View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21383_high_17 (Length: 278)

Name: NF21383_high_17
Description: NF21383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21383_high_17
NF21383_high_17
[»] chr7 (13 HSPs)
chr7 (18-259)||(4711582-4711823)
chr7 (18-244)||(4696700-4696926)
chr7 (20-256)||(4673050-4673286)
chr7 (18-244)||(4864281-4864510)
chr7 (18-256)||(4637204-4637442)
chr7 (20-164)||(4653935-4654079)
chr7 (18-256)||(4845522-4845760)
chr7 (26-247)||(4783353-4783574)
chr7 (26-247)||(4815782-4816003)
chr7 (20-250)||(4667294-4667521)
chr7 (110-166)||(4644144-4644200)
chr7 (20-166)||(4631364-4631513)
chr7 (21-82)||(4644216-4644277)
[»] chr4 (1 HSPs)
chr4 (43-184)||(18925280-18925418)


Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 259
Target Start/End: Original strand, 4711582 - 4711823
Alignment:
Q  18 aaaatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4711582 aaaatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctt 4711681  T
Q  118 tcattaacggaatcgaaattgtgtctatgccttcttttctctattacacggaccttaatgacccaaaataccttttgaaatcacttgactttgacaacac 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4711682 tcattaacggaatcgaaattgtgtctatgccttcttttctctattacacggaccttaatgacccaaaataccttttgaaatcacttgactttgacaacac 4711781  T
Q  218 ggaataccaaattcataacgacaaagctttggaaatggtata 259  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  4711782 ggaataccaaattcataacgacaaagctttggaaatggtata 4711823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 4696700 - 4696926
Alignment:
Q  18 aaaatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctt 117  Q
    |||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||| | ||||||||| || |||||||||||||||||||    
T  4696700 aaaatcaccaaagaatattgcattcaaaccaaaccaaatgagaagttaaacataactttcattcccagcaacataaaccagtcaaatccttattatgctt 4696799  T
Q  118 tcattaacggaatcgaaattgtgtctatgccttcttttctctattacacggaccttaatgacccaaaataccttttgaaatcacttgactttgacaacac 217  Q
    ||||||||||||| ||| ||||||| |||||||||||||||||||||||  |||| | |||||||||||| | ||||| |||||||||||| |||||||     
T  4696800 tcattaacggaatagaagttgtgtcaatgccttcttttctctattacacaaacctcagtgacccaaaatatcatttgatatcacttgacttagacaacag 4696899  T
Q  218 ggaataccaaattcataacgacaaagc 244  Q
    ||| |||||| ||| ||||||||||||    
T  4696900 ggactaccaagttcttaacgacaaagc 4696926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 20 - 256
Target Start/End: Complemental strand, 4673286 - 4673050
Alignment:
Q  20 aatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctttc 119  Q
    |||||||||||||| ||| || |||||||| || ||||||||||||| ||||| ||||||||||| || ||| ||  | ||||||  | | |||||||||    
T  4673286 aatcaccaaagaattttgtatccaaatcaagcccaatgagaagctaaacataaatttcattccaagcatcatgaacaaatcaaatgttaaatatgctttc 4673187  T
Q  120 attaacggaatcgaaattgtgtctatgccttcttttctctattacacggaccttaatgacccaaaataccttttgaaatcacttgactttgacaacacgg 219  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||  |||| | ||||||||| || | |||||||||||||||||| ||||||||||    
T  4673186 attaacggaatcgaaattgtgtcaatgccttcttttctctattacacaaacctcagtgacccaaattatcatttgaaatcacttgacttagacaacacgg 4673087  T
Q  220 aataccaaattcataacgacaaagctttggaaatggt 256  Q
    ||||||||||||||||||| |||||||||||||||||    
T  4673086 aataccaaattcataacgaaaaagctttggaaatggt 4673050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 4864510 - 4864281
Alignment:
Q  18 aaaatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattcca---aacaacataaatcattcaaatccttattatg 114  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    || || |||||||| ||||||||||||||||    
T  4864510 aaaatcaccaaagaatattgcattcaaatcaaatcaaatgagaagctaaacataactttcattccggccaataatataaatcaatcaaatccttattatg 4864411  T
Q  115 ctttcattaacggaatcgaaattgtgtctatgccttcttttctctattacacggaccttaatgacccaaaataccttttgaaatcacttgactttgacaa 214  Q
