View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21383_low_5 (Length: 506)

Name: NF21383_low_5
Description: NF21383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21383_low_5
NF21383_low_5
[»] chr6 (17 HSPs)
chr6 (1-487)||(2088194-2088680)
chr6 (249-469)||(2097759-2097986)
chr6 (249-487)||(2106228-2106475)
chr6 (255-371)||(2041895-2042016)
chr6 (249-342)||(2054007-2054100)
chr6 (249-457)||(2136276-2136485)
chr6 (264-342)||(2047446-2047524)
chr6 (26-140)||(2098319-2098432)
chr6 (26-140)||(2106779-2106890)
chr6 (264-333)||(2058127-2058196)
chr6 (421-472)||(2036759-2036810)
chr6 (326-364)||(2082466-2082504)
chr6 (88-137)||(2065558-2065607)
chr6 (441-473)||(2053866-2053898)
chr6 (75-111)||(2054364-2054400)
chr6 (75-111)||(2058333-2058369)
chr6 (443-487)||(2062389-2062433)


Alignment Details
Target: chr6 (Bit Score: 463; Significance: 0; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 1 - 487
Target Start/End: Complemental strand, 2088680 - 2088194
Alignment:
Q  1 tgcatgagtgaaagtcacccttcaactccaaagcctcgttacataagcgccttaaatttgcattgtagatgttacatgaacccttaaactgttgcaaaac 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2088680 tgcatgagtgaaagtcacccttcagctccaaagcctcgttacataagctccttaaatttgcattgtagatgttacatgaacccttaaactgttgcaaaac 2088581  T
Q  101 caataacatatcttagtatattgtttagaaaagaaaaatgaatcagctccataatatataacctcagcagcatataatagaacaaacctggttgacaact 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2088580 caataacatatcttagtatattgtttagaaaagaaaaatgaatcagctccataatatataacctcagcagcatataatagaacaaacctggttgacaact 2088481  T
Q  201 agctcagagtcccctttgatagcgatgtgatgatatccttttcggatggcttgtttcattcctaaaatcaaagcgcgatactcagcaacattatttgttt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2088480 agctcagagtcccctttgatagcgatgtgatgatatccttttcggatggcttgtttcattcctaaaatcaaagcgcgatactcagcaacattatttgttt 2088381  T
Q  301 ggtagcccaatccttcacggaatcgatagagctacaaagaaacataagagttagctacattttacaaataacatataatataaagctcagatgaattgtt 400  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  2088380 ggtagcctaatccttcacggaatcgatagagctacaaagaaacataagggttagctacattttataaataacatataatataaagctcagatgaattgtt 2088281  T
Q  401 gagtaaagttggtaccacattcccattttcagaacgcagtatagctcctgcaccagctggtccgggatttccacgggatgcgccatc 487  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  2088280 gagtaaagttggtaccacattcccattttcagaacgcagtatagctcctgcaccagctggtccgggatttccacgcgatgcgccatc 2088194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 249 - 469
Target Start/End: Complemental strand, 2097986 - 2097759
Alignment:
Q  249 gcttgtttcattcctaaaatcaaagcgcgatactcagcaacattatttgtttggtagcccaatccttcacggaatcgatagagctacaaagaaacataag 348  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||||||| || || | |||||| |||||||||||||||||||||||||||||||    
T  2097986 gcttgtttcagtcctaaaatcaatgcgcgatactcagcaacattatttgtttgataaccaagtccttcgcggaatcgatagagctacaaagaaacataag 2097887  T
Q  349 agtt-----agctacattttacaaataa--catataatataaagctcagatgaattgttgagtaaagttggtaccacattcccattttcagaacgcagta 441  Q
    ||||     |||||||||||| ||||||    |||||||||| |   | |||||||||||    |||| | ||||| | |||||| ||||||||||||||    
T  2097886 agttagcttagctacattttataaataaatagtataatataatgtctaaatgaattgttgcaccaagtagataccagactcccatcttcagaacgcagta 2097787  T
Q  442 tagctcctgcaccagctggtccgggatt 469  Q
    ||||||| ||||||||||||||||||||    
T  2097786 tagctccggcaccagctggtccgggatt 2097759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 249 - 487
Target Start/End: Complemental strand, 2106475 - 2106228
Alignment:
Q  249 gcttgtttcattcctaaaatcaaagcgcgatactcagcaacattatttgtttggtagcccaatccttcacggaatcgatagagctacaaagaaac--ata 346  Q
    |||||||||| |||||||||||  || |||||||||||||||||||||||||| || || | |||||| ||||||||||||||||||||||||||  |||    
T  2106475 gcttgtttcagtcctaaaatcagtgcacgatactcagcaacattatttgtttgataaccaagtccttcgcggaatcgatagagctacaaagaaacatata 2106376  T
Q  347 agag-----ttagctacattttacaaataa--catataatataaagctcagatgaattgttgagtaaagttggtaccacattcccattttcagaacgcag 439  Q
    ||||     |||||||||||||| ||||||    |||||||||| |  || |||||||||||   ||||| | ||||| | |||||| ||||||||||||    
T  2106375 agagttagcttagctacattttataaataaatagtataatataatgtccaaatgaattgttgcacaaagtagataccagactcccatcttcagaacgcag 2106276  T
Q  440 tatagctcctgcaccagctggtccgggatttccacgggatgcgccatc 487  Q
    ||||||||| |||||||||||||||||||| |||| || ||| |||||    
T  2106275 tatagctccggcaccagctggtccgggattcccactggctgcaccatc 2106228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 255 - 371
Target Start/End: Complemental strand, 2042016 - 2041895
Alignment:
Q  255 ttcattcctaaaatcaaagcgcgatactcagcaacattatttgtttggtagcccaatccttcacggaatcgatagagcta-----caaagaaacataaga 349  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||| |||| |||||      ||||||||||||||    
T  2042016 ttcaatcctaagatcaaagcgcgatactcagcaacattatttgtttgatagcccagtccttctcggaattgatatagctatgaagaaaagaaacataaga 2041917  T
Q  350 gttagctacattttacaaataa 371  Q
    ||||||||||||||| ||||||    
T  2041916 gttagctacattttataaataa 2041895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 249 - 342
Target Start/End: Complemental strand, 2054100 - 2054007
Alignment:
Q  249 gcttgtttcattcctaaaatcaaagcgcgatactcagcaacattatttgtttggtagcccaatccttcacggaatcgatagagctacaaagaaa 342  Q
    |||||||||| ||| || ||||||||||| ||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||| | ||||||    
T  2054100 gcttgtttcagtcccaatatcaaagcgcggtactcagcaacgttatttgtttgatagcccagtccttcacggaatcgatagagctgcgaagaaa 2054007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 249 - 457
Target Start/End: Original strand, 2136276 - 2136485
Alignment:
Q  249 gcttgtttcattcctaaaatcaaagcgcgatactcagcaacattatttgtttggtagcccaatccttcacggaatcgatagagctacaaagaaacataag 348  Q
    ||||||||||  ||||||||||| || |||||||||||  | || | |||| | |  ||||||||||| || |||| ||||| |||||||||||||||||    
T  2136276 gcttgtttcagacctaaaatcaatgctcgatactcagcctccttttgtgttagattccccaatccttcgcgaaatccatagaactacaaagaaacataag 2136375  T
Q  349 agttagctacattttacaaataa-catataatataaagctcagatgaattgttgagtaaagttggtaccacattcccattttcagaacgcagtatagctc 447  Q
      ||  |||||||||| ||||||  | ||||||||||   || |||||||||||  |||||| | ||||| | |||||| ||||||  |||||| |||||    
T  2136376 cattgcctacattttataaataattaaataatataaaatccaaatgaattgttgcataaagtagataccagactcccatcttcagatagcagtaaagctc 2136475  T
Q  448 ctgcaccagc 457  Q
    ||||||||||    
T  2136476 ctgcaccagc 2136485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 264 - 342
Target Start/End: Complemental strand, 2047524 - 2047446
Alignment:
Q  264 aaaatcaaagcgcgatactcagcaacattatttgtttggtagcccaatccttcacggaatcgatagagctacaaagaaa 342  Q
    ||||| ||||| |||||||||||| | ||||||||||| ||||||| |||||||||||||||||||||||  |||||||    
T  2047524 aaaattaaagcacgatactcagcagcgttatttgtttgatagcccagtccttcacggaatcgatagagctgtaaagaaa 2047446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 26 - 140
Target Start/End: Complemental strand, 2098432 - 2098319
Alignment:
Q  26 ctccaaagcctcgttacataagcgccttaaatttgcattgtagatgttacatgaacccttaaactgttgcaaaaccaataacatatcttagtatattgtt 125  Q
