View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21383_low_7 (Length: 461)
Name: NF21383_low_7
Description: NF21383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21383_low_7 |
 | |
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| [»] scaffold0480 (1 HSPs) |
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| [»] scaffold0226 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 397; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 24 - 452
Target Start/End: Complemental strand, 15915589 - 15915161
Alignment:
| Q |
24 |
agaagcagttaacattttccaacataggaatagtaaaaaagctttatttacaagagtagggtctttggcagccaatcccccctcaactctgggcttacaa |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15915589 |
agaagcagttaacattttccaacataggaatagtaaaaaagctttatttacaagagtcgggtctttggcagccaatcccccctcaactctgggcttacaa |
15915490 |
T |
|
| Q |
124 |
acaacattccatgccactgtacatatctttctttgttcaatattgccactccagataaagttcttaatcatcccgactagcttcttaacaccttttgagt |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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|
| T |
15915489 |
acaacattccatgccactgtacatatctttctttgttcaatattgccactccagataaagttcttaatcatcccgactagcttcttaacatcctttgagt |
15915390 |
T |
|
| Q |
224 |
aagatggctcattttaggttcagccatctatcttgcacaaacccctactacaaaagttatatcaggtctgcttgcagtaagatacaatagacttccaatc |
323 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
15915389 |
aagatggctcattttaggttcagcctgctatcttgcacaaacccctactacaaaagttatatcaggtctgtttgcagtaagatacaatagacttccaatc |
15915290 |
T |
|
| Q |
324 |
atgctcctatatatacatgctttgatcaacagcaacaccattttaatctttggacaacttcaaatgagtagctgctggtgttcttttatgactaccatta |
423 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15915289 |
atgctcctatatatacatgctttgatcaacaacaacaccattttcatctttggacaacttcaaatgagtagctgctggtgttcttttatgactaccatta |
15915190 |
T |
|
| Q |
424 |
tccataccaaacttcttcactatattctt |
452 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
15915189 |
tccataccaaacttcttcactatattctt |
15915161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 218 - 452
Target Start/End: Complemental strand, 20198246 - 20198016
Alignment:
| Q |
218 |
ttgagtaagatggctcattttaggttcagccatctatcttgcacaaacccctactacaaaagttatatcaggtctgcttgcagtaagatacaatagactt |
317 |
Q |
| |
|
|||||||||||| |||||||| |||||||| || |||||||| || ||||| ||||| || ||||| |||||||||||||||||||||| || ||| |
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|
| T |
20198246 |
ttgagtaagatgactcatttttggttcagcttgataccttgcacacacacctacaacaaatgtaatatctggtctgcttgcagtaagatacagtaaactc |
20198147 |
T |
|
| Q |
318 |
ccaatcatgctcctatatatacatgctttgatcaacagcaacaccattttaatctttggacaacttcaaatgagtagctgctggtgttcttttatgacta |
417 |
Q |
| |
|
||||||||||| | | ||||||||||||||||||| | |||| ||| ||| || || |||||||||||| || | ||| ||| | ||||||| | |
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|
| T |
20198146 |
ccaatcatgct----tctgtacatgctttgatcaacagatataccactttcatcctttttcagcttcaaatgagtggcagttggagttttcttatgacca |
20198051 |
T |
|
| Q |
418 |
ccattatccataccaaacttcttcactatattctt |
452 |
Q |
| |
|
||||||| || ||||| ||||||||||| ||||| |
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|
| T |
20198050 |
ccattattcaagccaaatttcttcactatgttctt |
20198016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 218 - 328
Target Start/End: Complemental strand, 20844383 - 20844273
Alignment:
| Q |
218 |
ttgagtaagatggctcattttaggttcagccatctatcttgcacaaacccctactacaaaagttatatcaggtctgcttgcagtaagatacaatagactt |
317 |
Q |
| |
|
|||||||||||| ||||| || |||||||| || ||||||||||| ||||| ||||| ||||| | || ||||||||||||||||| | || ||| |
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|
| T |
20844383 |
ttgagtaagatgactcatctttggttcagcttgataccttgcacaaacacctacaacaaactttatacctggcctgcttgcagtaagatatagtaaactc |
20844284 |
T |
|
| Q |
318 |
ccaatcatgct |
328 |
Q |
| |
|
||||||||||| |
