View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21383_low_4 (Length: 519)

Name: NF21383_low_4
Description: NF21383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21383_low_4
NF21383_low_4
[»] chr3 (4 HSPs)
chr3 (18-221)||(43815017-43815220)
chr3 (334-506)||(43815343-43815515)
chr3 (277-323)||(43815277-43815323)
chr3 (341-436)||(34760793-34760888)
[»] chr8 (21 HSPs)
chr8 (52-221)||(29245622-29245791)
chr8 (51-221)||(29285688-29285858)
chr8 (337-449)||(29253720-29253832)
chr8 (340-451)||(29317290-29317401)
chr8 (339-451)||(29363645-29363757)
chr8 (78-221)||(29357320-29357463)
chr8 (338-440)||(29310822-29310924)
chr8 (42-221)||(29310998-29311177)
chr8 (339-451)||(29285469-29285581)
chr8 (340-451)||(29340255-29340366)
chr8 (339-445)||(29357092-29357198)
chr8 (72-221)||(29363849-29363998)
chr8 (337-432)||(29215276-29215371)
chr8 (340-440)||(29245417-29245517)
chr8 (79-190)||(29340507-29340618)
chr8 (49-155)||(29234207-29234313)
chr8 (49-165)||(29215006-29215122)
chr8 (337-449)||(29223509-29223621)
chr8 (80-164)||(29317572-29317656)
chr8 (78-216)||(29253938-29254076)
chr8 (102-173)||(29223760-29223831)
[»] chr2 (6 HSPs)
chr2 (49-220)||(30919558-30919729)
chr2 (49-164)||(30931045-30931160)
chr2 (339-451)||(30931326-30931438)
chr2 (49-165)||(30910110-30910226)
chr2 (337-433)||(30919834-30919930)
chr2 (337-433)||(30910385-30910481)
[»] chr5 (2 HSPs)
chr5 (49-155)||(14497538-14497644)
chr5 (341-432)||(14497823-14497914)
[»] chr4 (1 HSPs)
chr4 (341-436)||(43729765-43729860)


Alignment Details
Target: chr3 (Bit Score: 180; Significance: 6e-97; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 18 - 221
Target Start/End: Original strand, 43815017 - 43815220
Alignment:
Q  18 acatacttcatggccattgcttgcatcgatgaattttcttccaaatctgtttaaagagccagctcttaatatgtcttgttctgttgttcttctaattgga 117  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43815017 acatacttcatggccattgcttgcatcggtgaattttctttcaaatctgtttaaagagccagctcttaatatgtcttgttctgttgttcttctaattgga 43815116  T
Q  118 attgtaccttcaggacatgattcatcggataagctccacaattgaaagatgtcacttaaattatctatttggttgtgccatcttggtctttccggaggat 217  Q
    |||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  43815117 attgtaccttcaggacatgattcaccggataaactccacagttgaaagatgtcacttaaattatctatttggttgtgccatcttagtctttccggaggat 43815216  T
Q  218 cctg 221  Q
    ||||    
T  43815217 cctg 43815220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 334 - 506
Target Start/End: Original strand, 43815343 - 43815515
Alignment:
Q  334 tataaaataccaatggtttttgccctttcaatagaggatgatcaaaagctggttgtttatgcgttaaaacacaatctatgatatcaccgtcaggactctg 433  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43815343 tataaaataccaatggtttttgccctttcaataaaggatgatcaaaagctggttgtttatgcgttaaaacacaatctatgatatcaccgtcaggactctg 43815442  T
Q  434 caaaaataaacacaaacatataagttagactccaagatttaagagtgtgtttaaatactagagaattgtctct 506  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43815443 caaaaataaacacaaacatataagttagactccaagatttaagagtgtgtttaaatactagagaattgtctct 43815515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 277 - 323
Target Start/End: Original strand, 43815277 - 43815323
