View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21383_low_8 (Length: 426)
Name: NF21383_low_8
Description: NF21383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21383_low_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 397; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 8 - 408
Target Start/End: Original strand, 2331975 - 2332375
Alignment:
| Q |
8 |
gacatcatcacatatgcctacacaccttcacattctaagcttccagcctcaacttcttcataatttcaccttactaattatgttggacttgaaacttcac |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2331975 |
gacatcatcacatatgcctacacaccttcacattctaagcttccagcctcaacttcttcataatttcaccttactaattatgttggacttgaaacttcac |
2332074 |
T |
|
| Q |
108 |
cctgctacacctcgacatatctactatatcagactgcctttcactgctaacaaaaacctgctgcaaagtaaacttaaaacatattgcaggccttaaattc |
207 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2332075 |
cctgctacacctcaacatatctactatatcagactgcctttcactgctaacaaaaacctgctgcaaagtaaacttaaaacatattgcaggccttaaattc |
2332174 |
T |
|
| Q |
208 |
caatatttgaaacaaaacaccagccaattagacctttcatcatccttggttttggttgcttcttggaactccaatctgtggtcttaatttcagggttgta |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2332175 |
caatatttgaaacaaaacaccagccaattagacctttcatcatccttggttttggttgcttcttggaactccaatctgtggtcttaatttcagggttgta |
2332274 |
T |
|
| Q |
308 |
atttgtaattttgagtgcagaaatgatgcaaagaatagagtggacaaatctgagtaattatggccatagtaaaatggtggttgctgatttttctcaataa |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2332275 |
atttgtaattttgagtgcagaaatgatgcaaagaatagagtggacaaatctgagtaattatggccatagtaaaatggtggttgctgatttttctcaataa |
2332374 |
T |
|
| Q |
408 |
c |
408 |
Q |
| |
|
| |
|
|
| T |
2332375 |
c |
2332375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 348
Target Start/End: Original strand, 2294682 - 2294752
Alignment:
| Q |
281 |
atctgtggtcttaatttc-agggttgtaatttgtaattttga--gtgcagaaatgatgcaaagaatagagt |
348 |
Q |
| |
|
|||||||||||||| || |||||||||| |||||||||||| |||||||| ||||||| |||||||||| |
|
|
| T |
2294682 |
atctgtggtcttaaattatagggttgtaacttgtaattttgagtgtgcagaagtgatgcatagaatagagt |
2294752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 52 - 199
Target Start/End: Original strand, 7298086 - 7298238
Alignment:
| Q |
52 |
agcctcaacttcttcataatttcaccttactaattatgttggacttgaaacttcaccctgctacacctcgaca---tatctactatatcag-actgcctt |
147 |
Q |
| |
|
||||||||| ||||||| |||||| ||||||| ||||||||||||| ||||| |||| || || || || ||| ||||| ||||||||| | |||| | |
|
|
| T |
7298086 |
agcctcaacctcttcattatttcagcttactagttatgttggacttaaaactccaccttgataaacatcaacatattatctgctatatcagtattgccat |
7298185 |
T |
|
| Q |
148 |
tcactgctaacaaaaacctgctgcaaagtaaactta-aaacatattgcaggcc |
199 |
Q |
| |
|
|| ||||||||||||||||| | ||| |||||||| | ||||||||||||| |
|
|
| T |
7298186 |
tcgctgctaacaaaaacctgaggtaaactaaacttataggcatattgcaggcc |
7298238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University