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctc |
14178693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 20 - 383
Target Start/End: Complemental strand, 14174303 - 14173939
Alignment:
| Q |
20 |
ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcacagcggtagcnnnnnnnn---tgaac |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||| |
|
|
| T |
14174303 |
ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagtgataaaaaaaatgaac |
14174204 |
T |
|
| Q |
117 |
accaatatttaacgtggaaaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14174203 |
accaatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctc |
14174104 |
T |
|
| Q |
217 |
tccactctctctcacacacacaagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttataga |
316 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
14174103 |
tccactctctc--acacacacaagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattattttatagcacctagaagttataga |
14174006 |
T |
|
| Q |
317 |
gatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctc |
383 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
14174005 |
gatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctc |
14173939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 20 - 383
Target Start/End: Original strand, 28611567 - 28611931
Alignment:
| Q |
20 |
ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcacagcggtagcnnnnnnnn---tgaac |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||| |
|
|
| T |
28611567 |
ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcgataaaaaaaatgaac |
28611666 |
T |
|
| Q |
117 |
accaatatttaacgtggaaaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctc |
216 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28611667 |
accaatatttaacgtgaaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctc |
28611766 |
T |
|
| Q |
217 |
tccactctctctcacacacacaagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttataga |
316 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
28611767 |
tccactct--ctcacacacacaagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattattttatagcacctagaagttataga |
28611864 |
T |
|
| Q |
317 |
gatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctc |
383 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
28611865 |
gatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctc |
28611931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 19 - 383
Target Start/End: Original strand, 28606804 - 28607169
Alignment:
| Q |
19 |
attgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcacagcggtagcnnnnnnnn---tgaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| | || |
|
|
| T |
28606804 |
attgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcgataaaaaaaattaa |
28606903 |
T |
|
| Q |
116 |
caccaatatttaacgtggaaaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattct |
215 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28606904 |
caccaatatttaacgtgaaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattct |
28607003 |
T |
|
| Q |
216 |
ctccactctctctcacacacacaagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatag |
315 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
28607004 |
ctccactct--ctcacacacacaagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattattttatagcacctagaagttatag |
28607101 |
T |
|
| Q |
316 |
agatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctc |
383 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
28607102 |
agatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctc |
28607169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 21 - 383
Target Start/End: Complemental strand, 44161949 - 44161588
Alignment:
| Q |
21 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcacagcggtagcnnnnnnnn---tgaaca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
44161949 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcgataaaaaaaatgaaca |
44161850 |
T |
|
| Q |
118 |
ccaatatttaacgtggaaaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctct |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
44161849 |
ccaatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaat--tctct |
44161752 |
T |
|
| Q |
218 |
ccactctctctcacacacacaagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagag |
317 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
44161751 |
ccactctctt--acacacacaagagatacaatatagtgtttcccgtaagacctacttctattctaatgctattattttatagcacctagaagttatagag |
44161654 |
T |
|
| Q |
318 |
atgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctc |
383 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