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|
| T |
20844283 |
ccaatcatgct |
20844273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 218 - 328
Target Start/End: Complemental strand, 22888866 - 22888756
Alignment:
| Q |
218 |
ttgagtaagatggctcattttaggttcagccatctatcttgcacaaacccctactacaaaagttatatcaggtctgcttgcagtaagatacaatagactt |
317 |
Q |
| |
|
|||||||||||| ||||| || |||||||| || |||||||| || ||||| ||||| || ||||| || ||||||||||||||||| | || ||| |
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|
| T |
22888866 |
ttgagtaagatgactcatctttggttcagcttgataccttgcacacacacctacaacaaacgtaatatctggcctgcttgcagtaagatatagtaaactc |
22888767 |
T |
|
| Q |
318 |
ccaatcatgct |
328 |
Q |
| |
|
||||||||||| |
|
|
| T |
22888766 |
ccaatcatgct |
22888756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 106; Significance: 7e-53; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 218 - 452
Target Start/End: Original strand, 24388128 - 24388358
Alignment:
| Q |
218 |
ttgagtaagatggctcattttaggttcagccatctatcttgcacaaacccctactacaaaagttatatcaggtctgcttgcagtaagatacaatagactt |
317 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||| ||||| |||||||| ||||| ||||| || | |||||||||| |||||||||| || || |
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|
| T |
24388128 |
ttgagtaagatgactcattttaggttcagcttggtatctagcacacacccctacaacaaatgttatgtctgatctgcttgcaataagatacaacaggttt |
24388227 |
T |
|
| Q |
318 |
ccaatcatgctcctatatatacatgctttgatcaacagcaacaccattttaatctttggacaacttcaaatgagtagctgctggtgttcttttatgacta |
417 |
Q |
| |
|
|||||||||||| || |||||||||||||| ||| |||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||| || |
|
|
| T |
24388228 |
ccaatcatgctc----atgtacatgctttgatctacaacaacacatgtttcatctttggacaacttcaaatgagtagctgttggtgttcttttatggctt |
24388323 |
T |
|
| Q |
418 |
ccattatccataccaaacttcttcactatattctt |
452 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
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|
| T |
24388324 |
gcattttccataccaaacttcttcactatattctt |
24388358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 277 - 416
Target Start/End: Original strand, 18675521 - 18675656
Alignment:
| Q |
277 |
aagttatatcaggtctgcttgcagtaagatacaatagacttccaatcatgctcctatatatacatgctttgatcaacagcaacaccattttaatctttgg |
376 |
Q |
| |
|
||||||||||||||||||||||||| ||||| || ||||| ||||||| || || || ||||||||||||||| ||||| |||| | |||||| | |
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|
| T |
18675521 |
aagttatatcaggtctgcttgcagtgagatataacagactctcaatcatacttctgta----catgctttgatcaactgcaacttcattctcatcttttg |
18675616 |
T |
|
| Q |
377 |
acaacttcaaatgagtagctgctggtgttcttttatgact |
416 |
Q |
| |
|
||| ||| || |||||||||||||||||||| |||||||| |
|
|
| T |
18675617 |
acagctttaagtgagtagctgctggtgttctcttatgact |
18675656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0480 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: scaffold0480
Description:
Target: scaffold0480; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 270 - 452
Target Start/End: Original strand, 12653 - 12831
Alignment:
| Q |
270 |
actacaaaagttatatcaggtctgcttgcagtaagatacaatagacttccaatcatgctcctatatatacatgctttgatcaacagcaacaccattttaa |
369 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| || |||||| |||||||||| ||||| || | ||||||||||| ||||||||| |||| |
|
|
| T |
12653 |
actacaaaagttatgtcaggtctgcttgcagtaagatataacagactttcaatcatgcttctata----caagttttgatcaacaacaacaccatcttaa |
12748 |
T |
|
| Q |
370 |
tctttggacaacttcaaatgagtagctgctggtgttcttttatgactaccattatccataccaaacttcttcactatattctt |
452 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||| ||||| |||| | |||| ||||||||||||||||||| ||| ||||| |
|
|
| T |
12749 |
tctttggataacttcaaatgagtagctattggtgtccttttgtgaccaacattctccataccaaacttcttcaatatgttctt |
12831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 252 - 434