Alignment:
Q  277 gtttgctttcaaaaattatttccgaaattttcttattaaattcacac 323  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||    
T  43815277 gtttgctttcaaaaattatttccgaatttttcttattaaattcacac 43815323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 341 - 436
Target Start/End: Original strand, 34760793 - 34760888
Alignment:
Q  341 taccaatggtttttgccctttcaatagaggatgatcaaaagctggttgtttatgcgttaaaacacaatctatgatatcaccgtcaggactctgcaa 436  Q
    |||||||||||| |||||||| |    ||||||||||||||||||||| | ||| | ||||| ||||||||| | |||||| || |||||||||||    
T  34760793 taccaatggtttatgccctttaagcttaggatgatcaaaagctggttgatgatgagataaaatacaatctatcaaatcaccatctggactctgcaa 34760888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 2e-38; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 52 - 221
Target Start/End: Complemental strand, 29245791 - 29245622
Alignment:
Q  52 tttcttccaaatctgtttaaagagccagctcttaatatgtcttgttctgttgttcttctaattggaattgtaccttcaggacatgattcatcggataagc 151  Q
    ||||||||||| || |  | ||| ||||||||| | ||||||| ||||||||||||||||||||||||||| |||||||||||||||||| | || || |    
T  29245791 tttcttccaaaactatcaatagatccagctcttgagatgtcttcttctgttgttcttctaattggaattgttccttcaggacatgattcaccagacaaac 29245692  T
Q  152 tccacaattgaaagatgtcacttaaattatctatttggttgtgccatcttggtctttccggaggatcctg 221  Q
    |||||||||||||||||||||| ||||||  ||||||||| |||| | ||| |||||| |||||||||||    
T  29245691 tccacaattgaaagatgtcactcaaattacttatttggttatgcccttttgatctttctggaggatcctg 29245622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 51 - 221
Target Start/End: Complemental strand, 29285858 - 29285688
Alignment:
Q  51 ttttcttccaaatctgtttaaagagccagctcttaatatgtcttgttctgttgttcttctaattggaattgtaccttcaggacatgattcatcggataag 150  Q
    |||||||||||||||| | | |||| || ||||||||||||||| ||| ||| ||||||||||||||||||| || ||||||||||||||| | |||||     
T  29285858 ttttcttccaaatctgctaatagagtcaactcttaatatgtcttcttcggttattcttctaattggaattgttccatcaggacatgattcaccagataaa 29285759  T
Q  151 ctccacaattgaaagatgtcacttaaattatctatttggttgtgccatcttggtctttccggaggatcctg 221  Q
    |||||| ||||||||| |||||| ||||||| ||||||||| ||||   ||| |||||| ||| |||||||    
T  29285758 ctccacgattgaaagaagtcactcaaattatttatttggttatgcccaattgatctttctggaagatcctg 29285688  T

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Target: chr8; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 337 - 449
Target Start/End: Complemental strand, 29253832 - 29253720
Alignment:
Q  337 aaaataccaatggtttttgccctttcaatagaggatgatcaaaagctggttgtttatgcgttaaaacacaatctatgatatcaccgtcaggactctgcaa 436  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |  | ||||||||||||||||||| | | || |||||||||    
T  29253832 aaaataccaatggtttttgtcctttcaatagaggatgatcaaaagctggttgtttatgagacataacacaatctatgatatcatcatgagaactctgcaa 29253733  T
Q  437 aaataaacacaaa 449  Q
    |||| ||||||||    
T  29253732 aaatgaacacaaa 29253720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 340 - 451
Target Start/End: Complemental strand, 29317401 - 29317290
Alignment:
Q  340 ataccaatggtttttgccctttcaatagaggatgatcaaaagctggttgtttatgcgttaaaacacaatctatgatatcaccgtcaggactctgcaaaaa 439  Q