44161653 |
atgatacccacccggtgtatttttcccacactctctggatttactcaacactctattattcctctc |
44161588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 21 - 377
Target Start/End: Complemental strand, 11104829 - 11104477
Alignment:
| Q |
21 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcacagcggtagcnnnnnnnntgaacacca |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||| |
|
|
| T |
11104829 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagctgtagcgataaaaatgaacacca |
11104730 |
T |
|
| Q |
121 |
atatttaacgtggaaaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctcca |
220 |
Q |
| |
|
||||||||| | ||||| ||||||||| ||||| || ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
11104729 |
atatttaacatagaaaatcctctaatatcgagggtaa-accacgggacaaactccgaaaaatattccaccatatctaagaatattacaatattctctcca |
11104631 |
T |
|
| Q |
221 |
ctctctctcacacacacaagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatg |
320 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||||||||||||| ||| |||||| ||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
11104630 |
ctctcttacacaca---aagagatacaatatagtgtttcccgtgagacccactcctattcaaatgctattattttataacacctagaagttatagagatg |
11104534 |
T |
|
| Q |
321 |
atacccacccggtgtatttttcccacactctctggatttactcaacactctattttt |
377 |
Q |
| |
|
||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
11104533 |
atatccacccggtgtatttttcctacactctctggatttactcaacactctattttt |
11104477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 19 - 323
Target Start/End: Original strand, 48826700 - 48827000
Alignment:
| Q |
19 |
attgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcacagcggtagcnnnnnnnnt-gaaca |
117 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||||||||||| |||||| ||| |||||||||||||||||| |||||||||| ||||| |
|
|
| T |
48826700 |
attgttgggatcgacgagcttaacgcaattgtaaattaaaatttcaaaattcaa--gagattggatcttgcagcgcagcggtagcgatagaaaaagaaca |
48826797 |
T |
|
| Q |
118 |
ccaatatttaacgtggaaaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctct |
217 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48826798 |
ccaatatttaacgtggaaaatcctctaataccgagggaaaaatcacgggacaa-ctccgaaaaatattccactatattaaagaatattacaatattctct |
48826896 |
T |
|
| Q |
218 |
ccactctctctcacacacacaagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagag |
317 |
Q |
| |
|
| |||||| |||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
48826897 |
tcgctctctt--acacacacaagagatacaatatagtgtttcccgtgagattcactcctatttgaatgctattattttatagcacctagaagttatagag |
48826994 |
T |
|
| Q |
318 |
atgata |
323 |
Q |
| |
|
|||||| |
|
|
| T |
48826995 |
atgata |
48827000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 48 - 218
Target Start/End: Original strand, 48708086 - 48708256
Alignment:
| Q |
48 |
tgtaaattaaaattccaaaatccaaaagagattggatcttgcagcacagcggtagcnnnnnnnntgaacaccaatatttaacgtggaaaaccctctaata |
147 |
Q |
| |
|
||||||||||||||||||||| |||||| |||| ||||| || | ||| ||| || | || ||||||||||||| || ||||| || ||||| |
|
|
| T |
48708086 |
tgtaaattaaaattccaaaatataaaagaaattgaatcttacaacgcagtggtggcgataaaattaaataccaatatttaacatgaaaaactctataata |
48708185 |
T |
|
| Q |
148 |
ctgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc |
218 |
Q |
| |
|
|| || |||| |||||| |||||||||| ||||||||| || ||||||||| ||||||||||||||||||| |
|
|
| T |
48708186 |
ctaagagaaaaaccacgtgacaaactccaaaaaatatttcattatattaaaaaatattacaatattctctc |
48708256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 133 - 292
Target Start/End: Original strand, 24726288 - 24726442
Alignment:
| Q |
133 |
gaaaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactctctctcaca |
232 |
Q |
| |
|
||||||| ||||||| ||||||| ||||| ||||||||| ||||||||||||| |||||||||||| || | ||||||||||||| ||||| | |
|
|
| T |
24726288 |
gaaaaccatctaatatcaagggaaaagccacgagacaaactctgaaaaatattccattatattaaagaacataataatattctctccattctct----ta |
24726383 |
T |
|
| Q |
233 |
cacacaagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattat |
292 |
Q |
| |
|
| ||| |||||||| |||| ||||| |||||||||| ||| |||||| |||| |||||| |
|
|
| T |
24726384 |
ccgacacgagatacactatattgttttccgtgagacc-actcctattcaaatgttattat |
24726442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 20 - 383
Target Start/End: Complemental strand, 12931041 - 12930678
Alignment:
| Q |
20 |
ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcacagcggtagcnnnnnnnn--tgaaca |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||| |
|
|
| T |
12931041 |
ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcgataaaaaaatgaaca |
12930942 |
T |
|
| Q |
118 |
ccaatatttaacgtggaaaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctct |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12930941 |
ccaatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctct |
12930842 |
T |
|
| Q |
218 |
ccactctctctcacacacacaagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagag |
317 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
12930841 |
ccactctctc--acacacacaagagatacaatatagtgtttcccgtgagacctacttttattctaatgctattattttatagcacctagaagttatagag |
12930744 |
T |
|
| Q |
318 |
atgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctc |
383 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
12930743 |
atgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctc |
12930678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 21 - 383
Target Start/End: Complemental strand, 12935786 - 12935424
Alignment:
| Q |
21 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcacagcggtagcnnnnnnnn--tgaacac |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||| |||||||||| ||||||| |
|
|
| T |
12935786 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaattcaaaagaaactggatcttgcagcgcagcggtagcgataaaaaaatgaacac |
12935687 |
T |
|
| Q |
119 |
caatatttaacgtggaaaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12935686 |
caatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc |
12935587 |
T |
|
| Q |
219 |
cactctctctcacacacacaagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagaga |
318 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
12935586 |
cactctctc--acacacacaagagatacaatatagtgtttcccgtgagacctacttttactctaatgctattattttatagcacctagaagttatagaga |
12935489 |
T |
|
| Q |
319 |
tgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctc |
383 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
12935488 |
tgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctc |
12935424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 114 - 234
Target Start/End: Original strand, 26504945 - 26505063
Alignment:
| Q |
114 |
aacaccaatatttaacgtggaaaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatatt |
213 |
Q |
| |
|
|||| |||||||||||||| || ||| ||||||| ||| ||| ||||| | ||||||||| |||||||||| |||||| |||| |||||||||||||| |
|
|
| T |
26504945 |
aacatcaatatttaacgtg-aataccgtctaataacaaggcaaa-accacagtacaaactccaaaaaatattcaactataataaaaaatattacaatatt |
26505042 |
T |
|
| Q |
214 |
ctctccactctctctcacaca |
234 |
Q |
| |
|
|| || ||||||| ||||||| |
|
|
| T |
26505043 |
ctttcaactctctttcacaca |
26505063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 224
Target Start/End: Complemental strand, 15589060 - 15588948
Alignment:
| Q |
112 |
tgaacaccaatatttaacgtggaaaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaata |
211 |
Q |
| |
|
|||||| ||||||||| || ||||||||||| || |||| |||| | || | ||||||||| ||||||||| |||| ||| ||| |||||||||| | |
|
|
| T |
15589060 |
tgaacatcaatatttattttgaaaaaccctctattaatgagagaaaaatcaagtgacaaactctaaaaaatatttcactttatcaaacaatattacaaca |
15588961 |
T |
|
| Q |
212 |
ttctctccactct |
224 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
15588960 |
ttttctccactct |
15588948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 74
Target Start/End: Original strand, 26504850 - 26504895
Alignment:
| Q |
29 |
tcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaa |
74 |
Q |
| |
|
|||||||| |||| | ||||||||||||||||| |||||||||||| |
|
|
| T |
26504850 |
tcgacgagtttaatggaagtgtaaattaaaatttcaaaatccaaaa |
26504895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 21 - 383
Target Start/End: Complemental strand, 34907503 - 34907141
Alignment:
| Q |
21 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcacagcggtagcnnnnnnnn--tgaacac |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||| |
|
|
| T |
34907503 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcgataaaaaaatgaacac |
34907404 |
T |
|
| Q |
119 |
caatatttaacgtggaaaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34907403 |
caatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc |
34907304 |
T |
|
| Q |
219 |
cactctctctcacacacacaagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagaga |
318 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
34907303 |
cactctctc--acacacacaagagatacaatatagtgtttcccgtgagacctacttttattctaatgctattattttatagcacctagaagttatagaga |
34907206 |
T |
|
| Q |
319 |
tgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctc |
383 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
34907205 |
tgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctc |
34907141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 21 - 383
