View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21383_low_19 (Length: 263)
Name: NF21383_low_19
Description: NF21383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21383_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 128 - 247
Target Start/End: Complemental strand, 21008880 - 21008761
Alignment:
| Q |
128 |
attacatctgctattaaaaatataaatccatgtccttaatttaacccatttcatcatgaatataattcaagtacatggtttagcatttgtgacatatcta |
227 |
Q |
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| T |
21008880 |
attacatctgctattaaaaaaattaatccatgtccttaatttaacccatttcatcatgaatataattcaagtacatggtttagcatttgtgacatatcta |
21008781 |
T |
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| Q |
228 |
atgttggttttgatctatat |
247 |
Q |
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|||||||||||||||||||| |
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| T |
21008780 |
atgttggttttgatctatat |
21008761 |
T |
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Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 21008995 - 21008936
Alignment:
| Q |
11 |
atattccaaatccaatgattatccttttgattgtacgaaaatcaaacgtttattggcaca |
70 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
21008995 |
atattccaaatccaatgattatccttttgattgtacgaaaatcaaacgttttttggcaca |
21008936 |
T |
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