View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21383_low_14 (Length: 320)
Name: NF21383_low_14
Description: NF21383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21383_low_14 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 66 - 320
Target Start/End: Original strand, 27679331 - 27679586
Alignment:
| Q |
66 |
cttgaacaaaaattagaattatccattgattaacattgttgaattaaaataattccattcaatgtttttatactagatcttaactccaactaccgtggac |
165 |
Q |
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| T |
27679331 |
cttgaacaaaaattagaattatcctttgattaacattgttgaattaaaataattccattcaatgtttttatactagatcttaactccaactaccgtggac |
27679430 |
T |
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| Q |
166 |
cgccttcatatgtggttcatatgaactagtacttgaaaattgtccaaaacaccgattacaactgatgttaccgttcaaaagtagaagctcgtaatcccct |
265 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
27679431 |
cgccttcatatgtggttcatatgaactaccacttgaaaattgtccaaaacaccgattacaactgatgttaccgttcaaaagtagaagctcgtagtcccct |
27679530 |
T |
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| Q |
266 |
ttctcctcacaattgaga-aggcgagtttatcgatgccaattttataataacaaag |
320 |
Q |
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||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
27679531 |
ttctcttcacaattgagacgggcgagtttatcgatgccaattttataataacaaag |
27679586 |
T |
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