Target Start/End: Original strand, 37040426 - 37040789
Alignment:
| Q |
21 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcacagcggtagcnnnnnnnn---tgaaca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||| |||||| |
|
|
| T |
37040426 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaaagactggatcttgcagcgcagcggtagcgataaaaaaaatgaaca |
37040525 |
T |
|
| Q |
118 |
ccaatatttaacgtggaaaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctct |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
37040526 |
ccaatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattttct |
37040625 |
T |
|
| Q |
218 |
ccactctctctcacacacacaagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagag |
317 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
37040626 |
ccactct--ctcacacacacaagagatacaatatagtgttttccgtgagacctacttctattctaatgctattattttatagcacctagaagttatagag |
37040723 |
T |
|
| Q |
318 |
atgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctc |
383 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
37040724 |
atgatacccacccgatgtatttttcccacactctctggatttactcaacactctatttttcctctc |
37040789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 20 - 374
Target Start/End: Complemental strand, 15290595 - 15290243
Alignment:
| Q |
20 |
ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaa-gagattggatcttgcagcacagcggtagcnnnnnnnn---tgaa |
115 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||| |||| |||| |||| |
|
|
| T |
15290595 |
ttgttgggctcgacgagcttaacgcaattgtaaattaaaatttcaaaatccaaaaagagattggatcttgcagcgcagccttagcgataaaaaaaatgaa |
15290496 |
T |
|
| Q |
116 |
caccaatatttaacgtggaaaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattct |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| | | ||||||||||||||||| ||| || |||||||||||| ||||||||||||||||||| |
|
|
| T |
15290495 |
caccaatatttaacgtggaaaaccctctaataccgaggtataaaccacgggacaaactccaaaagattttccactatatttaagaatattacaatattct |
15290396 |
T |
|
| Q |
216 |
ctccactctctctcacacacacaagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatag |
315 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||||||||||| |||||||||| ||| |||||| |||||||| |||| |||||||||||||||||| |
|
|
| T |
15290395 |
ctccact--ctcttacacacacaagagatacaatatagtgttt-ccgtgagacccactcctattcgaatgctat--tatttcagcacctagaagttatag |
15290301 |
T |
|
| Q |
316 |
agatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatt |
374 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||| |
|
|
| T |
15290300 |
agatgatacccacccggtgtattttt-ccacactttctggatttagtcaacactctatt |
15290243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 21 - 324
Target Start/End: Complemental strand, 12099361 - 12099060
Alignment:
| Q |
21 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcacagcggtagcnnnnnnnntgaacacca |
120 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||| || || |||| |||| | || |
|
|
| T |
12099361 |
tgttgggctcgacgagtttaacgcgagtgtaaattaaaattccaaaatccaaaagagatatgatcttgcagctcaccgatagcgataaaaatgaaaagca |
12099262 |
T |
|
| Q |
121 |
atatttaacgtggaaaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctcca |
220 |
Q |
| |
|
|||||| ||||| ||||||||||||| || ||||| |||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
12099261 |
atattttacgtgaaaaaccctctaatgacgaaggaaaaaccaagggacaaactccgaaaaaatttcaactatattaaagaatattacaatattctctcca |
12099162 |
T |
|
| Q |
221 |
ctctctctcacacacacaagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatg |
320 |
Q |
| |
|
|| |||| |||| ||||||||| ||||||| ||||||| ||||||| ||| |||||| |||| |||||| ||||| |||||| |||||||||||||| |
|
|
| T |
12099161 |
ct--ctcttacacgcacaagagacacaatattgtgtttctagtgagactcactcctattcaaatgatattattttataacacctaaaagttatagagatg |
12099064 |
T |
|
| Q |
321 |
atac |
324 |
Q |
| |
|
|||| |
|
|
| T |
12099063 |
atac |
12099060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 169 - 379
Target Start/End: Complemental strand, 12082227 - 12082021
Alignment:
| Q |
169 |
aaactccgaaaaatattccactatattaaagaatattacaatattctctccactctctctcacacacacaagagatacaatatagtgtttcccgtgagac |
268 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||| |||| | |||||||||||||||||||||| |||||| |
|
|
| T |
12082227 |
aaactccaaaaaatattccactatattaa-gaatattacaatattttctccactctctt--acacggaaaagagatacaatatagtgtttctaatgagac |
12082131 |
T |
|
| Q |
269 |
ctacttctattctaatgctattatattatagcacctagaagttatagagatgatacccacccggtgtatttttcccacactctctggatttactcaacac |
368 |
Q |
| |
|
|| |||||| |||| |||||| ||||||| |||||||||||||||||| ||||| ||||| | |||||||||| | | ||||||||||| |||||| |
|
|
| T |
12082130 |
