View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21383_low_1 (Length: 651)

Name: NF21383_low_1
Description: NF21383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21383_low_1
NF21383_low_1
[»] chr2 (10 HSPs)
chr2 (264-634)||(34101925-34102295)
chr2 (49-125)||(34101710-34101786)
chr2 (1-54)||(34101634-34101687)
chr2 (349-443)||(33941901-33941995)
chr2 (349-408)||(9477944-9478003)
chr2 (349-431)||(43984999-43985081)
chr2 (366-443)||(34652020-34652097)
chr2 (349-409)||(1810657-1810716)
chr2 (364-436)||(1939323-1939395)
chr2 (406-446)||(3070511-3070551)
[»] chr4 (7 HSPs)
chr4 (350-443)||(2996566-2996659)
chr4 (357-435)||(6987733-6987811)
chr4 (371-439)||(488114-488182)
chr4 (350-434)||(11264294-11264378)
chr4 (406-446)||(17976804-17976844)
chr4 (361-409)||(30668384-30668432)
chr4 (350-418)||(36722678-36722746)
[»] chr5 (1 HSPs)
chr5 (361-446)||(40205055-40205140)
[»] chr1 (5 HSPs)
chr1 (349-443)||(51695478-51695573)
chr1 (349-446)||(15515533-15515630)
chr1 (350-437)||(5756676-5756763)
chr1 (361-437)||(15437967-15438043)
chr1 (371-443)||(35925704-35925776)
[»] chr6 (5 HSPs)
chr6 (349-443)||(20368164-20368258)
chr6 (366-437)||(7148675-7148746)
chr6 (454-496)||(733100-733142)
chr6 (361-438)||(8035137-8035214)
chr6 (399-443)||(8147050-8147094)
[»] chr8 (2 HSPs)
chr8 (350-446)||(11415147-11415243)
chr8 (364-431)||(20672757-20672824)
[»] chr3 (1 HSPs)
chr3 (397-438)||(38319000-38319041)


Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 264 - 634
Target Start/End: Original strand, 34101925 - 34102295
Alignment:
Q  264 aatggaattgggatagtgagagatcagcataagtgcttatgtataagctattcctatgagataaaataaagtcaaacgnnnnnnngtataagttattagt 363  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||    
T  34101925 aatggaattgggatagtgagagatcagcataagtgcttatgtataagctattcctatgagataaaataaagtcaaacgtttttttgtataagttattagt 34102024  T
Q  364 tgtttttataagctatcctggatagtttacgagaataagttgaaaatagattatgtacatgttataagttgtttttataaactgactctgataagtgctt 463  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  34102025 tgtttttataagctatcctggatagtttacgagaataagttgaaaatagagtatgtacatgttataagctgtttttataaactgactctgataagtgctt 34102124  T
Q  464 atggcagtagataagctcaaattaactaatttcaaacaagccataaacactagtaattacttctttaaatagatttaggttttgattttggtaatttttg 563  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34102125 atggcagtaggtaagctcaaattaactaatttcaaacaagccataaacactagtaattacttctttaaatagatttaggttttgattttggtaatttttg 34102224  T
Q  564 tagaatatgattctgagattatgttataattggaacagatttagtgttgttgattggttatttatgattat 634  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34102225 tagaatatgattctgagattatgttataattggaacagatttagtgttgttgattggttatttatgattat 34102295  T

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Target: chr2; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 49 - 125
Target Start/End: Original strand, 34101710 - 34101786
Alignment:
Q  49 ccaccgccgaaagaaacatatgtggaagaaattgatgatatgttgcagaaatataacgaaggtttacttagcagagg 125  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34101710 ccaccgccgaaagaaacatatgtggaagaaattgatgatatgttgcagaaatataacgaaggtttacttagcagagg 34101786  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 34101687 - 34101634
Alignment:
Q  1 ttttcagcgaatcttccaacaccggagtttgtagtggaaatcaaatctccaccg 54  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  34101687 ttttcagcgaatcttccaacaccggagtttgcagtggaaatcaaatctccaccg 34101634  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 349 - 443
Target Start/End: Original strand, 33941901 - 33941995
Alignment:
Q  349 gtataagttattagttgtttttataagctatcctggatagtttacgagaataagttgaaaatagattatgtacatgttataagttgtttttataa 443  Q
