View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21384_low_1 (Length: 604)

Name: NF21384_low_1
Description: NF21384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21384_low_1
NF21384_low_1
[»] chr6 (9 HSPs)
chr6 (18-192)||(32616991-32617165)
chr6 (25-188)||(14605813-14605975)
chr6 (37-190)||(18670049-18670206)
chr6 (124-192)||(17724480-17724548)
chr6 (18-93)||(23094414-23094489)
chr6 (39-93)||(17102466-17102520)
chr6 (209-249)||(18670227-18670267)
chr6 (37-93)||(22291564-22291620)
chr6 (119-174)||(14603831-14603886)
[»] chr5 (4 HSPs)
chr5 (72-192)||(24387413-24387533)
chr5 (37-190)||(32727498-32727656)
chr5 (72-192)||(24274682-24274800)
chr5 (209-249)||(32727677-32727717)
[»] scaffold0337 (2 HSPs)
scaffold0337 (18-190)||(582-758)
scaffold0337 (209-249)||(778-818)
[»] chr3 (7 HSPs)
chr3 (138-249)||(15212766-15212876)
chr3 (138-249)||(15251985-15252095)
chr3 (18-174)||(41935052-41935196)
chr3 (37-79)||(15212888-15212930)
chr3 (37-79)||(15252107-15252149)
chr3 (212-249)||(22155405-22155442)
chr3 (213-249)||(6079872-6079908)
[»] scaffold0003 (2 HSPs)
scaffold0003 (37-190)||(163221-163362)
scaffold0003 (37-93)||(171421-171477)
[»] chr8 (3 HSPs)
chr8 (140-192)||(45537247-45537299)
chr8 (24-82)||(22604931-22604989)
chr8 (138-191)||(22604998-22605051)
[»] chr1 (5 HSPs)
chr1 (18-174)||(25613807-25613951)
chr1 (37-93)||(2248214-2248270)
chr1 (115-174)||(19456110-19456169)
chr1 (18-74)||(19456025-19456081)
chr1 (119-190)||(2248129-2248200)
[»] chr7 (1 HSPs)
chr7 (35-184)||(48304956-48305102)
[»] scaffold0077 (3 HSPs)
scaffold0077 (37-93)||(40467-40523)
scaffold0077 (37-93)||(52399-52455)
scaffold0077 (166-249)||(52484-52567)
[»] scaffold0039 (1 HSPs)
scaffold0039 (37-74)||(102389-102426)
[»] chr4 (1 HSPs)
chr4 (118-185)||(22155945-22156012)
[»] scaffold0149 (1 HSPs)
scaffold0149 (37-74)||(20095-20132)


Alignment Details
Target: chr6 (Bit Score: 138; Significance: 8e-72; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 18 - 192
Target Start/End: Complemental strand, 32617165 - 32616991
Alignment:
Q  18 atatagttatgtggatataaaattatacaaagaagagtaaatatattgtatacatatgttatcgcaatacacaaacnnnnnnnggaggataaaagggcat 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||       |||||||||||||||||    
T  32617165 atatagttatgtggatataaaattatacaaagaagagtaaatatattgtatatatatgttatcgcaatacacaaacaaaaaaaggaggataaaagggcat 32617066  T
Q  118 caataaatctccattcattaggtttttagttcttatatttgtaaatgacaaactatatattaatttattttatac 192  Q
    |||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32617065 caataaatttctattcatcaggtttttagttcttatatttgtaaatgacaaactatatattaatttattttatac 32616991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 25 - 188
Target Start/End: Original strand, 14605813 - 14605975
Alignment:
Q  25 tatgtggatataaaattatacaaagaagagtaaatatattgtatacatatgttatcgcaatacacaaacnnnnnnnggaggataaaagggcatcaataaa 124  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||       | ||||||||||||||||||||||    
T  14605813 tatgtggatataaaattatacaacgaagagtaaatatatcgtatacatatgttattgcaatacacaaacaaaaaaag-aggataaaagggcatcaataaa 14605911  T
Q  125 tctccattcattaggtttttagttcttatatttgtaaatgacaaactatatattaatttatttt 188  Q