tcgctcctattcaaatgttattattttatagcgcctagaagttatagagataatacctacccgatatatttttccc-ctttttctggatttacccaacac |
12082032 |
T |
|
| Q |
369 |
tctatttttct |
379 |
Q |
| |
|
|||| |||||| |
|
|
| T |
12082031 |
tctaattttct |
12082021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 2757370 - 2757448
Alignment:
| Q |
178 |
aaaatattccactatattaaagaatattacaatattctctccactctctctcacacacacaagagatacaatatagtgttt |
258 |
Q |
| |
|
|||||||||||||||||| || |||||| || ||||||||||||||||| | ||||| |||||||||||||||||||||| |
|
|
| T |
2757370 |
aaaatattccactatatttaaaaatattgcactattctctccactctcttt--cacactcaagagatacaatatagtgttt |
2757448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 103
Target Start/End: Complemental strand, 12084751 - 12084669
Alignment:
| Q |
21 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcacagcggtagc |
103 |
Q |
| |
|
|||||||||| ||||||||||| | || ||||||||||||| |||||||||| ||| ||||||||||| ||| || ||||||| |
|
|
| T |
12084751 |
tgttgggctcaacgagcttaacacgagggtaaattaaaatttcaaaatccaatagacattggatcttgtagcgcaacggtagc |
12084669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 81
Target Start/End: Original strand, 2757207 - 2757273
Alignment:
| Q |
15 |
atcaattgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattg |
81 |
Q |
| |
|
|||| |||||| | || ||||||||| ||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
2757207 |
atcacttgttgtgttcaacgagcttattacaagtgtaaattaaaattccaaaattcaaaagaaattg |
2757273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 21 - 369
Target Start/End: Original strand, 29106878 - 29107224
Alignment:
| Q |
21 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcacagcggtagcnnnnnnnntgaacacca |
120 |
Q |
| |
|
||||||| |||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
29106878 |
tgttgggatcgaggagcttaatgcaagtgtaaattaaaattccaaaatccaaaaaagattggatcttgcagcgcagcggtagcgttaaaaatgaacacca |
29106977 |
T |
|
| Q |
121 |
atatttaacgtggaaaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctcca |
220 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29106978 |
atatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctcca |
29107077 |
T |
|
| Q |
221 |
ctctctctcacacacacaagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatg |
320 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||| |
|
|
| T |
29107078 |
--ctctcttacacacacaagagatacaa-atagtgtttcccgtgagacctacttctattctaatgctattattttttagcacctagaagttataaagatg |
29107174 |
T |
|
| Q |
321 |
ata-cccacccggtgtatttttcccacactctctggatttactcaacact |
369 |
Q |
| |
|
||| ||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29107175 |
ataccccacccaatgtatttttcccacactctctggatttactcaacact |
29107224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 20 - 377
Target Start/End: Original strand, 42910992 - 42911346
Alignment:
| Q |
20 |
ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcacagcggtagcnnnnnnnntgaacacc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| |||||| | | |||||||| |
|
|
| T |
42910992 |
ttgttgggctcgacgagcttaacgcaagtggaaattaaaattttaaaatccaaaagagattagatcttgcagcgcagcggcaacgataaaaatgaacacc |
42911091 |
T |
|
| Q |
120 |
aatatttaacgtggaaaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctcc |
219 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
42911092 |
aatatttaacatggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaa-tattccactatatttaagaatattacaatattctctcc |
42911190 |
T |
|
| Q |
220 |
actctctctcacacacacaagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagat |
319 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
42911191 |
actct--ctcacacacacaaaagatacaatatagtgtttcccttgagacctacttctattctaatgctattattttatagcaccaagaagttatagagat |
42911288 |
T |
|
| Q |
320 |
gatacccacccggtgtatttttcccacactctctggatttactcaacactctattttt |
377 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
42911289 |
gatacccacccagtgtattttttccacactctctggatttactcaacactctattttt |
42911346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 113 - 203
Target Start/End: Original strand, 38997230 - 38997320
Alignment:
| Q |
113 |
gaacaccaatatttaacgtggaaaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaata |
203 |
Q |
| |
|
||||| |||||||| |||| ||||||||||||||| || |||| || |||||||||||||| ||||||| |||| |||||||||||||| |
|
|
| T |
38997230 |
gaacagcaatattttacgtcgaaaaccctctaatatcgaacgaaaaactacgggacaaactccaaaaaataatccattatattaaagaata |
38997320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 38994698 - 38994779
Alignment:
| Q |
20 |
ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcacagcggta |
101 |
Q |
| |
|
|||||||||| ||||| ||||| || |||||||||||||||||||||| ||||| | |||||||||||||| |||||||| |
|
|
