View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21383_high_3 (Length: 578)

Name: NF21383_high_3
Description: NF21383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21383_high_3
NF21383_high_3
[»] chr7 (7 HSPs)
chr7 (296-568)||(6567567-6567835)
chr7 (18-273)||(6568799-6569054)
chr7 (18-288)||(6582943-6583213)
chr7 (296-485)||(6582167-6582351)
chr7 (491-568)||(36713655-36713732)
chr7 (81-115)||(3160285-3160319)
chr7 (512-558)||(6650294-6650340)
[»] scaffold0001 (1 HSPs)
scaffold0001 (491-558)||(67455-67522)
[»] chr4 (6 HSPs)
chr4 (129-184)||(33718960-33719015)
chr4 (494-568)||(15994184-15994258)
chr4 (129-181)||(33720982-33721034)
chr4 (129-181)||(33750436-33750488)
chr4 (129-181)||(33735636-33735688)
chr4 (74-112)||(2428696-2428734)
[»] chr3 (2 HSPs)
chr3 (82-181)||(43490103-43490202)
chr3 (17-188)||(45013884-45014055)
[»] scaffold0495 (1 HSPs)
scaffold0495 (491-568)||(8088-8165)
[»] chr6 (3 HSPs)
chr6 (491-568)||(10231365-10231442)
chr6 (137-181)||(13409878-13409922)
chr6 (81-115)||(4038753-4038787)
[»] chr5 (2 HSPs)
chr5 (491-568)||(42898670-42898746)
chr5 (491-548)||(14051109-14051166)
[»] chr2 (1 HSPs)
chr2 (491-556)||(14463087-14463151)
[»] chr1 (1 HSPs)
chr1 (138-181)||(44331869-44331912)
[»] chr8 (2 HSPs)
chr8 (74-181)||(38653171-38653278)
chr8 (492-568)||(33468103-33468179)


Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 296 - 568
Target Start/End: Complemental strand, 6567835 - 6567567
Alignment:
Q  296 ttccccttcaaagtgtacatgtcagtgtcatcgatcggtgctatatttttctattttattttgcgcatgccttctaatatgataattaacgaaccaacaa 395  Q
    |||||||||||||||||||||||||| ||||||    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6567835 ttccccttcaaagtgtacatgtcagtctcatcg----gtgctatatttttctattttattttgcgcatgccttctaataagataattaacgaaccaacaa 6567740  T
Q  396 ataattagcttacttgacttaattataattttttgaaatattccttcttttaaaaaatgactttgactatggagagagggattgagcaacctacaaattt 495  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6567739 ataattagcttacttgacttaattataattttttgaaatattccttcttttaaaaaatgactttgactatggagagagggattgagcaacatacaaattt 6567640  T
Q  496 tttattttctttcgcatactgtgtagtagcttgtctgagttattgtaacatctgaacattttatcttcctttg 568  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  6567639 tttattttctttcgcctactgtgtagtagcttgtctgagttattgtaacatgtgaacattttatcttcctttg 6567567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 6569054 - 6568799
Alignment:
Q  18 aaattaagcttagcttttgtgcctttgaatttgagtgcagctttgtcatatgcaagagctgcatcttcagctgtatcaaatgttcctaaccaaactctag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6569054 aaattaagcttagcttttgtgcctttgaatttgagtgcagctttgtcatatgcaagagctgcatcttcagctgtatcaaatgttcctaaccaaactctag 6568955  T
Q  118 ctgcnnnnnnngggtcacgtatttcagctgcccattttccccatggtctctgtctcactcctctatagtgtggtttctttttggtctctttcattaacat 217  Q
    ||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6568954 ctgctttttttgggtcacgtatttcagctgcccattttccccatggtctctgtctcactcctctatagtgtggtttctttttggtctctttcattaacat 6568855  T
Q  218 cacatgcaaaacaaggaaaaatgataatcacaaattaattcattcttactttcatt 273  Q
    ||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||    
T  6568854 cacatgcaaaacaagaaaaaatgagaatcacaaatcaattcattcttactttcatt 6568799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 288
Target Start/End: Complemental strand, 6583213 - 6582943
Alignment:
Q  18 aaattaagcttagcttttgtgcctttgaatttgagtgcagctttgtcatatgcaagagctgcatcttcagctgtatcaaatgttcctaaccaaactctag 117  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  6583213 aaattaagcttagcttttgtgcctttgaatttgaatgcagctttgtcatatgcaagagctgcatcttcagctgtgtcaaatgttcctaaccaaactctag 6583114  T
Q  118 ctgcnnnnnnngggtcacgtatttcagctgcccattttccccatggtctctgtctcactcctctatagtgtggtttctttttggtctctttcattaacat 217  Q
    ||||       |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6583113 ctgctttttttgggtcacgtatttcagctgcccattttccccatggtctttgtctcactcctctatagtgtggtttctttttggtctctttcattaacat 6583014  T
Q  218 cacatgcaaaacaaggaaaaatgataatcacaaattaattcattcttactttcattgcaagaagatcatat 288  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||| ||||||||||    
T  6583013 cacatgcaaaacaaggaaaaatgagaatcacaaattaattcatttttactttcattacaaaaagatcatat 6582943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 296 - 485
Target Start/End: Complemental strand, 6582351 - 6582167
Alignment:
Q  296 ttccccttcaaagtgtacatgtcagtgtcatcgatcggtgctatatttttctattttattttgcgcatgccttctaatatgataattaacgaaccaacaa 395  Q
    |||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||| || || | |||||||||  |||||| ||    
T  6582351 ttccccttcaaagtgtacatgtcagtgtcatcg----gtgctatatttttctattttattttgcgcatgccctccaaaaagataattaataaaccaaaaa 6582256  T
Q  396 ataattagcttacttgacttaattataattttttgaaatattccttcttttaaaaaatgactttgactatggagagagggattgagcaac 485  Q
    ||||||||||||||||||  | |||||||||||||||||| ||||||||||| |||||||||||||||||  ||| || |||||||||||    
T  6582255 ataattagcttacttgaccaagttataattttttgaaataatccttctttta-aaaatgactttgactatccagaaagtgattgagcaac 6582167  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 491 - 568
Target Start/End: Complemental strand, 36713732 - 36713655
Alignment:
Q  491 aattttttattttctttcgcatactgtgtagtagcttgtctgagttattgtaacatctgaacattttatcttcctttg 568  Q
    |||||||||||||| ||||  |||||||||||| ||||| |  ||||| |||||||||||||||||||  ||||||||    
T  36713732 aattttttattttccttcgactactgtgtagtaccttgtttatgttatcgtaacatctgaacattttaatttcctttg 36713655  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 81 - 115
Target Start/End: Complemental strand, 3160319 - 3160285
Alignment:
Q  81 tcttcagctgtatcaaatgttcctaaccaaactct 115  Q
    ||||||||||||||||| |||||||||||||||||    
T  3160319 tcttcagctgtatcaaaagttcctaaccaaactct 3160285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 512 - 558
Target Start/End: Complemental strand, 6650340 - 6650294
Alignment:
Q  512 tactgtgtagtagcttgtctgagttattgtaacatctgaacatttta 558  Q
    |||||||||| ||||||| || |||||||||||||||||| ||||||    
T  6650340 tactgtgtagcagcttgtttgtgttattgtaacatctgaatatttta 6650294  T

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Target: scaffold0001 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 491 - 558
Target Start/End: Complemental strand, 67522 - 67455
Alignment:
Q  491 aattttttattttctttcgcatactgtgtagtagcttgtctgagttattgtaacatctgaacatttta 558  Q
    ||||||||||||||| | |  |||||||||||||||||||||  ||||||||||||||||||||||||    
T  67522 aattttttattttctctaggctactgtgtagtagcttgtctgtattattgtaacatctgaacatttta 67455  T

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Target: chr4 (Bit Score: 44; Significance: 9e-16; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 129 - 184
Target Start/End: Complemental strand, 33719015 - 33718960
Alignment:
Q  129 gggtcacgtatttcagctgcccattttccccatggtctctgtctcactcctctata 184  Q
    |||||||| || ||||| ||||||||||||||||||||||||||||||||||||||    
