View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21383_low_26 (Length: 219)

Name: NF21383_low_26
Description: NF21383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21383_low_26
NF21383_low_26
[»] chr6 (4 HSPs)
chr6 (119-202)||(19713542-19713625)
chr6 (119-200)||(22526172-22526254)
chr6 (124-194)||(28588631-28588701)
chr6 (119-194)||(22570398-22570474)
[»] chr8 (6 HSPs)
chr8 (122-202)||(28857137-28857217)
chr8 (119-200)||(17963938-17964019)
chr8 (119-202)||(13833050-13833133)
chr8 (119-201)||(17099673-17099756)
chr8 (119-200)||(20988880-20988962)
chr8 (124-190)||(18571055-18571122)
[»] chr7 (5 HSPs)
chr7 (119-202)||(2506292-2506375)
chr7 (140-201)||(19202007-19202068)
chr7 (119-201)||(4986224-4986307)
chr7 (119-201)||(4990322-4990405)
chr7 (119-202)||(6038769-6038852)
[»] chr5 (5 HSPs)
chr5 (119-194)||(25571953-25572028)
chr5 (119-194)||(26117868-26117943)
chr5 (119-194)||(34489408-34489484)
chr5 (119-172)||(24262621-24262675)
chr5 (119-202)||(23598206-23598289)
[»] chr3 (4 HSPs)
chr3 (119-200)||(28313691-28313772)
chr3 (119-195)||(4839457-4839533)
chr3 (120-172)||(13905381-13905433)
chr3 (136-195)||(20289922-20289982)
[»] chr4 (2 HSPs)
chr4 (119-191)||(9054556-9054628)
chr4 (119-165)||(22216623-22216669)
[»] chr1 (1 HSPs)
chr1 (119-173)||(16115369-16115423)
[»] chr2 (3 HSPs)
chr2 (122-202)||(24526933-24527013)
chr2 (119-202)||(24522184-24522267)
chr2 (119-201)||(23009510-23009593)
[»] scaffold0056 (1 HSPs)
scaffold0056 (140-201)||(23587-23648)


Alignment Details
Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 119 - 202
Target Start/End: Original strand, 19713542 - 19713625
Alignment:
Q  119 aagataaatagttctacttagtacccatcttgtttgatttaaggaaggaaggttgacaatacatcaatgtttagtagaaatcct 202  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||| ||||||    
T  19713542 aagataaatagttctacttagtacccatcttgtttgaatcaaggaaggaaggttggcaatacatcaatgtttagtaggaatcct 19713625  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 119 - 200
Target Start/End: Original strand, 22526172 - 22526254
Alignment:
Q  119 aagataaatagttctactt-agtacccatcttgtttgatttaaggaaggaaggttgacaatacatcaatgtttagtagaaatc 200  Q
    ||||||||||||||||||| ||||||||||||||  |||| |||||| |||||||| || | ||| |||||||||||| ||||    
T  22526172 aagataaatagttctactttagtacccatcttgtcggattcaaggaacgaaggttggcagttcataaatgtttagtaggaatc 22526254  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 124 - 194
Target Start/End: Original strand, 28588631 - 28588701
Alignment:
Q  124 aaatagttctacttagtacccatcttgtttgatttaaggaaggaaggttgacaatacatcaatgtttagta 194  Q
    ||||| |||||||| ||||||| |||| |||||| ||||||||||||||| || || ||||||||||||||    
T  28588631 aaatatttctacttggtacccaacttgattgattcaaggaaggaaggttggcagtatatcaatgtttagta 28588701  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 119 - 194
Target Start/End: Complemental strand, 22570474 - 22570398
Alignment:
Q  119 aagataaatagttctact-tagtacccatcttgtttgatttaaggaaggaaggttgacaatacatcaatgtttagta 194  Q
    |||||||||||||||||| |  |||||||||||| ||||| ||||||||||||||||||   ||| |||||||||||    
T  22570474 aagataaatagttctactattttacccatcttgtctgattcaaggaaggaaggttgacatatcataaatgtttagta 22570398  T