| T |
38994698 |
ttgttgggcttgacgatcttaatgctagtgtaaattaaaattccaaaacccaaacaaaattggatcttgcagtgcagcggta |
38994779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 38997137 - 38997193
Alignment:
| Q |
20 |
ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaga |
76 |
Q |
| |
|
|||||||| |||| | |||||| || |||||||||||||||||| ||||||||||| |
|
|
| T |
38997137 |
ttgttgggttcgaagggcttaatgcgggtgtaaattaaaattccagaatccaaaaga |
38997193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 383
Target Start/End: Complemental strand, 8539550 - 8539185
Alignment:
| Q |
19 |
attgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcacagcggtagcnnnnnnnn-tgaaca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||| | |||||| |
|
|
| T |
8539550 |
attgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaattctaaaagagattggatcttgcagcgcagcggtaacaataaaaaatgaaca |
8539451 |
T |
|
| Q |
118 |
ccaatatttaacgtggaaaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctct |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
8539450 |
tcaatatttaacgtggaaaaccctctaataccgagggaaaaatcacgggacaaactccgaaagatattccactatatttaagaatattacaatattatct |
8539351 |
T |
|
| Q |
218 |
ccactctctctcacacacacaagagatacaa---tatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttata |
314 |
Q |
| |
|
||||| |||| ||||||||||||||||||| |||||||||| |||||||||| ||| |||||| | ||||||||| ||| |||||||| |||||||| |
|
|
| T |
8539350 |
ccact--ctcttacacacacaagagatacaatattatagtgttt-ccgtgagacccactcctattcgattgctattattttacagcacctaaaagttata |
8539254 |
T |
|
| Q |
315 |
gagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctc |
383 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||||||| ||||||| |||||| |||||||| |||| |
|
|
| T |
8539253 |
gagatgatacccatccgatgtatttttcccacactctctgaatttactgaacactatatttttcctctc |
8539185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 99; Significance: 9e-49; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 240 - 378
Target Start/End: Complemental strand, 51302306 - 51302168
Alignment:
| Q |
240 |
gagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatgatacccacccggtgtattt |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| |||||| ||||| ||| | ||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
51302306 |
gagatacaatatagtgtttcccgtgagacccactcctattcgaatgcaattgttttatagcacctagaagttatagagatgattcccacccggtgtattt |
51302207 |
T |
|
| Q |
340 |
ttcccacactctctggatttactcaacactctatttttc |
378 |
Q |
| |
|
| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
51302206 |
tatccacactctctggatttactcaatactctatttttc |
51302168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 20 - 103
Target Start/End: Complemental strand, 51303020 - 51302937
Alignment:
| Q |
20 |
ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcacagcggtagc |
103 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
51303020 |
ttgttgggatcgacgagcttaatgcaagtgtaaattaaaatttcaaaatccaaaacagattggatcttgcagcgcagcggtagc |
51302937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 112 - 148
Target Start/End: Complemental strand, 51302344 - 51302308
Alignment:
| Q |
112 |
tgaacaccaatatttaacgtggaaaaccctctaatac |
148 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51302344 |
tgaacaccaatatttaacgtggaaaaccctctaatac |
51302308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 8e-34; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 21 - 203
Target Start/End: Original strand, 2100199 - 2100379
Alignment:
| Q |
21 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattgga-tcttgcagcacagcggtagcnnnnnnnntgaacacc |
119 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||| || | |||||||||| || || |||||| | |
|
|
| T |
2100199 |
tgttgggctcgacgagcttaacacaagtgtaaattaaaattccaaaattcataagagatttgaattttgcagcacaacgataatgataaaattgaacatc |
2100298 |
T |
|
| Q |
120 |
aatatttaacgtggaaaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaata |
203 |
Q |
| |
|
||||||||| |||||||||||| ||||| |||| |||| || ||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
2100299 |
aatatttaaggtggaaaaccctttaataatgagcgaaaaac---ggggcaaactccgaaaaatattccactatattaaagaata |
2100379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 196 - 246
Target Start/End: Original strand, 2100723 - 2100771
Alignment:
| Q |
196 |
aaagaatattacaatattctctccactctctctcacacacacaagagatac |
246 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||| ||||||||||||| |
|
|
| T |
2100723 |
aaagaatattacaatattctctcca--ctctcttacatacacaagagatac |
2100771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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