View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21383_low_17 (Length: 278)

Name: NF21383_low_17
Description: NF21383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21383_low_17
NF21383_low_17
[»] chr7 (13 HSPs)
chr7 (18-259)||(4711582-4711823)
chr7 (18-244)||(4696700-4696926)
chr7 (20-256)||(4673050-4673286)
chr7 (18-244)||(4864281-4864510)
chr7 (18-256)||(4637204-4637442)
chr7 (20-164)||(4653935-4654079)
chr7 (18-256)||(4845522-4845760)
chr7 (26-247)||(4783353-4783574)
chr7 (26-247)||(4815782-4816003)
chr7 (20-250)||(4667294-4667521)
chr7 (110-166)||(4644144-4644200)
chr7 (20-166)||(4631364-4631513)
chr7 (21-82)||(4644216-4644277)
[»] chr4 (1 HSPs)
chr4 (43-184)||(18925280-18925418)


Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 259
Target Start/End: Original strand, 4711582 - 4711823
Alignment:
Q  18 aaaatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4711582 aaaatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctt 4711681  T
Q  118 tcattaacggaatcgaaattgtgtctatgccttcttttctctattacacggaccttaatgacccaaaataccttttgaaatcacttgactttgacaacac 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4711682 tcattaacggaatcgaaattgtgtctatgccttcttttctctattacacggaccttaatgacccaaaataccttttgaaatcacttgactttgacaacac 4711781  T
Q  218 ggaataccaaattcataacgacaaagctttggaaatggtata 259  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  4711782 ggaataccaaattcataacgacaaagctttggaaatggtata 4711823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 4696700 - 4696926
Alignment:
Q  18 aaaatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctt 117  Q
    |||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||| | ||||||||| || |||||||||||||||||||    
T  4696700 aaaatcaccaaagaatattgcattcaaaccaaaccaaatgagaagttaaacataactttcattcccagcaacataaaccagtcaaatccttattatgctt 4696799  T
Q  118 tcattaacggaatcgaaattgtgtctatgccttcttttctctattacacggaccttaatgacccaaaataccttttgaaatcacttgactttgacaacac 217  Q
    ||||||||||||| ||| ||||||| |||||||||||||||||||||||  |||| | |||||||||||| | ||||| |||||||||||| |||||||     
T  4696800 tcattaacggaatagaagttgtgtcaatgccttcttttctctattacacaaacctcagtgacccaaaatatcatttgatatcacttgacttagacaacag 4696899  T
Q  218 ggaataccaaattcataacgacaaagc 244  Q
    ||| |||||| ||| ||||||||||||    
T  4696900 ggactaccaagttcttaacgacaaagc 4696926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 20 - 256
Target Start/End: Complemental strand, 4673286 - 4673050
Alignment:
Q  20 aatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctttc 119  Q
    |||||||||||||| ||| || |||||||| || ||||||||||||| ||||| ||||||||||| || ||| ||  | ||||||  | | |||||||||    
T  4673286 aatcaccaaagaattttgtatccaaatcaagcccaatgagaagctaaacataaatttcattccaagcatcatgaacaaatcaaatgttaaatatgctttc 4673187  T
Q  120 attaacggaatcgaaattgtgtctatgccttcttttctctattacacggaccttaatgacccaaaataccttttgaaatcacttgactttgacaacacgg 219  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||  |||| | ||||||||| || | |||||||||||||||||| ||||||||||    
T  4673186 attaacggaatcgaaattgtgtcaatgccttcttttctctattacacaaacctcagtgacccaaattatcatttgaaatcacttgacttagacaacacgg 4673087  T
Q  220 aataccaaattcataacgacaaagctttggaaatggt 256  Q
    ||||||||||||||||||| |||||||||||||||||    
T  4673086 aataccaaattcataacgaaaaagctttggaaatggt 4673050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 4864510 - 4864281
Alignment:
Q  18 aaaatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattcca---aacaacataaatcattcaaatccttattatg 114  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    || || |||||||| ||||||||||||||||    
T  4864510 aaaatcaccaaagaatattgcattcaaatcaaatcaaatgagaagctaaacataactttcattccggccaataatataaatcaatcaaatccttattatg 4864411  T
Q  115 ctttcattaacggaatcgaaattgtgtctatgccttcttttctctattacacggaccttaatgacccaaaataccttttgaaatcacttgactttgacaa 214  Q