T  33719015 gggtcacgaatctcagcagcccattttccccatggtctctgtctcactcctctata 33718960  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 494 - 568
Target Start/End: Original strand, 15994184 - 15994258
Alignment:
Q  494 tttttattttctttcgcatactgtgtagtagcttgtctgagttattgtaacatctgaacattttatcttcctttg 568  Q
    ||||||||||||||||  |||| |||||||||||| ||| ||||||||||||| ||||| |||||| || |||||    
T  15994184 tttttattttctttcggctactctgtagtagcttgactgtgttattgtaacatttgaactttttatttttctttg 15994258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 33721034 - 33720982
Alignment:
Q  129 gggtcacgtatttcagctgcccattttccccatggtctctgtctcactcctct 181  Q
    |||||||| || ||||| ||||||||||||||||||||||| |||||||||||    
T  33721034 gggtcacgaatctcagcagcccattttccccatggtctctgcctcactcctct 33720982  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 33750488 - 33750436
Alignment:
Q  129 gggtcacgtatttcagctgcccattttccccatggtctctgtctcactcctct 181  Q
    |||||||| |||||||| |||||||| ||||||||||| ||||||||||||||    
T  33750488 gggtcacgaatttcagcagcccatttaccccatggtctttgtctcactcctct 33750436  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 33735688 - 33735636
Alignment:
Q  129 gggtcacgtatttcagctgcccattttccccatggtctctgtctcactcctct 181  Q
    |||||||| || ||||| ||||||||||||||||| ||||| |||||||||||    
T  33735688 gggtcacgaatctcagcagcccattttccccatggcctctgcctcactcctct 33735636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 74 - 112
Target Start/End: Original strand, 2428696 - 2428734
Alignment:
Q  74 agctgcatcttcagctgtatcaaatgttcctaaccaaac 112  Q
    |||||| ||||||||||| ||||||||||||||||||||    
T  2428696 agctgcttcttcagctgtctcaaatgttcctaaccaaac 2428734  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 82 - 181
Target Start/End: Original strand, 43490103 - 43490202
Alignment:
Q  82 cttcagctgtatcaaatgttcctaaccaaactctagctgcnnnnnnngggtcacgtatttcagctgcccattttccccatggtctctgtctcactcctct 181  Q
    |||||||||| ||||||||||||||||| ||||| |||||       || || | ||| || ||||||||||||||||||||||||||||| ||||||||    
T  43490103 cttcagctgtttcaaatgttcctaaccatactcttgctgctttgaatggatctcttatctctgctgcccattttccccatggtctctgtcttactcctct 43490202  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 17 - 188
Target Start/End: Original strand, 45013884 - 45014055
Alignment:
Q  17 aaaattaagcttagcttttgtgcctttgaatttgagtgcagctttgtcatatgcaagagctgcatcttcagctgtatcaaatgttcctaaccaaactcta 116  Q
    |||||| |||||||||||  | ||||||||| ||||||||||||  ||||||||||  |||||| | ||||| || ||||||||||||| ||| || ||     
T  45013884 aaaattgagcttagctttgcttcctttgaatctgagtgcagcttcatcatatgcaacggctgcagcctcagccgtttcaaatgttcctagccataccctt 45013983  T
Q  117 gctgcnnnnnnngggtcacgtatttcagctgcccattttccccatggtctctgtctcactcctctatagtgt 188  Q
    || ||       || ||||| || || || ||||| ||||||||||| ||||| ||||| ||||||||||||    
T  45013984 gccgccttcttcggatcacgaatctctgcagcccactttccccatggcctctgcctcacacctctatagtgt 45014055  T

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Target: scaffold0495 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 491 - 568
Target Start/End: Original strand, 8088 - 8165
Alignment:
Q  491 aattttttattttctttcgcatactgtgtagtagcttgtctgagttattgtaacatctgaacattttatcttcctttg 568  Q
    ||||||||||||| ||||   || |||| ||||||||||| | ||||||||||||||||||||||||| |||||||||    
T  8088 aattttttattttgtttcagctattgtgcagtagcttgtcagtgttattgtaacatctgaacattttagcttcctttg 8165  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 491 - 568