    |||||||||||||||| ||||||||||  ||||||||||||||| |||||||||| || |||| |||||||||||||||||| ||||||||||| |||||    
T  29317401 ataccaatggtttttgtcctttcaataagggatgatcaaaagctagttgtttatgtgtcaaaatacaatctatgatatcaccatcaggactctgtaaaaa 29317302  T
Q  440 taaacacaaaca 451  Q
    | ||||||||||    
T  29317301 tgaacacaaaca 29317290  T

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Target: chr8; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 339 - 451
Target Start/End: Complemental strand, 29363757 - 29363645
Alignment:
Q  339 aataccaatggtttttgccctttcaatagaggatgatcaaaagctggttgtttatgcgttaaaacacaatctatgatatcaccgtcaggactctgcaaaa 438  Q
    ||||||||||||||||| |||||||||||||||||||||||||||   |||||||| ||||| | |||||||||||||||||| ||||||||||| | ||    
T  29363757 aataccaatggtttttgtcctttcaatagaggatgatcaaaagctaactgtttatgagttaatatacaatctatgatatcaccatcaggactctgtacaa 29363658  T
Q  439 ataaacacaaaca 451  Q
    || ||||||||||    
T  29363657 atgaacacaaaca 29363645  T

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Target: chr8; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 78 - 221
Target Start/End: Complemental strand, 29357463 - 29357320
Alignment:
Q  78 agctcttaatatgtcttgttctgttgttcttctaattggaattgtaccttcaggacatgattcatcggataagctccacaattgaaagatgtcacttaaa 177  Q
    ||||||||| | |||||||||||||  |||||||||||||||||| |||||||| ||||||||| | || ||||||||||||||||| |||||||| | |    
T  29357463 agctcttaacaagtcttgttctgttactcttctaattggaattgttccttcagggcatgattcaccagacaagctccacaattgaaatatgtcactcata 29357364  T
Q  178 ttatctatttggttgtgccatcttggtctttccggaggatcctg 221  Q
    ||||||||||| || | |  |||||||||||  |||||||||||    
T  29357363 ttatctatttgattatccgctcttggtctttttggaggatcctg 29357320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 338 - 440
Target Start/End: Complemental strand, 29310924 - 29310822
Alignment:
Q  338 aaataccaatggtttttgccctttcaatagaggatgatcaaaagctggttgtttatgcgttaaaacacaatctatgatatcaccgtcaggactctgcaaa 437  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| || |||||||| || | |||||| || |||||||||||||||    
T  29310924 aaataccaatggtttttgtcctttcaataaaggatgatcaaaagctggttgtttatgtgtcaaaacacagtcaacgatatcgccatcaggactctgcaaa 29310825  T
Q  438 aat 440  Q
    |||    
T  29310824 aat 29310822  T

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Target: chr8; HSP #8
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 42 - 221
Target Start/End: Complemental strand, 29311177 - 29310998
Alignment:
Q  42 atcgatgaattttcttccaaatctgtttaaagagccagctcttaatatgtcttgttctgttgttcttctaattggaattgtaccttcaggacatgattca 141  Q
    ||||||| |||||||||||||   | | | |||| |||||||||| | ||||||||| ||| ||||||||||||||||||| ||||||||||||||||||    
T  29311177 atcgatgtattttcttccaaaatggctaatagagtcagctcttaacaagtcttgttccgttattcttctaattggaattgttccttcaggacatgattca 29311078  T
Q  142 tcggataagctccacaattgaaagatgtcacttaaattatctatttggttgtgccatcttggtctttccggaggatcctg 221  Q
     | || || ||||||||||||  ||| |||||  ||||| || ||||||| ||||  |||||| |||| |||||||||||    
T  29311077 ccagacaatctccacaattgagggatatcactgtaattacctttttggttatgcccacttggtttttctggaggatcctg 29310998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 339 - 451