Target Start/End: Original strand, 42787850 - 42788028
Alignment:
| Q |
252 |
tatcttgcacaaacccctactacaaaagttatatcaggtctgcttgcagtaagatacaatagacttccaatcatgctcctatatatacatgctttgatca |
351 |
Q |
| |
|
||||||||||| || |||| |||||||| | |||||||||||||| |||||||| | |||||||||||||| || || || || |||||||||| |
|
|
| T |
42787850 |
tatcttgcacacactcctagagcaaaagttttgtcaggtctgcttgctgtaagatatagaagacttccaatcatacttctgta----caggctttgatca |
42787945 |
T |
|
| Q |
352 |
acagcaacaccattttaatctttggacaacttcaaatgagtagctgctggtgttcttttatgactaccattatccataccaaa |
434 |
Q |
| |
|
||| | |||||||||| ||||||||||||||| || ||||| |||||||||||||| ||||||||| ||||||||| |||||| |
|
|
| T |
42787946 |
acaactacaccattttcatctttggacaactttaagtgagttgctgctggtgttctcttatgactagcattatccagaccaaa |
42788028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 252 - 452
Target Start/End: Original strand, 2078570 - 2078766
Alignment:
| Q |
252 |
tatcttgcacaaacccctactacaaaagttatatcaggtctgcttgcagtaagatacaatagacttccaatcatgctcctatatatacatgctttgatca |
351 |
Q |
| |
|
|||||||||||||| || || ||||||||||||||||||||||||| |||||||| | ||||||||| ||||| ||||| |||| | ||||||||| |
|
|
| T |
2078570 |
tatcttgcacaaactcccacagcaaaagttatatcaggtctgcttgctgtaagataaagtagacttcctatcatactcctgtataga----ctttgatca |
2078665 |
T |
|
| Q |
352 |
acagcaacaccattttaatctttggacaacttcaaatgagtagctgctggtgttcttttatgactaccattatccataccaaacttcttcactatattct |
451 |
Q |
| |
|
||||| || ||||||| ||| || |||| ||| | |||||| |||| ||| |||||||||||||| ||||||||| ||||| ||| |||| ||||||| |
|
|
| T |
2078666 |
acagctacgccattttcatcctttgacagctttagatgagtggctgttggagttcttttatgactggcattatccagtccaaatttcctcacaatattct |
2078765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 274 - 452
Target Start/End: Original strand, 26039695 - 26039869
Alignment:
| Q |
274 |
caaaagttatatcaggtctgcttgcagtaagatacaatagacttccaatcatgctcctatatatacatgctttgatcaacagcaacaccattttaatctt |
373 |
Q |
| |
|
||||||| ||||| | |||||||||||||||||||||| ||| ||||||||||| ||||| ||||||||||||||||| | |||| ||| ||| | |
|
|
| T |
26039695 |
caaaagtgatatctgacctgcttgcagtaagatacaataaactcccaatcatgcttctata----catgctttgatcaacagatataccactttcatcat |
26039790 |
T |
|
| Q |
374 |
tggacaacttcaaatgagtagctgctggtgttcttttatgactaccattatccataccaaacttcttcactatattctt |
452 |
Q |
| |
|
| | || |||||| ||||| | ||||| ||||| || |||| |||||||||||| ||||| |||||||| || ||||| |
|
|
| T |
26039791 |
ttgtcagcttcaagtgagtgacagctggagttctcttgtgaccaccattatccatgccaaatttcttcacaatgttctt |
26039869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0226 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0226
Description:
Target: scaffold0226; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 255 - 334
Target Start/End: Complemental strand, 11896 - 11817
Alignment:
| Q |
255 |
cttgcacaaacccctactacaaaagttatatcaggtctgcttgcagtaagatacaatagacttccaatcatgctcctata |
334 |
Q |
| |
|
|||||||| || ||||| ||||||| ||||| || ||||||||||||||||| |||| ||| ||||||||||| ||||| |
|
|
| T |
11896 |
cttgcacacacacctacagcaaaagtgatatctggcctgcttgcagtaagatataataaactcccaatcatgcttctata |
11817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 218 - 355
Target Start/End: Complemental strand, 15570012 - 15569879
Alignment:
| Q |
218 |
ttgagtaagatggctcattttaggttcagccatctatcttgcacaaacccctactacaaaagttatatcaggtctgcttgcagtaagatacaatagactt |
317 |
Q |
| |
|
|||||||||||| ||||| || ||||||| || |||||||| || ||||| |||||||| |||| || ||||||| ||||||||||| || ||| |
|
|
| T |
15570012 |
ttgagtaagatgactcatctttggttcagtttgataccttgcacacacacctacaacaaaagtaatatttggcctgcttgtagtaagatacagtaaactc |
15569913 |
T |
|
| Q |
318 |
ccaatcatgctcctatatatacatgctttgatcaacag |
355 |
Q |
| |
|
||||||||||| | | ||||||||||||||||||| |
|
|
| T |
15569912 |
ccaatcatgct----tctgtacatgctttgatcaacag |
15569879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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