View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21384_high_5 (Length: 236)
Name: NF21384_high_5
Description: NF21384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21384_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 2e-97; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 13 - 220
Target Start/End: Original strand, 30298504 - 30298706
Alignment:
| Q |
13 |
aagaatattttggaggctgccttcaatgtaagcataccaacacactatttatttattttgtatatacattatatggtttcaatcattatcaaaacatagt |
112 |
Q |
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| T |
30298504 |
aagaatattttggaggctgccttcaatgtaagcataccaacacagaatttatttattt-----atacattatatggtttcaatcattatcaaaacatagt |
30298598 |
T |
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| Q |
113 |
cattataatacttatccttgcatatattgttacaaatacaggccaattacgaggagatagagagggtgcttatagaagagcatgaacaagagccacaaca |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30298599 |
cattataatacttatccttgcatatattgttacaaatacaggccaattacgaggagatagagagggtgcttatagaagagcatgaacaagagccacaaca |
30298698 |
T |
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| Q |
213 |
caggagag |
220 |
Q |
| |
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|||||||| |
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| T |
30298699 |
caggagag |
30298706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 13 - 220
Target Start/End: Original strand, 30291033 - 30291255
Alignment:
| Q |
13 |
aagaatattttggaggctgccttcaatgtaagcataccaacacactatttatttattttgtatatacat-tatatggtttcaat-------------cat |
98 |
Q |
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| T |
30291033 |
aagaatattttggaggctgccttcaatgtaagcataccaacacactatttatttattttgtatatatatatatatagtataaattttcgaccattatcat |
30291132 |
T |
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| Q |
99 |
t-atcaaaacatagtcattataatacttatccttgcatatattgttacaaatacaggccaattacgaggagatagagagggtgcttatagaagagcatga |
197 |
Q |
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| |||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
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| T |
30291133 |
ttatcaaaacatagtcattataatacctgtccttgcatatattgttacaaatacagtccaattacgaggagatagagagggtgcttatagaagagcagga |
30291232 |
T |
|
| Q |
198 |
acaagagccacaacacaggagag |
220 |
Q |
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|||||||||| ||||||||||| |
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| T |
30291233 |
gcaagagccacgacacaggagag |
30291255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 13 - 203
Target Start/End: Original strand, 30303687 - 30303895
Alignment:
| Q |
13 |
aagaatattttggaggctgccttcaatgtaagcataccaacacactatttatttattt----tgtatatacattatatggt-------ttcaatcattat |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||| ||||| |||||| |
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| T |
30303687 |
aagaatattttggaggctgccttcaatgtaagcataccaacacactatttgtttatttcttttgtatatacagtatatggtataaattttcaaccattat |
30303786 |
T |
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| Q |
102 |
ca-------aaacatagtcattataatacttatccttgcatatattgttacaaatacaggccaattacgaggagatagagagggtgcttatagaagagca |
194 |
Q |
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|| |||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |
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| T |
30303787 |
catttatcaaaacgtagtcattataatacttgtccttgcatatattgttacaaatataggccaattatgaggagatagagagggtgcttatagaagagca |
30303886 |
T |
|
| Q |
195 |
tgaacaaga |
203 |
Q |
| |
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|| ||||| |
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| T |
30303887 |
ggagcaaga |
30303895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 13 - 220
Target Start/End: Original strand, 30314575 - 30314795
Alignment:
| Q |
13 |
aagaatattttggaggctgccttcaatgtaagcataccaacacactatttatttattttgtata-----tacattatatggt-------ttcaatcatta |
100 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||| ||| ||||| ||||| |
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| T |
30314575 |
aagaatattttggaggctgcctttaatgtaagcataccaacacactatttatttattttgtatactatatacagtataaggtataaattttcaaccatta |
30314674 |
T |
|
| Q |
101 |
t-------caaaacatagtcattataatacttatccttgcatatattgttacaaatacaggccaattacgaggagatagagagggtgcttatagaagagc |
193 |
Q |
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| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||| |||| ||||| |||||| |
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| T |
30314675 |
tcatttatcaaaacatagtcattataatacttgtccttgcatatattgttacaaatataggccaattatgaggagatagagcgggtccttattgaagag- |
30314773 |
T |
|
| Q |
194 |
atgaacaagagccacaacacaggagag |
220 |
Q |
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|||||||||||||||||||||| |
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| T |
30314774 |
-----caagagccacaacacaggagag |
30314795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 146 - 220
Target Start/End: Original strand, 30286167 - 30286241
Alignment:
| Q |
146 |
aaatacaggccaattacgaggagatagagagggtgcttatagaagagcatgaacaagagccacaacacaggagag |
220 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
30286167 |
aaatacagtccaattacgaggagatagagagggtgcttatagaagagaatgaacaagagccacaacacaggagag |
30286241 |
T |
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