View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21383_low_11 (Length: 361)

Name: NF21383_low_11
Description: NF21383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21383_low_11
NF21383_low_11
[»] chr8 (3 HSPs)
chr8 (12-242)||(11325970-11326201)
chr8 (295-338)||(11325937-11325980)
chr8 (323-354)||(11325907-11325938)
[»] chr1 (3 HSPs)
chr1 (179-327)||(19175353-19175501)
chr1 (182-314)||(42953804-42953936)
chr1 (239-305)||(47994961-47995027)
[»] chr5 (1 HSPs)
chr5 (185-313)||(17108229-17108357)
[»] chr6 (2 HSPs)
chr6 (183-315)||(25076823-25076955)
chr6 (182-315)||(28951551-28951684)
[»] chr7 (1 HSPs)
chr7 (182-289)||(26337399-26337505)
[»] chr3 (2 HSPs)
chr3 (226-317)||(38547598-38547689)
chr3 (188-312)||(32773790-32773914)


Alignment Details
Target: chr8 (Bit Score: 181; Significance: 1e-97; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 12 - 242
Target Start/End: Complemental strand, 11326201 - 11325970
Alignment:
Q  12 tgaaccaagtgtatgattaatcaatataataaagagcggtgctattgttttttctacattaccccttaataaattgaaagtaattcacccctattaaagn 111  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||     
T  11326201 tgaaccaagtgtatgattaatcaatataataaagagaggtgctattgttttttctacattaccccttaataaattgaaagtaatttgcccctattaaaga 11326102  T
Q  112 nnnnnnnn-tattcttcatatttattcttacaaatagttatcattttatctcaagaacaataagtttcttcgtgtgtgtttgtcatcacgttttcaactt 210  Q
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  11326101 aaaaaaaaatattcttcatatttattcttacaaatagttatcattttatctcaagaacaataagtttcttcgtgtgtgtttgtcaacacgttttcaactt 11326002  T
Q  211 taattgcgctttcccatgcagttccaccgtga 242  Q
    ||||||||||||||||||||||||||||||||    
T  11326001 taattgcgctttcccatgcagttccaccgtga 11325970  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 295 - 338
Target Start/End: Complemental strand, 11325980 - 11325937
Alignment:
Q  295 ttccaccgtgatggcaaacagactattcatctccatcattgaat 338  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  11325980 ttccaccgtgatggcaaacagacaattcatctccatcattgaat 11325937  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 323 - 354
Target Start/End: Complemental strand, 11325938 - 11325907
Alignment:
Q  323 atctccatcattgaatatatgatattcatctc 354  Q
    ||||||||||||||||||||||||||||||||    
T  11325938 atctccatcattgaatatatgatattcatctc 11325907  T

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Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 179 - 327
Target Start/End: Original strand, 19175353 - 19175501
Alignment:
Q  179 ttcgtgtgtgtttgtcatcacgttttcaactttaattgcgctttcccatgcagttccaccgtgaaaatagtgaagcttcaaattggagagtttggcaaaa 278  Q
    |||||||||||||| |||||||||  ||||||||||||||||| | |||||||||||||||||||||||||||||||  ||||||||||||||| |||||    
T  19175353 ttcgtgtgtgtttgccatcacgttggcaactttaattgcgcttcctcatgcagttccaccgtgaaaatagtgaagctctaaattggagagtttgacaaaa 19175452  T
Q  279 catggttttggtgggtttccaccgtgatggcaaacagactattcatctc 327  Q
    | |||||||||||||| ||||||| ||||||||||||||  ||||||||    
T  19175453 cgtggttttggtgggtatccaccgggatggcaaacagacccttcatctc 19175501  T

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Target: chr1; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 182 - 314
Target Start/End: Original strand, 42953804 - 42953936
Alignment:
Q  182 gtgtgtgtttgtcatcacgttttcaactttaattgcgctttcccatgcagttccaccgtgaaaatagtgaagcttcaaattggagagtttggcaaaacat 281  Q
    ||||||||||| ||||| |||| ||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||| ||||||||||||||||  |    
T  42953804 gtgtgtgtttgccatcatgtttgcaactttaattgcgctttcccatgcagtttcaccatgaaaatagtgaagctccaaatcggagagtttggcaaaatgt 42953903  T
Q  282 ggttttggtgggtttccaccgtgatggcaaaca 314  Q
    ||||||||||||| ||||| |||||||||||||    
T  42953904 ggttttggtgggtatccactgtgatggcaaaca 42953936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 305
Target Start/End: Complemental strand, 47995027 - 47994961
Alignment:
Q  239 gtgaaaatagtgaagcttcaaattggagagtttggcaaaacatggttttggtgggtttccaccgtga 305  Q
    |||||||||| |||||| ||| ||||||||||||| ||||| | | |||||||||| ||||||||||    
T  47995027 gtgaaaatagagaagctccaatttggagagtttggaaaaacgttggtttggtgggtatccaccgtga 47994961  T

