View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21383_high_2 (Length: 629)
Name: NF21383_high_2
Description: NF21383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21383_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 22 - 619
Target Start/End: Complemental strand, 39631995 - 39631402
Alignment:
| Q |
22 |
aggtgaagataaagccaagtcagtatcaacctaccaataaaagtaaaggacacctggctttgttttctcaaaatatagataggatttaggacatacataa |
121 |
Q |
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| T |
39631995 |
aggtgaagataaagccaagtcagtatcaacctaccaataaaagtaaaggacacctggctttgttttctcaaaatatagataggatttaggacaaacataa |
39631896 |
T |
|
| Q |
122 |
tcaagtaaattaaattaaattaaatatgttaagcttttattagcgnnnnnnntatgttaagctctttattttatttaatgtcaactatcaaaatccacta |
221 |
Q |
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|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39631895 |
tcaagtaaattaaattaaat-----atgttaagcttttattagcgaaaaaaatatgttaagctctttattttatttaatgtcaactatcaaaatccacta |
39631801 |
T |
|
| Q |
222 |
acaaaattacaatttatgcaacnnnnnnnngttaggtataattgctaaaaatagattaacatttcacttgaatacaaaatcattgttaatgcgatgactt |
321 |
Q |
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||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
39631800 |
acaaaattacaatttatacaacaaaaaaaagttaggtataattgctaaaaatagattaacatttcacttgaatacaaaatcattgttaatgtgatgactt |
39631701 |
T |
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| Q |
322 |
tgttgatcatgcccacagaatattatgccactagaaatattnnnnnnnntaacaatttgtttgaatgagctttaacatttcggggagattaagatgccac |
421 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39631700 |
tgttgatcatgcccacagaatattatgccactagaaatattaaaaaaaataacaatttgtttgaatgagctttaacatttcggggagattaagatgccac |
39631601 |
T |
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| Q |
422 |
gtacgtttaatcaataaacaaaagatgatcagccatcagta-tttaatcaattatagtattaagattagttgtacataccttaagttatgagttaaacaa |
520 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39631600 |
gtacgtttaatcaataaacaaaagatgatcagccatcagtaatttaatcaattatagtattaagattagttgtacataccttaagttatgagttaaacaa |
39631501 |
T |
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| Q |
521 |
gtttcaaaggcatatattgtcaaggttttggaaatcttttgctccctttttaattctgaataagtcagaaagatttgcgtggtatcataattcattcat |
619 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
39631500 |
gtttcaaaggcatatattgtcaaggttttggaaatcttttgctccctttttaattctgaataagtcagaaagatttgagtggtatcataattcattcat |
39631402 |
T |
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