View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21383_high_21 (Length: 247)
Name: NF21383_high_21
Description: NF21383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21383_high_21 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 82 - 247
Target Start/End: Complemental strand, 21009242 - 21009076
Alignment:
| Q |
82 |
ctacacgcaaatgcatcctttgtaaaatgaaaaaa-tcatgtgaattagcgtgtgaatgtttatccaacaagatacatttcttgagtaaataacacttat |
180 |
Q |
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| T |
21009242 |
ctacacgcaaatgcatcctttgtaaaataaaaaaaatcatgtgaattagcgtgtgaatgtttatccaacaagatacatttcttgagtaaataacacttat |
21009143 |
T |
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| Q |
181 |
cactcaattttcttgagtgaaaacccacgttaaacctaaagcatttgttaaaaagccaaatagagct |
247 |
Q |
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| T |
21009142 |
cactcaattttcttgagtgaaaacccacgttaaacctaaagcatttgttaaaaagccaaatagagct |
21009076 |
T |
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Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 162 - 235
Target Start/End: Complemental strand, 1849272 - 1849199
Alignment:
| Q |
162 |
ttgagtaaataacacttatcactcaattttcttgagtgaaaacccacgttaaacctaaagcatttgttaaaaag |
235 |
Q |
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| T |
1849272 |
ttgagtaaacaacactaatcactcaattttcttgagtgaaaacccacgttaaacctaaagcatttgttaaaaag |
1849199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 82 - 170
Target Start/End: Complemental strand, 1854283 - 1854192
Alignment:
| Q |
82 |
ctacacgcaaatgcatcctttgtaaaatgaaaaaa---tcatgtgaattagcgtgtgaatgtttatccaacaagatacatttcttgagtaaa |
170 |
Q |
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| T |
1854283 |
ctacacgcaaatgcatcctttgtaaaaaaaaaaaaaaatcatgtgaattagcgtgtgaatgtttatccaataagatacatttcttgagtaaa |
1854192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 205
Target Start/End: Complemental strand, 1849334 - 1849287
Alignment:
| Q |
158 |
tttcttgagtaaataacacttatcactcaattttcttgagtgaaaacc |
205 |
Q |
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| T |
1849334 |
tttcttgagtaaacaatacatatcactaaattttcttgagtgaaaacc |
1849287 |
T |
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