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Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 122 - 202
Target Start/End: Complemental strand, 28857217 - 28857137
Alignment:
Q  122 ataaatagttctacttagtacccatcttgtttgatttaaggaaggaaggttgacaatacatcaatgtttagtagaaatcct 202  Q
    |||||||||||| ||||||||||||||| ||||||| | ||||||||||||| ||||||||||||||||||||| ||||||    
T  28857217 ataaatagttctgcttagtacccatcttctttgattcatggaaggaaggttggcaatacatcaatgtttagtaggaatcct 28857137  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 119 - 200
Target Start/End: Complemental strand, 17964019 - 17963938
Alignment:
Q  119 aagataaatagttctacttagtacccatcttgtttgatttaaggaaggaaggttgacaatacatcaatgtttagtagaaatc 200  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||||| |||  || || ||||||||||||||| ||||    
T  17964019 aagataaatagttctacttagtacccatcttctttgattcaaggaaggaatgttatcactagatcaatgtttagtaggaatc 17963938  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 119 - 202
Target Start/End: Original strand, 13833050 - 13833133
Alignment:
Q  119 aagataaatagttctacttagtacccatcttgtttgatttaaggaaggaaggttgacaatacatcaatgtttagtagaaatcct 202  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||| | ||||   || || |||||||||||||| ||||||    
T  13833050 aagataaatagttctacttagtatccatcttgtttgattcaaggaagaagggtttgtaacacttcaatgtttagtaggaatcct 13833133  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 201
Target Start/End: Original strand, 17099673 - 17099756
Alignment:
Q  119 aagataaatagttctact-tagtacccatcttgtttgatttaaggaaggaaggttgacaatacatcaatgtttagtagaaatcc 201  Q
    |||| ||||||||||||| |  |||||||||||||||  | |||||| ||||| ||||||||||| ||||||||| ||||||||    
T  17099673 aagacaaatagttctactgttttacccatcttgtttggatcaaggaatgaaggatgacaatacattaatgtttagaagaaatcc 17099756  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 119 - 200
Target Start/End: Original strand, 20988880 - 20988962
Alignment:
Q  119 aagataaatagttctacttagtacccatctt-gtttgatttaaggaaggaaggttgacaatacatcaatgtttagtagaaatc 200  Q
    |||||||| ||||||||||||||||||||||  |||| ||||||||||||| | ||| || |  |||||||||||||| ||||    
T  20988880 aagataaaaagttctacttagtacccatcttattttggtttaaggaaggaaagatgataaaatttcaatgtttagtaggaatc 20988962  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 190
Target Start/End: Complemental strand, 18571122 - 18571055
Alignment:
Q  124 aaatagttctact-tagtacccatcttgtttgatttaaggaaggaaggttgacaatacatcaatgttt 190  Q
    ||||||||||||| |  |||||||||||||||||| |||||||||||| || || | |||||||||||    
T  18571122 aaatagttctactgttttacccatcttgtttgattcaaggaaggaaggatggcagtgcatcaatgttt 18571055  T

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Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 119 - 202
Target Start/End: Original strand, 2506292 - 2506375
Alignment:
Q  119 aagataaatagttctacttagtacccatcttgtttgatttaaggaaggaaggttgacaatacatcaatgtttagtagaaatcct 202  Q
    |||||||||||||||||||| ||||||||||||||||||  | |||||||||| | ||| || |||||||||||||| ||||||    
T  2506292 aagataaatagttctacttactacccatcttgtttgattctatgaaggaaggtgggcaacacttcaatgtttagtaggaatcct 2506375  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 140 - 201
Target Start/End: Complemental strand, 19202068 - 19202007
Alignment:
Q  140 tacccatcttgtttgatttaaggaaggaaggttgacaatacatcaatgtttagtagaaatcc 201  Q
    |||||||||||||||| | |||||||||||| ||||||||||| |||||||||||| |||||    
T  19202068 tacccatcttgtttgaatcaaggaaggaaggatgacaatacattaatgtttagtaggaatcc 19202007  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 119 - 201
Target Start/End: Original strand, 4986224 - 4986307
Alignment:
Q  119 aagataaatagttctact-tagtacccatcttgtttgatttaaggaaggaaggttgacaatacatcaatgtttagtagaaatcc 201  Q
    |||||||||||||||| | |  |||||||||||| ||||||||||||||||||||| ||   |||||| |||||||||||||||    
T  4986224 aagataaatagttctattgttttacccatcttgtctgatttaaggaaggaaggttggcagatcatcaacgtttagtagaaatcc 4986307  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 119 - 201
Target Start/End: Original strand, 4990322 - 4990405
Alignment:
Q  119 aagataaatagttctact-tagtacccatcttgtttgatttaaggaaggaaggttgacaatacatcaatgtttagtagaaatcc 201  Q
    |||||||||||||||| | |  |||||||||||| ||||||||||||||||||||| ||   |||||| |||||||||||||||    
T  4990322 aagataaatagttctattgttttacccatcttgtctgatttaaggaaggaaggttggcagatcatcaacgtttagtagaaatcc 4990405  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 119 - 202
Target Start/End: Original strand, 6038769 - 6038852
Alignment:
Q  119 aagataaatagttctactt-agtacccatcttgtttgatttaaggaaggaaggttgacaatacatcaatgtttagtagaaatcct 202  Q
    ||||||||||||||||||| |||||||||||||| ||||||| |||| |||||||  || | ||||||| |||||||| ||||||    
T  6038769 aagataaatagttctactttagtacccatcttgtctgatttacggaatgaaggttagcagttcatcaat-tttagtaggaatcct 6038852  T