    | |||||||| ||||| ||| | |||||||||||||||||||| ||||||||  |||| ||||||||||||||   ||||||||||||||||||||||||    
T  4864410 ccttcattaatggaatagaagtcgtgtctatgccttcttttctatattacacaaacctcaatgacccaaaatattatttgaaatcacttgactttgacaa 4864311  T
Q  215 cacggaataccaaattcataacgacaaagc 244  Q
    |||| | |||||| ||| ||||||||||||    
T  4864310 cacgaactaccaagttcttaacgacaaagc 4864281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 4637442 - 4637204
Alignment:
Q  18 aaaatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctt 117  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||| ||| ||||||||||||||| |||| |||||| || |||||||||| ||||||||    
T  4637442 aaaatcaccaaagaatattgcatacaaatcaaaccaaatgaaaagttaaacataactttcattcctaacagcataaaccaatcaaatccttgttatgctt 4637343  T
Q  118 tcattaacggaatcgaaattgtgtctatgccttcttttctctattacacggaccttaatgacccaaaataccttttgaaatcacttgactttgacaacac 217  Q
    | |||||||| |||||| ||||||| |||||||||||||||||||||||  |||| ||||||||||| |||  ||||||| || ||||||  ||  ||||    
T  4637342 ttattaacgggatcgaagttgtgtcaatgccttcttttctctattacacaaacctcaatgacccaaattactatttgaaaccagttgactcagagtacac 4637243  T
Q  218 ggaataccaaattcataacgacaaagctttggaaatggt 256  Q
    |||||||| ||||||||| |||||||||||||| |||||    
T  4637242 ggaataccgaattcataaagacaaagctttggagatggt 4637204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 20 - 164
Target Start/End: Complemental strand, 4654079 - 4653935
Alignment:
Q  20 aatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctttc 119  Q
    ||||||||||||||||||||| ||| || |||| ||| ||||||||| ||||||||||||||| ||||||| ||| ||||||||||||||||||||||||    
T  4654079 aatcaccaaagaatattgcatccaagtccaaccgaataagaagctaaacataactttcattcccaacaacacaaaccattcaaatccttattatgctttc 4653980  T
Q  120 attaacggaatcgaaattgtgtctatgccttcttttctctattac 164  Q
    ||||| ||||| ||| |||||||||||||||||||||||||||||    
T  4653979 attaatggaattgaagttgtgtctatgccttcttttctctattac 4653935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 4845522 - 4845760
Alignment:
Q  18 aaaatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctt 117  Q
    ||||| |||||||||||||||||||| ||||||||||||| |||||||| |||||||||| |||| |||||||||||  | |  ||||||| ||||||||    
T  4845522 aaaattaccaaagaatattgcattcagatcaaaccaaatgggaagctaaacataactttctttccgaacaacataaacgaattgaatcctttttatgctt 4845621  T
Q  118 tcattaacggaatcgaaattgtgtctatgccttcttttctctattacacggaccttaatgacccaaaataccttttgaaatcacttgactttgacaacac 217  Q
    || |||||||||||||| ||||||| |||||||||||||||||||||||  |||   |||||  ||| ||   ||| |||| | ||| |||||||||||     
T  4845622 tcgttaacggaatcgaagttgtgtcgatgccttcttttctctattacacaaacccagatgacttaaattattatttcaaattaattggctttgacaacag 4845721  T
Q  218 ggaataccaaattcataacgacaaagctttggaaatggt 256  Q
     |||||| |||||| ||| || ||||||||||| |||||    
T  4845722 agaatacgaaattcgtaatgataaagctttggagatggt 4845760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 26 - 247
Target Start/End: Original strand, 4783353 - 4783574
Alignment:
Q  26 caaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctttcattaac 125  Q
    ||||||||||| ||| |||||||||||||| |||||||||| ||||||||||||||| ||||||| ||| || |  | ||||  ||||||||||||||||    
T  4783353 caaagaatattccatccaaatcaaaccaaacgagaagctaaacataactttcattcccaacaacacaaaccaattgattcctagttatgctttcattaac 4783452  T
Q  126 ggaatcgaaattgtgtctatgccttcttttctctattacacggaccttaatgacccaaaataccttttgaaatcacttgactttgacaacacggaatacc 225  Q
    ||||||||| |||||||||||||||||||||||||||||||  |||| | ||||| | | || ||| | || | || ||  |||||||||||||| || |    
T  4783453 ggaatcgaagttgtgtctatgccttcttttctctattacacaaacctcagtgaccaagattatcttatcaatttacctggttttgacaacacggattatc 4783552  T
Q  226 aaattcataacgacaaagcttt 247  Q
    || ||| |||| ||||||||||    
T  4783553 aagttcttaactacaaagcttt 4783574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 26 - 247
Target Start/End: Original strand, 4815782 - 4816003