Target Start/End: Complemental strand, 29285581 - 29285469
Alignment:
Q  339 aataccaatggtttttgccctttcaatagaggatgatcaaaagctggttgtttatgcgttaaaacacaatctatgatatcaccgtcaggactctgcaaaa 438  Q
    |||||||||||||||||||||||||||| | |||||||||||||||||||||| || || ||||  ||||| ||  |||||||||| | |||||||||||    
T  29285581 aataccaatggtttttgccctttcaataaatgatgatcaaaagctggttgtttgtgagtcaaaatgcaatcaatagtatcaccgtcggaactctgcaaaa 29285482  T
Q  439 ataaacacaaaca 451  Q
    ||| |||||||||    
T  29285481 atatacacaaaca 29285469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 340 - 451
Target Start/End: Complemental strand, 29340366 - 29340255
Alignment:
Q  340 ataccaatggtttttgccctttcaatagaggatgatcaaaagctggttgtttatgcgttaaaacacaatctatgatatcaccgtcaggactctgcaaaaa 439  Q
    |||||||||||||||||||||||||||  ||||||||||||||| |||||||||| || |||| ||| ||||| |||||||| ||||||||||| ||||     
T  29340366 ataccaatggtttttgccctttcaataagggatgatcaaaagctagttgtttatgagtcaaaatacagtctattatatcaccatcaggactctgtaaaat 29340267  T
Q  440 taaacacaaaca 451  Q
    | || |||||||    
T  29340266 tgaaaacaaaca 29340255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 339 - 445
Target Start/End: Complemental strand, 29357198 - 29357092
Alignment:
Q  339 aataccaatggtttttgccctttcaatagaggatgatcaaaagctggttgtttatgcgttaaaacacaatctatgatatcaccgtcaggactctgcaaaa 438  Q
    |||||||||||||||   |||||||||| ||||||||| ||||| ||||||||||| || |||||||| |||||||||||||| || |||||||||||||    
T  29357198 aataccaatggttttgttcctttcaataaaggatgatcgaaagccggttgtttatgagtcaaaacacagtctatgatatcaccatcgggactctgcaaaa 29357099  T
Q  439 ataaaca 445  Q
    || ||||    
T  29357098 atgaaca 29357092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 72 - 221
Target Start/End: Complemental strand, 29363998 - 29363849
Alignment:
Q  72 agagccagctcttaatatgtcttgttctgttgttcttctaattggaattgtaccttcaggacatgattcatcggataagctccacaattgaaagatgtca 171  Q
    |||| |||||||||| | ||||||||||||  ||||||||| ||||||||| || |||||||| |||||| | ||||| ||||||||||||||| |||||    
T  29363998 agagtcagctcttaaaaggtcttgttctgtaattcttctaactggaattgttccatcaggacaagattcacccgataaactccacaattgaaagttgtca 29363899  T
Q  172 cttaaattatctatttggttgtgccatcttggtctttccggaggatcctg 221  Q
    || ||||||   |||||||| |  | | |||||||||| |||||||||||    
T  29363898 ctaaaattactcatttggttatatcttgttggtctttctggaggatcctg 29363849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 337 - 432
Target Start/End: Original strand, 29215276 - 29215371
Alignment:
Q  337 aaaataccaatggtttttgccctttcaatagaggatgatcaaaagctggttgtttatgcgttaaaacacaatctatgatatcaccgtcaggactct 432  Q
    ||||||||||||||||||| ||| ||||   ||||||||||||||| ||||||||||| | || ||||||||||||||||||||| ||||||||||    
T  29215276 aaaataccaatggtttttgtcctctcaacgtaggatgatcaaaagccggttgtttatgagatacaacacaatctatgatatcaccatcaggactct 29215371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 340 - 440
Target Start/End: Complemental strand, 29245517 - 29245417
Alignment:
Q  340 ataccaatggtttttgccctttcaatagaggatgatcaaaagctggttgtttatgcgttaaaacacaatctatgatatcaccgtcaggactctgcaaaaa 439  Q