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Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 119 - 194
Target Start/End: Original strand, 25571953 - 25572028
Alignment:
Q  119 aagataaatagttctacttagtacccatcttgtttgatttaaggaaggaaggttgacaatacatcaatgtttagta 194  Q
    ||||||||||||||||||||||||  ||||||||||| | ||||||||||||||| ||| |||||||| |||||||    
T  25571953 aagataaatagttctacttagtacggatcttgtttgaatcaaggaaggaaggttggcaacacatcaatctttagta 25572028  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 119 - 194
Target Start/End: Complemental strand, 26117943 - 26117868
Alignment:
Q  119 aagataaatagttctacttagtacccatcttgtttgatttaaggaaggaaggttgacaatacatcaatgtttagta 194  Q
    ||||||||||||||||| |||||||||||   ||||| | ||||||||||||||||||||||||||||| ||||||    
T  26117943 aagataaatagttctacgtagtacccatcgattttgaatcaaggaaggaaggttgacaatacatcaatgattagta 26117868  T

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Target: chr5; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 119 - 194
Target Start/End: Complemental strand, 34489484 - 34489408
Alignment:
Q  119 aagataaatagttctact-tagtacccatcttgtttgatttaaggaaggaaggttgacaatacatcaatgtttagta 194  Q
    |||||||||||||||||| |||| ||| |||||| | ||| |||||||||||||||||||| |||||||||||||||    
T  34489484 aagataaatagttctactgtagtgcccttcttgtctaattcaaggaaggaaggttgacaattcatcaatgtttagta 34489408  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 119 - 172
Target Start/End: Complemental strand, 24262675 - 24262621
Alignment:
Q  119 aagataaatagttctactt-agtacccatcttgtttgatttaaggaaggaaggtt 172  Q
    ||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||    
T  24262675 aagataaatagttctactttagtacccatcttgtctgattcaaggaaggaaggtt 24262621  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 202
Target Start/End: Complemental strand, 23598289 - 23598206
Alignment:
Q  119 aagataaatagttctacttagtacccatcttgtttgatttaaggaaggaaggttgacaatacatcaatgtttagtagaaatcct 202  Q
    |||| |||||||| ||||||||||||||||||||||||| ||  |||||| ||||  ||||| | |||||| ||||| ||||||    
T  23598289 aagaaaaatagttatacttagtacccatcttgtttgattcaacaaaggaatgttggtaatacttaaatgttaagtaggaatcct 23598206  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 119 - 200
Target Start/End: Original strand, 28313691 - 28313772
Alignment:
Q  119 aagataaatagttctacttagtacccatcttgtttgatttaaggaaggaaggttgacaatacatcaatgtttagtagaaatc 200  Q
    ||||||||||||| || |||||||  ||||||||| ||| ||||||||||  |||||| | |||||||||||||||||||||    
T  28313691 aagataaatagttatatttagtacaaatcttgtttaattcaaggaaggaatattgacagtgcatcaatgtttagtagaaatc 28313772  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 119 - 195
Target Start/End: Complemental strand, 4839533 - 4839457
Alignment:
Q  119 aagataaatagttctacttagtacccatcttgtttgatttaaggaaggaaggttgacaatacatcaatgtttagtag 195  Q
    |||||||||||||||| ||| ||||||||||||||| ||||||||||||| |||   | ||| ||||||||||||||    
T  4839533 aagataaatagttctatttaatacccatcttgtttggtttaaggaaggaatgttagtagtacttcaatgtttagtag 4839457  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 13905381 - 13905433
Alignment:
Q  120 agataaatagttctacttagtacccatcttgtttgatttaaggaaggaaggtt 172  Q
    ||||||| |||| || |||||||||||||||||||||| |||| |||||||||    