Alignment:
Q  26 caaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctttcattaac 125  Q
    ||||||||||| ||| |||||||||||||| |||||||||| ||||||||||||||| ||||||| ||| || |  | ||||  ||||||||||||||||    
T  4815782 caaagaatattccatccaaatcaaaccaaacgagaagctaaacataactttcattcccaacaacacaaaccaattgagtcctagttatgctttcattaac 4815881  T
Q  126 ggaatcgaaattgtgtctatgccttcttttctctattacacggaccttaatgacccaaaataccttttgaaatcacttgactttgacaacacggaatacc 225  Q
    ||||||||| |||||||||||||||||||||||||||||||  |||| | ||||| | | || | | | || | || ||  | |||||||||||||||||    
T  4815882 ggaatcgaagttgtgtctatgccttcttttctctattacacaaacctcagtgaccaagattatcgtatcaagttacctggttctgacaacacggaatacc 4815981  T
Q  226 aaattcataacgacaaagcttt 247  Q
    || ||| |||| ||||||||||    
T  4815982 aagttcttaacaacaaagcttt 4816003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 250
Target Start/End: Complemental strand, 4667521 - 4667294
Alignment:
Q  20 aatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctttc 119  Q
    ||||||||||||||||||||| || | ||||| |   ||||| |||  | ||||||||||||| || |||| ||| || | |||| ||| |   ||||||    
T  4667521 aatcaccaaagaatattgcatccataccaaacaaggggagaaactagacgtaactttcattcccaaaaacacaaaccaattaaatgctttt---gctttc 4667425  T
Q  120 attaacggaatcgaaattgtgtctatgccttcttttctctattacacggaccttaatgacccaaaataccttttgaaatcacttgactttgacaacacgg 219  Q
    || |||||||| || |||||||||||||| |||||||||||||||||  |||| | ||||||||| || | ||||| || |||||||||||||| ||  |    
T  4667424 atcaacggaattgagattgtgtctatgccgtcttttctctattacacaaacctcagtgacccaaattatcatttgacattacttgactttgacagcaatg 4667325  T
Q  220 aataccaaattcataacgacaaagctttgga 250  Q
    ||||||| |||| |||| |||||||| ||||    
T  4667324 aataccatattcctaacaacaaagctatgga 4667294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 110 - 166
Target Start/End: Complemental strand, 4644200 - 4644144
Alignment:
Q  110 ttatgctttcattaacggaatcgaaattgtgtctatgccttcttttctctattacac 166  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  4644200 ttatgctttcattaacggaatcgaagttgtgtctatgccttcttttctctattacac 4644144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 166
Target Start/End: Complemental strand, 4631513 - 4631364
Alignment:
Q  20 aatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattccaaacaa------cataaatcattcaaatccttattat 113  Q
    ||||||||||||||||||||| |||||    |||||||||||||||| ||||||||||||||| || ||      || ||| || | ||||  ||  ||     
T  4631513 aatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcccaaaaatacaaacacaaaccaattaaatggtt--ta- 4631417  T
Q  114 gctttcattaacggaatcgaaattgtgtctatgccttcttttctctattacac 166  Q
    |||||||| |||||||| || ||||||||||||||||||||||||||||||||    
T  4631416 gctttcatcaacggaattgagattgtgtctatgccttcttttctctattacac 4631364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 4644277 - 4644216
Alignment:
Q  21 atcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattcc 82  Q
    |||| |||||| |||||||| ||||| ||| ||||||||||||||| |||||||||||||||    
T  4644277 atcatcaaagagtattgcatccaaattaaaacaaatgagaagctaaacataactttcattcc 4644216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 43 - 184
Target Start/End: Original strand, 18925280 - 18925418
Alignment:
Q  43 aaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctttcattaacggaatcgaaattgtgtc 142  Q
    |||| ||||||| ||||||| |||  ||||||||||||||||||| |||||||||  ||||  |   |||||||||||| |||||||| || || |||||    
T  18925280 aaatgaaaccaactgagaagttaaatataactttcattccaaacaccataaatcaaccaaaggc---ttatgctttcatcaacggaattgagatcgtgtc 18925376  T
Q  143 tatgccttcttttctctattacacggaccttaatgacccaaa 184  Q
     |||||||||||||||||||||||  |||| |||||| ||||    
T  18925377 catgccttcttttctctattacacaaacctcaatgactcaaa 18925418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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