    | |||||||| ||||| ||| | |||||||||||||||||||| ||||||||  |||| ||||||||||||||   ||||||||||||||||||||||||    
T  4864410 ccttcattaatggaatagaagtcgtgtctatgccttcttttctatattacacaaacctcaatgacccaaaatattatttgaaatcacttgactttgacaa 4864311  T
Q  215 cacggaataccaaattcataacgacaaagc 244  Q
    |||| | |||||| ||| ||||||||||||    
T  4864310 cacgaactaccaagttcttaacgacaaagc 4864281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 4637442 - 4637204
Alignment:
Q  18 aaaatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctt 117  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||| ||| ||||||||||||||| |||| |||||| || |||||||||| ||||||||    
T  4637442 aaaatcaccaaagaatattgcatacaaatcaaaccaaatgaaaagttaaacataactttcattcctaacagcataaaccaatcaaatccttgttatgctt 4637343  T
Q  118 tcattaacggaatcgaaattgtgtctatgccttcttttctctattacacggaccttaatgacccaaaataccttttgaaatcacttgactttgacaacac 217  Q
    | |||||||| |||||| ||||||| |||||||||||||||||||||||  |||| ||||||||||| |||  ||||||| || ||||||  ||  ||||    
T  4637342 ttattaacgggatcgaagttgtgtcaatgccttcttttctctattacacaaacctcaatgacccaaattactatttgaaaccagttgactcagagtacac 4637243  T
Q  218 ggaataccaaattcataacgacaaagctttggaaatggt 256  Q
    |||||||| ||||||||| |||||||||||||| |||||    
T  4637242 ggaataccgaattcataaagacaaagctttggagatggt 4637204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 20 - 164
Target Start/End: Complemental strand, 4654079 - 4653935
Alignment:
Q  20 aatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctttc 119  Q
    ||||||||||||||||||||| ||| || |||| ||| ||||||||| ||||||||||||||| ||||||| ||| ||||||||||||||||||||||||    
T  4654079 aatcaccaaagaatattgcatccaagtccaaccgaataagaagctaaacataactttcattcccaacaacacaaaccattcaaatccttattatgctttc 4653980  T
Q  120 attaacggaatcgaaattgtgtctatgccttcttttctctattac 164  Q
    ||||| ||||| ||| |||||||||||||||||||||||||||||    
T  4653979 attaatggaattgaagttgtgtctatgccttcttttctctattac 4653935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 4845522 - 4845760
Alignment:
Q  18 aaaatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctt 117  Q
    ||||| |||||||||||||||||||| ||||||||||||| |||||||| |||||||||| |||| |||||||||||  | |  ||||||| ||||||||    
T  4845522 aaaattaccaaagaatattgcattcagatcaaaccaaatgggaagctaaacataactttctttccgaacaacataaacgaattgaatcctttttatgctt 4845621  T
Q  118 tcattaacggaatcgaaattgtgtctatgccttcttttctctattacacggaccttaatgacccaaaataccttttgaaatcacttgactttgacaacac 217  Q
    || |||||||||||||| ||||||| |||||||||||||||||||||||  |||   |||||  ||| ||   ||| |||| | ||| |||||||||||     
T  4845622 tcgttaacggaatcgaagttgtgtcgatgccttcttttctctattacacaaacccagatgacttaaattattatttcaaattaattggctttgacaacag 4845721  T
Q  218 ggaataccaaattcataacgacaaagctttggaaatggt 256  Q
     |||||| |||||| ||| || ||||||||||| |||||    
T  4845722 agaatacgaaattcgtaatgataaagctttggagatggt 4845760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 26 - 247
Target Start/End: Original strand, 4783353 - 4783574
Alignment:
Q  26 caaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctttcattaac 125  Q
    ||||||||||| ||| |||||||||||||| |||||||||| ||||||||||||||| ||||||| ||| || |  | ||||  ||||||||||||||||    
T  4783353 caaagaatattccatccaaatcaaaccaaacgagaagctaaacataactttcattcccaacaacacaaaccaattgattcctagttatgctttcattaac 4783452  T
Q  126 ggaatcgaaattgtgtctatgccttcttttctctattacacggaccttaatgacccaaaataccttttgaaatcacttgactttgacaacacggaatacc 225  Q
    ||||||||| |||||||||||||||||||||||||||||||  |||| | ||||| | | || ||| | || | || ||  |||||||||||||| || |    
T  4783453 ggaatcgaagttgtgtctatgccttcttttctctattacacaaacctcagtgaccaagattatcttatcaatttacctggttttgacaacacggattatc 4783552  T
Q  226 aaattcataacgacaaagcttt 247  Q
    || ||| |||| ||||||||||    
T  4783553 aagttcttaactacaaagcttt 4783574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 26 - 247
Target Start/End: Original strand, 4815782 - 4816003