    ||||||||||| | ||||||| |||||||||| |||| |||||| || ||||||||||||  || ||||| || ||| |||||||||||| ||||    
T  33941901 gtataagttataacttgttttcataagctatcttggagagtttatgataataagttgaaagcagcttatgaacttgtcataagttgttttcataa 33941995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 349 - 408
Target Start/End: Original strand, 9477944 - 9478003
Alignment:
Q  349 gtataagttattagttgtttttataagctatcctggatagtttacgagaataagttgaaa 408  Q
    ||||||||||| ||||||||| ||||||||||||||| || ||| || ||||||||||||    
T  9477944 gtataagttataagttgttttcataagctatcctggagaggttatgaaaataagttgaaa 9478003  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 349 - 431
Target Start/End: Complemental strand, 43985081 - 43984999
Alignment:
Q  349 gtataagttattagttgtttttataagctatcctggatagtttacgagaataagttgaaaatagattatgtacatgttataag 431  Q
    |||||| |||| ||||||||| |||||||||| || | || ||| || |||||| ||||||||||| ||| |||| |||||||    
T  43985081 gtataaattataagttgttttcataagctatcttgaagagcttatgaaaataagctgaaaatagataatgaacatattataag 43984999  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 443
Target Start/End: Complemental strand, 34652097 - 34652020
Alignment:
Q  366 tttttataagctatcctggatagtttacgagaataagttgaaaatagattatgtacatgttataagttgtttttataa 443  Q
    |||| |||||||||| |||| || ||| |  ||||||||||||| || ||||| |||||| ||||||||||| |||||    
T  34652097 ttttcataagctatcttggagagcttatggaaataagttgaaaacagcttatggacatgtcataagttgtttctataa 34652020  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 349 - 409
Target Start/End: Original strand, 1810657 - 1810716
Alignment:
Q  349 gtataagttattagttgtttttataagctatcctggatagtttacgagaataagttgaaaa 409  Q
    ||||||||||| |||||||||||||||||||| || | |||||| || |||||| ||||||    
T  1810657 gtataagttat-agttgtttttataagctatcttgaagagtttatgaaaataagctgaaaa 1810716  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 364 - 436
Target Start/End: Complemental strand, 1939395 - 1939323
Alignment:
Q  364 tgtttttataagctatcctggatagtttacgagaataagttgaaaatagattatgtacatgttataagttgtt 436  Q
    |||||| ||||||||| ||||| || ||| |  ||||||||||||| || ||||| |||||| ||||||||||    
T  1939395 tgttttcataagctatactggagagcttatggaaataagttgaaaacagcttatggacatgtcataagttgtt 1939323  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 406 - 446
Target Start/End: Complemental strand, 3070551 - 3070511
Alignment:
Q  406 aaaatagattatgtacatgttataagttgtttttataaact 446  Q
    ||||||| ||||  |||||||||||||||||||||||||||    
T  3070551 aaaatagtttatagacatgttataagttgtttttataaact 3070511  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 350 - 443
Target Start/End: Original strand, 2996566 - 2996659
Alignment:
Q  350 tataagttattagttgtttttataagctatcctggatagtttacgagaataagttgaaaatagattatgtacatgttataagttgtttttataa 443  Q
    |||||||||| ||||||||| |||||||||| |||| ||  || || ||||||||||||| || ||||| |||||| |||||||||||| ||||    
T  2996566 tataagttataagttgttttcataagctatcttggagagcgtatgaaaataagttgaaaaaagcttatggacatgtcataagttgttttcataa 2996659  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 435
Target Start/End: Complemental strand, 6987811 - 6987733
Alignment:
Q  357 tattagttgtttttataagctatcctggatagtttacgagaataagttgaaaatagattatgtacatgttataagttgt 435  Q
    |||||||| ||||| || ||||||||||| || ||| |  |||||||||||||||| ||||| |||||| |||||||||    
T  6987811 tattagttatttttttacgctatcctggagagcttatggaaataagttgaaaatagtttatggacatgtcataagttgt 6987733  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 371 - 439
Target Start/End: Complemental strand, 488182 - 488114
Alignment:
Q  371 ataagctatcctggatagtttacgagaataagttgaaaatagattatgtacatgttataagttgttttt 439  Q
    |||||||||| |||| | ||||||  |||||| |||||| || ||||| |||||| |||||||||||||    