Target Start/End: Original strand, 10231365 - 10231442
Alignment:
Q  491 aattttttattttctttcgcatactgtgtagtagcttgtctgagttattgtaacatctgaacattttatcttcctttg 568  Q
    ||||||||||||| ||||   || |||| ||||||||||| | ||||||||||||||||||||||||| |||||||||    
T  10231365 aattttttattttgtttcagctattgtgcagtagcttgtcagtgttattgtaacatctgaacattttagcttcctttg 10231442  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 137 - 181
Target Start/End: Complemental strand, 13409922 - 13409878
Alignment:
Q  137 tatttcagctgcccattttccccatggtctctgtctcactcctct 181  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||    
T  13409922 tatttctgctgcccattttccccatggtctttgtctcactcctct 13409878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 81 - 115
Target Start/End: Complemental strand, 4038787 - 4038753
Alignment:
Q  81 tcttcagctgtatcaaatgttcctaaccaaactct 115  Q
    ||||||||||||||||| |||||||||||||||||    
T  4038787 tcttcagctgtatcaaaagttcctaaccaaactct 4038753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 491 - 568
Target Start/End: Original strand, 42898670 - 42898746
Alignment:
Q  491 aattttttattttctttcgcatactgtgtagtagcttgtctgagttattgtaacatctgaacattttatcttcctttg 568  Q
    |||||||||||||| ||||  ||||||||| ||||||||||  ||||||||||||| ||||||||||| |||||||||    
T  42898670 aattttttattttcgttcggctactgtgtaatagcttgtctttgttattgtaacat-tgaacattttagcttcctttg 42898746  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 491 - 548
Target Start/End: Original strand, 14051109 - 14051166
Alignment:
Q  491 aattttttattttctttcgcatactgtgtagtagcttgtctgagttattgtaacatct 548  Q
    |||||||||||||||||||   | | |||||||||||||||  |||||||||||||||    
T  14051109 aattttttattttctttcgacaattatgtagtagcttgtctatgttattgtaacatct 14051166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 491 - 556
Target Start/End: Original strand, 14463087 - 14463151
Alignment:
Q  491 aattttttattttctttcgcatactgtgtagtagcttgtctgagttattgtaacatctgaacattt 556  Q
    |||||||||||||||||||  |||||||||||||| |||||| ||| |||||||||||| ||||||    
T  14463087 aattttttattttctttcggctactgtgtagtagcatgtctgtgtt-ttgtaacatctggacattt 14463151  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 138 - 181
Target Start/End: Original strand, 44331869 - 44331912
Alignment:
Q  138 atttcagctgcccattttccccatggtctctgtctcactcctct 181  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||    
T  44331869 atttctgctgcccattttccccatggtctctgtcttactcctct 44331912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 74 - 181
Target Start/End: Original strand, 38653171 - 38653278
Alignment:
Q  74 agctgcatcttcagctgtatcaaatgttcctaaccaaactctagctgcnnnnnnngggtcacgtatttcagctgcccattttccccatggtctctgtctc 173  Q
    |||||||||||||||||| |||||||| |||||||| ||||| |  ||       || || | ||| || |||||||||||||||||||| ||||||||     
T  38653171 agctgcatcttcagctgtttcaaatgtacctaaccatactcttgtagctttgaaaggatctcttatctctgctgcccattttccccatggcctctgtctt 38653270  T
Q  174 actcctct 181  Q
    ||||||||    
T  38653271 actcctct 38653278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 492 - 568
Target Start/End: Complemental strand, 33468179 - 33468103
Alignment:
Q  492 attttttattttctttcgcatactgtgtagtagcttgtctgagttattgtaacatctgaacattttatcttcctttg 568  Q
    |||||||||||| ||||   || ||| |||||| |||| || ||||||||||||||||| ||||||| |||||||||    
T  33468179 attttttattttatttcaactattgtatagtagtttgtttgtgttattgtaacatctgaccattttagcttcctttg 33468103  T

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