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Target: chr5 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 185 - 313
Target Start/End: Complemental strand, 17108357 - 17108229
Alignment:
Q  185 tgtgtttgtcatcacgttttcaactttaattgcgctttcccatgcagttccaccgtgaaaatagtgaagcttcaaattggagagtttggcaaaacatggt 284  Q
    |||||||| |||||| ||| ||||||||||||||||| ||| |||||||||||||| |||||||||||| || |||||||||||||||||||||| ||||    
T  17108357 tgtgtttgccatcacatttgcaactttaattgcgcttccccgtgcagttccaccgtaaaaatagtgaagttttaaattggagagtttggcaaaacgtggt 17108258  T
Q  285 tttggtgggtttccaccgtgatggcaaac 313  Q
    |||||||||| || |||||||||| ||||    
T  17108257 tttggtgggtatcgaccgtgatggtaaac 17108229  T

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Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 183 - 315
Target Start/End: Original strand, 25076823 - 25076955
Alignment:
Q  183 tgtgtgtttgtcatcacgttttcaactttaattgcgctttcccatgcagttccaccgtgaaaatagtgaagcttcaaattggagagtttggcaaaacatg 282  Q
    |||||||||| |||||| ||||| ||||||||||| | | || || |||||||||||| ||||||  |||||| ||||||||||||||| | ||||  ||    
T  25076823 tgtgtgtttgccatcacattttctactttaattgcacgtcccaatacagttccaccgtcaaaataaagaagctccaaattggagagtttagaaaaaggtg 25076922  T
Q  283 gttttggtgggtttccaccgtgatggcaaacag 315  Q
    |||||||||||   |||||||||||||||||||    
T  25076923 gttttggtgggcacccaccgtgatggcaaacag 25076955  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 182 - 315
Target Start/End: Complemental strand, 28951684 - 28951551
Alignment:
Q  182 gtgtgtgtttgtcatcacgttttcaactttaattgcgctttcccatgcagttccaccgtgaaaatagtgaagcttcaaattggagagtttggcaaaacat 281  Q
    ||||||||||| |||||||||||||||||||||||  | | |  ||||||| ||||| | ||||||   |||||  |||||||||||||||  ||||| |    
T  28951684 gtgtgtgtttgccatcacgttttcaactttaattgtccgtccaaatgcagtcccaccctcaaaataaaaaagctctaaattggagagtttgaaaaaacgt 28951585  T
Q  282 ggttttggtgggtttccaccgtgatggcaaacag 315  Q
    ||||||||| ||  ||||||||||||||||||||    
T  28951584 ggttttggtaggcatccaccgtgatggcaaacag 28951551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 182 - 289
Target Start/End: Complemental strand, 26337505 - 26337399
Alignment:
Q  182 gtgtgtgtttgtcatcacgttttcaactttaattgcgctttcccatgcagttccaccgtgaaaatagtgaagcttcaaattggagagtttggcaaaacat 281  Q
    ||||||||||| |||||| ||| ||||||||||||||||| |||||  |||||||||||||||||| |||||||  ||||||||||| ||| |||||  |    
T  26337505 gtgtgtgtttgccatcacatttgcaactttaattgcgctt-cccatagagttccaccgtgaaaataatgaagctctaaattggagagattgacaaaatgt 26337407  T
Q  282 ggttttgg 289  Q
    ||||||||    
T  26337406 ggttttgg 26337399  T

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Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 226 - 317
Target Start/End: Original strand, 38547598 - 38547689
Alignment:
Q  226 atgcagttccaccgtgaaaatagtgaagcttcaaattggagagtttggcaaaacatggttttggtgggtttccaccgtgatggcaaacagac 317  Q
    ||||||||||||||| |||||||||||| |  | ||||||||||||||||||   |||||||||||||| |||||||||||| |||||||||    
T  38547598 atgcagttccaccgtaaaaatagtgaagttctatattggagagtttggcaaagtgtggttttggtgggtatccaccgtgatgtcaaacagac 38547689  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 188 - 312
Target Start/End: Complemental strand, 32773914 - 32773790
Alignment:
Q  188 gtttgtcatcacgttttcaactttaattgcgctttcccatgcagttccaccgtgaaaatagtgaagcttcaaattggagagtttggcaaaacatggtttt 287  Q
    ||||| |||||| ||||| |||||||||| || | || || |||||||||||| |||| |  |||||| ||||||||||||||| | ||||| |||||||    
T  32773914 gtttgccatcacattttctactttaattgtgcgtcccaatacagttccaccgtcaaaagaaagaagctccaaattggagagtttagaaaaacgtggtttt 32773815  T
Q  288 ggtgggtttccaccgtgatggcaaa 312  Q
    ||||||   ||||||||||||||||    
T  32773814 ggtgggcacccaccgtgatggcaaa 32773790  T

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