View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21383_low_18 (Length: 265)
Name: NF21383_low_18
Description: NF21383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21383_low_18 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 25 - 265
Target Start/End: Original strand, 27815377 - 27815617
Alignment:
| Q |
25 |
ctaaacctgaatggtaagattctgaagtttggggcaatgttggagcaattttagcaaccacatcaatttggaaggttgcactatgaatgaacccagtgta |
124 |
Q |
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| T |
27815377 |
ctaaacctgaatggtaagattctgaagtttggggcaatgttggagcaattttagcaaccacatcaatttggaaggttgcactatgaatgaacccagtgta |
27815476 |
T |
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| Q |
125 |
agtataagttcgacgttgatgagatggtgaaacatcggaaaatcggcataagagtctatccaaaactgcacgagtttacataagacaacattagaaatag |
224 |
Q |
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| T |
27815477 |
agtataagttcgacgttgatgagatggtgaaacatcggaaaatcggcataagagtctatccaaaactgcacgagtttacataagacaacattagaaatag |
27815576 |
T |
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| Q |
225 |
tgtatatacatatttaggaacatgatgattaattattttct |
265 |
Q |
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| T |
27815577 |
tgtatatacatatttaggaacatgatgattaattatattct |
27815617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 90
Target Start/End: Original strand, 2850832 - 2850895
Alignment:
| Q |
27 |
aaacctgaatggtaagattctgaagtttggggcaatgttggagcaattttagcaaccacatcaa |
90 |
Q |
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| T |
2850832 |
aaacttgaatgataaaattttgaagtttcgggcaatgttcgagcaattctaacaaccacatcaa |
2850895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 19935413 - 19935360
Alignment:
| Q |
32 |
tgaatggtaagattctgaagtttggggcaatgttggagcaattttagcaaccac |
85 |
Q |
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| T |
19935413 |
tgaatggtaagattttgaagtttgggacaatgtttcagcgcttttagcaaccac |
19935360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 19966552 - 19966499
Alignment:
| Q |
32 |
tgaatggtaagattctgaagtttggggcaatgttggagcaattttagcaaccac |
85 |
Q |
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| T |
19966552 |
tgaatggtaagattttgaagtttgggacaatgtttcagcgcttttagcaaccac |
19966499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 11378227 - 11378183
Alignment:
| Q |
32 |
tgaatggtaagattctgaagtttggggcaatgttggagcaatttt |
76 |
Q |
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| T |
11378227 |
tgaatggtaagattctgaagcttaggacaatgttggagcactttt |
11378183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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