    |||||||||||||||| |||||||||| ||||||||||||||||||||||||||| || ||||  ||||| || |||||||| || | | ||||||||||    
T  29245517 ataccaatggtttttgtcctttcaataaaggatgatcaaaagctggttgtttatgagtcaaaatgcaatcgataatatcaccatcggaaatctgcaaaaa 29245418  T
Q  440 t 440  Q
    |    
T  29245417 t 29245417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 79 - 190
Target Start/End: Complemental strand, 29340618 - 29340507
Alignment:
Q  79 gctcttaatatgtcttgttctgttgttcttctaattggaattgtaccttcaggacatgattcatcggataagctccacaattgaaagatgtcacttaaat 178  Q
    |||||||| | ||||||||| ||||||||||||| ||||||||| ||||| |||||||||||| | || ||| ||||||||||||| |||| ||| || |    
T  29340618 gctcttaacaagtcttgttcggttgttcttctaactggaattgttccttcgggacatgattcaccagacaaggtccacaattgaaatatgttactgaagt 29340519  T
Q  179 tatctatttggt 190  Q
    || || ||||||    
T  29340518 tacctgtttggt 29340507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 49 - 155
Target Start/End: Complemental strand, 29234313 - 29234207
Alignment:
Q  49 aattttcttccaaatctgtttaaagagccagctcttaatatgtcttgttctgttgttcttctaattggaattgtaccttcaggacatgattcatcggata 148  Q
    ||||||||||||||| || | | |||||| ||||||||||||||||| ||| ||||||||| |||||||||||   |||| |||||||||||| |  |||    
T  29234313 aattttcttccaaatttgctaatagagccggctcttaatatgtcttgctcttttgttcttccaattggaattgattcttcgggacatgattcaccatata 29234214  T
Q  149 agctcca 155  Q
    |||||||    
T  29234213 agctcca 29234207  T

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Target: chr8; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 49 - 165
Target Start/End: Original strand, 29215006 - 29215122
Alignment:
Q  49 aattttcttccaaatctgtttaaagagccagctcttaatatgtcttgttctgttgttcttctaattggaattgtaccttcaggacatgattcatcggata 148  Q
    ||||||||||||||| |||| | ||||| ||||||||| || ||   |||| || |||||||||| |||||||| ||||| |||||||||||| | || |    
T  29215006 aattttcttccaaatgtgttaatagagcaagctcttaacatatcaccttcttttattcttctaatcggaattgttccttctggacatgattcacctgaaa 29215105  T
Q  149 agctccacaattgaaag 165  Q
    | |||||||||||||||    
T  29215106 aactccacaattgaaag 29215122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 337 - 449
Target Start/End: Complemental strand, 29223621 - 29223509
Alignment:
Q  337 aaaataccaatggtttttgccctttcaatagaggatgatcaaaagctggttgtttatgcgttaaaacacaatctatgatatcaccgtcaggactctgcaa 436  Q
    |||||||||||| ||||||  |||||||||||| |||||| |||||| |||||||||     | |||||||||||| ||||| || || |||||||||||    
T  29223621 aaaataccaatgatttttgttctttcaatagagaatgatcgaaagctagttgtttatcaaacacaacacaatctattatatcgccatcgggactctgcaa 29223522  T
Q  437 aaataaacacaaa 449  Q
    |||| ||||||||    
T  29223521 aaatgaacacaaa 29223509  T

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Target: chr8; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 80 - 164
Target Start/End: Complemental strand, 29317656 - 29317572
Alignment:
Q  80 ctcttaatatgtcttgttctgttgttcttctaattggaattgtaccttcaggacatgattcatcggataagctccacaattgaaa 164  Q
    ||||||| | ||||||||||||| ||||||||| ||||||||| || || |||||||||||| | || |||||||||||||||||    
T  29317656 ctcttaacacgtcttgttctgttattcttctaactggaattgttccatcgggacatgattcaccagacaagctccacaattgaaa 29317572  T