T  488182 ataagctatcttggagaatttacgtaaataagatgaaaacagcttatgcacatgtcataagttgttttt 488114  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 350 - 434
Target Start/End: Original strand, 11264294 - 11264378
Alignment:
Q  350 tataagttattagttgtttttataagctatcctggatagtttacgagaataagttgaaaatagattatgtacatgttataagttg 434  Q
    |||| ||||| ||||||||| |||||| ||||| || || ||| |  ||||||||||||| || ||||| |||||| ||||||||    
T  11264294 tatatgttataagttgttttcataagccatcctagagagcttatggaaataagttgaaaacagtttatggacatgtcataagttg 11264378  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 406 - 446
Target Start/End: Original strand, 17976804 - 17976844
Alignment:
Q  406 aaaatagattatgtacatgttataagttgtttttataaact 446  Q
    ||||||| ||||  |||||||||||||||||||||||||||    
T  17976804 aaaatagtttatagacatgttataagttgtttttataaact 17976844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 361 - 409
Target Start/End: Complemental strand, 30668432 - 30668384
Alignment:
Q  361 agttgtttttataagctatcctggatagtttacgagaataagttgaaaa 409  Q
    |||||||||||||||||||| ||||||||||| || | |||| ||||||    
T  30668432 agttgtttttataagctatcttggatagtttatgaaattaagctgaaaa 30668384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 350 - 418
Target Start/End: Complemental strand, 36722746 - 36722678
Alignment:
Q  350 tataagttattagttgtttttataagctatcctggatagtttacgagaataagttgaaaatagattatg 418  Q
    |||||||||| ||||||||| ||||| ||||||| | || ||| || |||||| | |||||||||||||    
T  36722746 tataagttataagttgttttgataagttatcctgaagagcttatgaaaataagcttaaaatagattatg 36722678  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 361 - 446
Target Start/End: Complemental strand, 40205140 - 40205055
Alignment:
Q  361 agttgtttttataagctatcctggatagtttacgagaataagttgaaaatagattatgtacatgttataagttgtttttataaact 446  Q
    ||||||||| ||||||||||||||| || |||    |||||| |||||| |||||||| |||||||||||| ||||| ||||||||    
T  40205140 agttgttttcataagctatcctggagagcttatagaaataagctgaaaacagattatggacatgttataagctgtttatataaact 40205055  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 349 - 443
Target Start/End: Complemental strand, 51695573 - 51695478
Alignment:
Q  349 gtataagttattagttgtttttataagctatcctggatagtttacgagaataagttgaaaatagattatgtac-atgttataagttgtttttataa 443  Q
    ||||||||||| || |||||| |||||||||| |||| | |||| || |||||| ||||||||| ||||| || |||| ||||||||||| |||||    
T  51695573 gtataagttatcagatgttttcataagctatcttggagaatttatgaaaataagctgaaaatagcttatgaacaatgtgataagttgtttatataa 51695478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 349 - 446
Target Start/End: Original strand, 15515533 - 15515630
Alignment:
Q  349 gtataagttattagttgtttttataagctatcctggatagtttacgagaataagttgaaaatagattatgtacatgttataagttgtttttataaact 446  Q
    ||||||| ||| ||||||||| ||||| |||| ||||||| ||| |  ||||| ||||||||||  |||  |||||| |||||||||||| |||||||    
T  15515533 gtataagctataagttgttttcataagttatcatggatagcttatggaaataaattgaaaatagcgtattgacatgtcataagttgttttcataaact 15515630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 437
Target Start/End: Complemental strand, 5756763 - 5756676
Alignment:
Q  350 tataagttattagttgtttttataagctatcctggatagtttacgagaataagttgaaaatagattatgtacatgttataagttgttt 437  Q
    ||||| |||| |||||||||  ||||||| |||||| || |||| | |||||||||||||||  |||| ||||| ||||||| |||||    
T  5756763 tataaattataagttgttttcgtaagctagcctggagagcttaccaaaataagttgaaaatatcttatatacatattataaggtgttt 5756676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 361 - 437
Target Start/End: Original strand, 15437967 - 15438043
Alignment:
Q  361 agttgtttttataagctatcctggatagtttacgagaataagttgaaaatagattatgtacatgttataagttgttt 437  Q
