View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21383_low_10 (Length: 380)
Name: NF21383_low_10
Description: NF21383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21383_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 16 - 361
Target Start/End: Complemental strand, 11369501 - 11369157
Alignment:
| Q |
16 |
atatcgatgtaaaagaaaatcagcggtcaacttactatctccttgattgtctttttctctacaagaagataattgtctcccttcttctgtgtcatgttag |
115 |
Q |
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| T |
11369501 |
atatcgatgtaaaagaaaatcagcggtcaacttactatctccttgattgtctttttctctacaagaagataattgtctcccttcttctgtgtcatgttag |
11369402 |
T |
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| Q |
116 |
aacaaataacatcaatcagcttcttcaaagtttgttggggtgcatcattcttcaaatcaatgtaaacaactcctgcaaagttnnnnnnnnnnnnncattt |
215 |
Q |
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| T |
11369401 |
aacaaataacatcaatcagcttcttcaaagtttgttggggtgcatcattcttcaaatcaatgtaaacaactcctgcaaaattaaaaaaaaaaaa--aatt |
11369304 |
T |
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| Q |
216 |
cttaggcggccnnnnnnntaccctaaaggtaggtttaaagaataacattttt-aagacaaaatgatatcaaacatgattaattaaataatccaaaataac |
314 |
Q |
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| T |
11369303 |
cttaggcggccaaaaaaataccctaaaggtaggtttaaagaataacatttttgaagacaaaatgatatcaaacatgattaattaaataatccaaaataac |
11369204 |
T |
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| Q |
315 |
taagtcaaacttattatatccagtgatataatgcctgcctagtaagt |
361 |
Q |
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| T |
11369203 |
taagtcaaacttattatatccagtgatataatgcctgcctagtaagt |
11369157 |
T |
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