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Target: chr8; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 78 - 216
Target Start/End: Complemental strand, 29254076 - 29253938
Alignment:
Q  78 agctcttaatatgtcttgttctgttgttcttctaattggaattgtaccttcaggacatgattcatcggataagctccacaattgaaagatgtcacttaaa 177  Q
    ||||||||| || |||| || | |||||||||||||||| ||||| ||    |||||||||||||| | |||| |||||||||||||| ||||||| |||    
T  29254076 agctcttaagatatcttctttttttgttcttctaattgggattgttccaatcggacatgattcatcaggtaagttccacaattgaaagttgtcactcaaa 29253977  T
Q  178 ttatctatttggttgtgccatcttggtctttccggagga 216  Q
     ||||  ||||||| |  | |||||||||| ||||||||    
T  29253976 atatccttttggttattgcctcttggtcttaccggagga 29253938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 102 - 173
Target Start/End: Complemental strand, 29223831 - 29223760
Alignment:
Q  102 tgttcttctaattggaattgtaccttcaggacatgattcatcggataagctccacaattgaaagatgtcact 173  Q
    ||||| |||||||| ||| ||  |||| |||||||||||| | ||||||||||||||||||||| |||||||    
T  29223831 tgttcgtctaattgcaatcgtttcttctggacatgattcaccagataagctccacaattgaaagttgtcact 29223760  T

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Target: chr2 (Bit Score: 64; Significance: 9e-28; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 49 - 220
Target Start/End: Original strand, 30919558 - 30919729
Alignment:
Q  49 aattttcttccaaatctgtttaaagagccagctcttaatatgtcttgttctgttgttcttctaattggaattgtaccttcaggacatgattcatcggata 148  Q
    ||||||||||||||  |||| | ||||| ||||||||||||||||| |||| ||||||||||||||||||  |  ||||| |||||||||||  | ||||    
T  30919558 aattttcttccaaacgtgttaatagagctagctcttaatatgtcttcttcttttgttcttctaattggaacagatccttctggacatgattcgccagata 30919657  T
Q  149 agctccacaattgaaagatgtcacttaaattatctatttggttgtgccatcttggtctttccggaggatcct 220  Q
    ||||||| ||||||||| ||||||| |||  |||  ||||||| || | ||||||||||||  |||||||||    
T  30919658 agctccataattgaaagttgtcactcaaaagatccgtttggttatgacctcttggtctttcttgaggatcct 30919729  T

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Target: chr2; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 49 - 164
Target Start/End: Original strand, 30931045 - 30931160
Alignment:
Q  49 aattttcttccaaatctgtttaaagagccagctcttaatatgtcttgttctgttgttcttctaattggaattgtaccttcaggacatgattcatcggata 148  Q
    ||||||||||||||  |||  | ||||| ||||||||||||||||| |||| ||| |||||||||||||||||| ||||| ||||||||||||||  |||    
T  30931045 aattttcttccaaacgtgtcaatagagctagctcttaatatgtcttcttcttttgctcttctaattggaattgttccttctggacatgattcatcatata 30931144  T
Q  149 agctccacaattgaaa 164  Q
    ||||||||||||||||    
T  30931145 agctccacaattgaaa 30931160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 339 - 451
Target Start/End: Original strand, 30931326 - 30931438
Alignment:
Q  339 aataccaatggtttttgccctttcaatagaggatgatcaaaagctggttgtttatgcgttaaaacacaatctatgatatcaccgtcaggactctgcaaaa 438  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |  | ||| |||||||| ||||| || || | |||||| ||||    
T  30931326 aataccaatggtttttgtcctttcaatagaggatgatcaaaagctggttgtttatgagacacaacgcaatctataatatcgccatccgaactctgtaaaa 30931425  T
Q  439 ataaacacaaaca 451  Q
    || |||| |||||    