Alignment:
Q  26 caaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctttcattaac 125  Q
    ||||||||||| ||| |||||||||||||| |||||||||| ||||||||||||||| ||||||| ||| || |  | ||||  ||||||||||||||||    
T  4815782 caaagaatattccatccaaatcaaaccaaacgagaagctaaacataactttcattcccaacaacacaaaccaattgagtcctagttatgctttcattaac 4815881  T
Q  126 ggaatcgaaattgtgtctatgccttcttttctctattacacggaccttaatgacccaaaataccttttgaaatcacttgactttgacaacacggaatacc 225  Q
    ||||||||| |||||||||||||||||||||||||||||||  |||| | ||||| | | || | | | || | || ||  | |||||||||||||||||    
T  4815882 ggaatcgaagttgtgtctatgccttcttttctctattacacaaacctcagtgaccaagattatcgtatcaagttacctggttctgacaacacggaatacc 4815981  T
Q  226 aaattcataacgacaaagcttt 247  Q
    || ||| |||| ||||||||||    
T  4815982 aagttcttaacaacaaagcttt 4816003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 250
Target Start/End: Complemental strand, 4667521 - 4667294
Alignment:
Q  20 aatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctttc 119  Q
    ||||||||||||||||||||| || | ||||| |   ||||| |||  | ||||||||||||| || |||| ||| || | |||| ||| |   ||||||    
T  4667521 aatcaccaaagaatattgcatccataccaaacaaggggagaaactagacgtaactttcattcccaaaaacacaaaccaattaaatgctttt---gctttc 4667425  T
Q  120 attaacggaatcgaaattgtgtctatgccttcttttctctattacacggaccttaatgacccaaaataccttttgaaatcacttgactttgacaacacgg 219  Q
    || |||||||| || |||||||||||||| |||||||||||||||||  |||| | ||||||||| || | ||||| || |||||||||||||| ||  |    
T  4667424 atcaacggaattgagattgtgtctatgccgtcttttctctattacacaaacctcagtgacccaaattatcatttgacattacttgactttgacagcaatg 4667325  T
Q  220 aataccaaattcataacgacaaagctttgga 250  Q
    ||||||| |||| |||| |||||||| ||||    
T  4667324 aataccatattcctaacaacaaagctatgga 4667294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 110 - 166
Target Start/End: Complemental strand, 4644200 - 4644144
Alignment:
Q  110 ttatgctttcattaacggaatcgaaattgtgtctatgccttcttttctctattacac 166  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  4644200 ttatgctttcattaacggaatcgaagttgtgtctatgccttcttttctctattacac 4644144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 166
Target Start/End: Complemental strand, 4631513 - 4631364
Alignment:
Q  20 aatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattccaaacaa------cataaatcattcaaatccttattat 113  Q
    ||||||||||||||||||||| |||||    |||||||||||||||| ||||||||||||||| || ||      || ||| || | ||||  ||  ||     
T  4631513 aatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcccaaaaatacaaacacaaaccaattaaatggtt--ta- 4631417  T
Q  114 gctttcattaacggaatcgaaattgtgtctatgccttcttttctctattacac 166  Q
    |||||||| |||||||| || ||||||||||||||||||||||||||||||||    
T  4631416 gctttcatcaacggaattgagattgtgtctatgccttcttttctctattacac 4631364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 4644277 - 4644216
Alignment:
Q  21 atcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattcc 82  Q
    |||| |||||| |||||||| ||||| ||| ||||||||||||||| |||||||||||||||    
T  4644277 atcatcaaagagtattgcatccaaattaaaacaaatgagaagctaaacataactttcattcc 4644216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 43 - 184
Target Start/End: Original strand, 18925280 - 18925418
Alignment:
Q  43 aaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctttcattaacggaatcgaaattgtgtc 142  Q
    |||| ||||||| ||||||| |||  ||||||||||||||||||| |||||||||  ||||  |   |||||||||||| |||||||| || || |||||    
T  18925280 aaatgaaaccaactgagaagttaaatataactttcattccaaacaccataaatcaaccaaaggc---ttatgctttcatcaacggaattgagatcgtgtc 18925376  T
Q  143 tatgccttcttttctctattacacggaccttaatgacccaaa 184  Q
     |||||||||||||||||||||||  |||| |||||| ||||    
T  18925377 catgccttcttttctctattacacaaacctcaatgactcaaa 18925418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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