View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21383_low_6 (Length: 491)
Name: NF21383_low_6
Description: NF21383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21383_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 20 - 417
Target Start/End: Complemental strand, 1836667 - 1836270
Alignment:
| Q |
20 |
gtaggtgcacaaaatttgtgtttgtatgtgctgctacacnnnnnnnnnnnacttagtttatttaattgtgaaaatgcttatgtgcaatttagcacggatc |
119 |
Q |
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| T |
1836667 |
gtaggtgcacaaaatttgtgtttgtatgtgctgctacactttttttttttacttagtttatttaattgtgaaaatgcttatgtgcaatttagcacggatg |
1836568 |
T |
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| Q |
120 |
agatttttatattgtatattaaatgttgactgaaagtgaaattaagagcatggtaattaatgttagagtgacatgtgtgtgaccacttttgaacttgaaa |
219 |
Q |
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| T |
1836567 |
agatttttatattgtatattaaatgttgattgaaagtgaaattaagagcatggtaattaatgttagagtgacatgtgtgtgaccacttttgaacttgaaa |
1836468 |
T |
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| Q |
220 |
ttatgggaatggattggcgcaatgtttatggagcaataataaagaattggattaagtgacacaattcagtcccctgtttcataacgcgttttcagaactt |
319 |
Q |
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| T |
1836467 |
ttatgggaatggattggcgcaatgtttatggagcaataataaagaattggattaagtgacacaattcagtcccctgtttcataacgcgttttcagaactt |
1836368 |
T |
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| Q |
320 |
aggtgtcatgggattttagaataccactaattcaaattcgtggaatctcatataattaaggttttatttggaaatcttagatcagcaaggaggggata |
417 |
Q |
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| T |
1836367 |
aggtgtcatgggattttagaataccactaatccaaattcgtggaatctcatataattaaggttttatttggaaatctttgatcagcaaggaggggata |
1836270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 416 - 482
Target Start/End: Complemental strand, 1836240 - 1836174
Alignment:
| Q |
416 |
tactttatgtttatttatcagtacacactgtaagattcataagtcttgtgagaccctagatattctt |
482 |
Q |
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| T |
1836240 |
tactttatgtttatttatcagtacacactgtaagattcataagtcttgtgagaccctagattttctt |
1836174 |
T |
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