    ||||||||| ||| |||||||| || ||||||||  |||||| ||||| ||  ||||| |||||| |||||||||||    
T  15437967 agttgttttcataggctatcctcgagagtttacggaaataagctgaaagtaacttatgaacatgtcataagttgttt 15438043  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 371 - 443
Target Start/End: Original strand, 35925704 - 35925776
Alignment:
Q  371 ataagctatcctggatagtttacgagaataagttgaaaatagattatgtacatgttataagttgtttttataa 443  Q
    |||||||||| |||| |||||| |  ||||||||||||| || ||||| |||||| ||||| |||||| ||||    
T  35925704 ataagctatcatggagagtttatggaaataagttgaaaacagcttatgaacatgtcataagctgttttcataa 35925776  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 443
Target Start/End: Complemental strand, 20368258 - 20368164
Alignment:
Q  349 gtataagttattagttgtttttataagctatcctggatagtttacgagaataagttgaaaatagattatgtacatgttataagttgtttttataa 443  Q
    |||| |||||| ||||||||| ||||||| || |||| |  ||| || |||||||||||| ||| ||||| |||||| |||||||||||| ||||    
T  20368258 gtatgagttataagttgttttcataagctttcttggagaacttatgaaaataagttgaaactagcttatgaacatgtcataagttgttttcataa 20368164  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 437
Target Start/End: Original strand, 7148675 - 7148746
Alignment:
Q  366 tttttataagctatcctggatagtttacgagaataagttgaaaatagattatgtacatgttataagttgttt 437  Q
    |||| |||||||| |||||| || ||| || |||||||||||||||| ||||| ||| || |||||||||||    
T  7148675 ttttaataagctaccctggagagcttatgaaaataagttgaaaatagcttatggacaagtcataagttgttt 7148746  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 454 - 496
Target Start/End: Complemental strand, 733142 - 733100
Alignment:
Q  454 ataagtgcttatggcagtagataagctcaaattaactaatttc 496  Q
    |||||||||||||| ||||||||||||||||| ||| ||||||    
T  733142 ataagtgcttatggtagtagataagctcaaataaaccaatttc 733100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 438
Target Start/End: Complemental strand, 8035214 - 8035137
Alignment:
Q  361 agttgtttttataagctatcctggatagtttacgagaataagttgaaaatagattatgtacatgttataagttgtttt 438  Q
    ||||||||| ||||| |||||| || || |||||| ||||||||||||| |  |||||  ||||| ||||||||||||    
T  8035214 agttgttttcataagttatcctagaaagcttacgaaaataagttgaaaacaagttatgaccatgtcataagttgtttt 8035137  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 399 - 443
Target Start/End: Complemental strand, 8147094 - 8147050
Alignment:
Q  399 taagttgaaaatagattatgtacatgttataagttgtttttataa 443  Q
    |||||||||||||| ||||| | ||||||||||||||||| ||||    
T  8147094 taagttgaaaatagcttatgcatatgttataagttgttttcataa 8147050  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 350 - 446
Target Start/End: Original strand, 11415147 - 11415243
Alignment:
Q  350 tataagttattagttgtttttataagctatcctggatagtttacgagaataagttgaaaatagattatgtacatgttataagttgtttttataaact 446  Q
    ||||||||||  | |||||| |||||||||||| || |||||  || |||||| ||| ||||| ||||| |||||||||||| |||||  |||||||    
T  11415147 tataagttatacgctgttttcataagctatcctagagagtttgtgaaaataagctgagaatagcttatggacatgttataagctgtttccataaact 11415243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 431
Target Start/End: Original strand, 20672757 - 20672824
Alignment:
Q  364 tgtttttataagctatcctggatagtttacgagaataagttgaaaatagattatgtacatgttataag 431  Q
    |||||||||||||||||||||| || ||| || |||||| |||||| || ||||| |||||| |||||    
T  20672757 tgtttttataagctatcctggagagcttatgaaaataagctgaaaacagcttatgaacatgtcataag 20672824  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 438
Target Start/End: Original strand, 38319000 - 38319041
Alignment:
Q  397 aataagttgaaaatagattatgtacatgttataagttgtttt 438  Q
    |||||| ||||||||| ||||| |||||||||||||||||||    
T  38319000 aataagctgaaaatagcttatgaacatgttataagttgtttt 38319041  T

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