T  30931426 atgaacataaaca 30931438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 49 - 165
Target Start/End: Original strand, 30910110 - 30910226
Alignment:
Q  49 aattttcttccaaatctgtttaaagagccagctcttaatatgtcttgttctgttgttcttctaattggaattgtaccttcaggacatgattcatcggata 148  Q
    ||||||||||||||  |||| | ||||  |||||||||||| || | || | |||||||||||||||||||||| ||||| | |||||||||| | ||||    
T  30910110 aattttcttccaaacgtgttaacagagttagctcttaatatatcctctttttttgttcttctaattggaattgttccttctgaacatgattcacctgata 30910209  T
Q  149 agctccacaattgaaag 165  Q
    | |||||||||||||||    
T  30910210 aactccacaattgaaag 30910226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 337 - 433
Target Start/End: Original strand, 30919834 - 30919930
Alignment:
Q  337 aaaataccaatggtttttgccctttcaatagaggatgatcaaaagctggttgtttatgcgttaaaacacaatctatgatatcaccgtcaggactctg 433  Q
    ||||||||| ||||||||| ||||| |||| |||||||||||||||||||||||| || |  | |||||| ||||| ||||| ||||| ||||||||    
T  30919834 aaaataccagtggtttttgtccttttaataaaggatgatcaaaagctggttgtttgtgagacacaacacagtctataatatcgccgtccggactctg 30919930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 337 - 433
Target Start/End: Original strand, 30910385 - 30910481
Alignment:
Q  337 aaaataccaatggtttttgccctttcaatagaggatgatcaaaagctggttgtttatgcgttaaaacacaatctatgatatcaccgtcaggactctg 433  Q
    ||||||||||| ||||||| |||||||| ||| |||||||||||||||||||||| || |  | |||||| ||||| ||||| || || ||||||||    
T  30910385 aaaataccaatagtttttgtcctttcaacagaagatgatcaaaagctggttgtttgtgagacagaacacagtctataatatcgccatctggactctg 30910481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 49 - 155
Target Start/End: Original strand, 14497538 - 14497644
Alignment:
Q  49 aattttcttccaaatctgtttaaagagccagctcttaatatgtcttgttctgttgttcttctaattggaattgtaccttcaggacatgattcatcggata 148  Q
    ||||||||||||||| |||| | ||| |  || ||||| |||||||||||||||||||||||||| |||||||| ||||| |||||||||||| | || |    
T  14497538 aattttcttccaaatgtgttgatagaacttgcccttaacatgtcttgttctgttgttcttctaatcggaattgttccttctggacatgattcacccgaca 14497637  T
Q  149 agctcca 155  Q
    |||||||    
T  14497638 agctcca 14497644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 432
Target Start/End: Original strand, 14497823 - 14497914
Alignment:
Q  341 taccaatggtttttgccctttcaatagaggatgatcaaaagctggttgtttatgcgttaaaacacaatctatgatatcaccgtcaggactct 432  Q
    ||||| |||| |||| ||||| || | ||||||||||||||||||||||| ||| |    ||| || ||||| |||||||||||||||||||    
T  14497823 taccagtggtctttgtccttttaacataggatgatcaaaagctggttgttgatgagacgcaacgcattctataatatcaccgtcaggactct 14497914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 341 - 436
Target Start/End: Original strand, 43729765 - 43729860
Alignment:
Q  341 taccaatggtttttgccctttcaatagaggatgatcaaaagctggttgtttatgcgttaaaacacaatctatgatatcaccgtcaggactctgcaa 436  Q
    ||||||||||||||| ||||| | ||| ||||| |||||||||||||||| ||| | || || ||||||||| | ||| || || |||||||||||    
T  43729765 taccaatggtttttgtcctttgagtagtggatggtcaaaagctggttgttgatgagatataatacaatctatcaaatctccatctggactctgcaa 43729860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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