    |||||| ||||| || ||||||  ||||||||  ||||||| |||||| ||| |||| || | |||||||||||| |||||||||| || ||| ||||||    
T  2098432 ctccaaggcctcattgcataagttccttaaatgagcattgttgatgttccataaacctttcagctgttgcaaaac-aataacatatgttggtaaattgtt 2098334  T
Q  126 tagaaaagaaaaatg 140  Q
    |||||||||||||||    
T  2098333 tagaaaagaaaaatg 2098319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 140
Target Start/End: Complemental strand, 2106890 - 2106779
Alignment:
Q  26 ctccaaagcctcgttacataagcgccttaaatttgcattgtagatgttacatgaacccttaaactgttgcaaaaccaataacatatcttagtatattgtt 125  Q
    |||||||||||| || ||||||  ||||||||  ||||||| |||||| ||| |||| || ||||||||||||| |||||||  || || ||| ||||||    
T  2106890 ctccaaagcctcattgcataagttccttaaataagcattgttgatgttccataaacctttcaactgttgcaaaa-caataac--atgttggtaaattgtt 2106794  T
Q  126 tagaaaagaaaaatg 140  Q
    |||||||||||||||    
T  2106793 tagaaaagaaaaatg 2106779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 264 - 333
Target Start/End: Complemental strand, 2058196 - 2058127
Alignment:
Q  264 aaaatcaaagcgcgatactcagcaacattatttgtttggtagcccaatccttcacggaatcgatagagct 333  Q
    ||||| ||||||||||||||||||  | ||| ||| || | ||||| |||||||||||||||||||||||    
T  2058196 aaaattaaagcgcgatactcagcagaactatctgtctgatcgcccagtccttcacggaatcgatagagct 2058127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 472
Target Start/End: Complemental strand, 2036810 - 2036759
Alignment:
Q  421 tcccattttcagaacgcagtatagctcctgcaccagctggtccgggatttcc 472  Q
    |||||| ||||| ||||||||| ||||| |||||||||||||| ||||||||    
T  2036810 tcccatcttcagcacgcagtattgctccagcaccagctggtccaggatttcc 2036759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 364
Target Start/End: Complemental strand, 2082504 - 2082466
Alignment:
Q  326 atagagctacaaagaaacataagagttagctacatttta 364  Q
    |||||||||||||| |||||||||||| |||||||||||    
T  2082504 atagagctacaaaggaacataagagttggctacatttta 2082466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 137
Target Start/End: Complemental strand, 2065607 - 2065558
Alignment:
Q  88 actgttgcaaaaccaataacatatcttagtatattgtttagaaaagaaaa 137  Q
    ||||||||||||| |||||||||| || ||| ||||||||| ||||||||    
T  2065607 actgttgcaaaacaaataacatatgttggtaaattgtttagcaaagaaaa 2065558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 473
Target Start/End: Complemental strand, 2053898 - 2053866
Alignment:
Q  441 atagctcctgcaccagctggtccgggatttcca 473  Q
    ||||||||||||||||||||||| |||||||||    
T  2053898 atagctcctgcaccagctggtccaggatttcca 2053866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 75 - 111
Target Start/End: Complemental strand, 2054400 - 2054364
Alignment:
Q  75 catgaacccttaaactgttgcaaaaccaataacatat 111  Q
    |||||||||  ||||||||||||||||||||||||||    
T  2054400 catgaacccagaaactgttgcaaaaccaataacatat 2054364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 75 - 111
Target Start/End: Complemental strand, 2058369 - 2058333
Alignment:
Q  75 catgaacccttaaactgttgcaaaaccaataacatat 111  Q
    |||||||||  ||||||||||||||||||||||||||    
T  2058369 catgaacccaaaaactgttgcaaaaccaataacatat 2058333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 443 - 487
Target Start/End: Complemental strand, 2062433 - 2062389
Alignment:
Q  443 agctcctgcaccagctggtccgggatttccacgggatgcgccatc 487  Q
    ||||||||||||||||||||| ||||||||||  ||||| |||||    
T  2062433 agctcctgcaccagctggtccaggatttccacctgatgcaccatc 2062389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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