T  13905381 agataaacagttgtaattagtacccatcttgtttgattcaaggcaggaaggtt 13905433  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 195
Target Start/End: Original strand, 20289922 - 20289982
Alignment:
Q  136 ttagtacccatcttgttt-gatttaaggaaggaaggttgacaatacatcaatgtttagtag 195  Q
    |||||||||||||||||| | |||||| || ||||||||  ||||| ||||||||||||||    
T  20289922 ttagtacccatcttgttttggtttaagaaatgaaggttggtaatacttcaatgtttagtag 20289982  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 119 - 191
Target Start/End: Complemental strand, 9054628 - 9054556
Alignment:
Q  119 aagataaatagttctacttagtacccatcttgtttgatttaaggaaggaaggttgacaatacatcaatgttta 191  Q
    |||||||||||||||||||| |||||| ||||||||||| |||||||||| |||| || | ||||| ||||||    
T  9054628 aagataaatagttctacttattacccagcttgtttgattcaaggaaggaatgttggcagtgcatcattgttta 9054556  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 119 - 165
Target Start/End: Original strand, 22216623 - 22216669
Alignment:
Q  119 aagataaatagttctacttagtacccatcttgtttgatttaaggaag 165  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||||    
T  22216623 aagataaatagttcttcttagtacccatcttgtttggtttaaggaag 22216669  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 119 - 173
Target Start/End: Complemental strand, 16115423 - 16115369
Alignment:
Q  119 aagataaatagttctacttagtacccatcttgtttgatttaaggaaggaaggttg 173  Q
    ||||||||||||| ||||||||||||||||||||| |||  ||||||||||||||    
T  16115423 aagataaatagttatacttagtacccatcttgtttaattcgaggaaggaaggttg 16115369  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 122 - 202
Target Start/End: Complemental strand, 24527013 - 24526933
Alignment:
Q  122 ataaatagttctacttagtacccatcttgtttgatttaaggaaggaaggttgacaatacatcaatgtttagtagaaatcct 202  Q
    |||| ||||||||||||||| |||||||||||||   |||||||||||||||  | |||||| ||| ||||||| ||||||    
T  24527013 ataattagttctacttagtatccatcttgtttgagccaaggaaggaaggttggaagtacatcgatgattagtaggaatcct 24526933  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 202
Target Start/End: Complemental strand, 24522267 - 24522184
Alignment:
Q  119 aagataaatagttctacttagtacccatcttgtttgatttaaggaaggaaggttgacaatacatcaatgtttagtagaaatcct 202  Q
    ||||||| ||||||||||||||| |||||||||||||   |||||||||||||||  | |||||| ||| ||||| | ||||||    
T  24522267 aagataattagttctacttagtatccatcttgtttgagccaaggaaggaaggttggaagtacatcgatgattagtgggaatcct 24522184  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 201
Target Start/End: Original strand, 23009510 - 23009593
Alignment:
Q  119 aagataaatagttctactt-agtacccatcttgtttgatttaaggaaggaaggttgacaatacatcaatgtttagtagaaatcc 201  Q
    |||||||||||||||| || ||||||||  |||||||||| ||||||||| ||||| ||   ||||||||||||| || |||||    
T  23009510 aagataaatagttctattttagtacccagtttgtttgattcaaggaaggatggttggcatatcatcaatgtttagaaggaatcc 23009593  T

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Target: scaffold0056 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 201
Target Start/End: Complemental strand, 23648 - 23587
Alignment:
Q  140 tacccatcttgtttgatttaaggaaggaaggttgacaatacatcaatgtttagtagaaatcc 201  Q
    |||||||||||||||| | |||||||||||| ||  | ||||| |||||||||||| |||||    
T  23648 tacccatcttgtttgaatcaaggaaggaaggatggaagtacattaatgtttagtaggaatcc 23587  T

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