    | || |||||  || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  14605912 tttctattcaccagatttttagttcttatatttgtaaatgacaaactatatattaatttatttt 14605975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 37 - 190
Target Start/End: Original strand, 18670049 - 18670206
Alignment:
Q  37 aaattatacaaagaagagtaaatatattgtatacatatgttatcgcaatacacaaacnnnnnnnggaggataaaag-ggcatcaataaatctccattcat 135  Q
    |||||||||||||||| ||||||||||||||||||||| |||||| || | | || |       |||||||||||  |||| ||||||||||| ||||||    
T  18670049 aaattatacaaagaagggtaaatatattgtatacatattttatcgaaacaaataaccaaaaaagggaggataaaaaaggcaccaataaatctctattcat 18670148  T
Q  136 taggtttttagttctta----tatttgtaaatgacaaactatatattaatttattttat 190  Q
    |||||||||||||||||    |||| || ||||| ||||||| ||||||||||||||||    
T  18670149 taggtttttagttcttagaagtattcgtgaatgataaactat-tattaatttattttat 18670206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 124 - 192
Target Start/End: Original strand, 17724480 - 17724548
Alignment:
Q  124 atctccattcattaggtttttagttcttatatttgtaaatgacaaactatatattaatttattttatac 192  Q
    ||||| |||||| |||||||||| |||||||||| | ||||||||||||||||||||||||||||||||    
T  17724480 atctctattcatcaggtttttagatcttatatttttgaatgacaaactatatattaatttattttatac 17724548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 23094414 - 23094489
Alignment:
Q  18 atatagttatgtggatataaaattatacaaagaagagtaaatatattgtatacatatgttatcgcaatacacaaac 93  Q
    ||||| |||||| || || ||| |||||||||||| |||||||||||||||||||||  |||||||| || |||||    
T  23094414 atatatttatgttgaaattaaaatatacaaagaagggtaaatatattgtatacatattctatcgcaacacgcaaac 23094489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 93
Target Start/End: Original strand, 17102466 - 17102520
Alignment:
Q  39 attatacaaagaagagtaaatatattgtatacatatgttatcgcaatacacaaac 93  Q
    |||||||||||||| |||||||||||||||||||||  |||||||| || |||||    
T  17102466 attatacaaagaagggtaaatatattgtatacatattctatcgcaacacgcaaac 17102520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 18670227 - 18670267
Alignment:
Q  209 aagtatatatgctttagcgcagtagaaaaaacggacagacg 249  Q
    |||||||||||| ||||||||||||||||| ||||||||||    
T  18670227 aagtatatatgcgttagcgcagtagaaaaagcggacagacg 18670267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 93
Target Start/End: Original strand, 22291564 - 22291620
Alignment:
Q  37 aaattatacaaagaagagtaaatatattgtatacatatgttatcgcaatacacaaac 93  Q
    |||||||||||||| | |||||||||||||||||||||  |||| ||| ||||||||    
T  22291564 aaattatacaaagatgggtaaatatattgtatacatattctatcacaacacacaaac 22291620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 174
Target Start/End: Complemental strand, 14603886 - 14603831
Alignment:
Q  119 aataaatctccattcattaggtttttagttcttatatttgtaaatgacaaactata 174  Q
    |||||||||  | |||||||||||||||||||||||||||| |||  |||||||||    
T  14603886 aataaatctatactcattaggtttttagttcttatatttgtgaattgcaaactata 14603831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 2e-32; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 72 - 192
Target Start/End: Original strand, 24387413 - 24387533
Alignment:
Q  72 tatgttatcgcaatacacaaacnnnnnnnggaggataaaagggcatcaataaatctccattcattaggtttttagttcttatatttgtaaatgacaaact 171  Q
    |||||||||||||||| |||||       |||||||||||||||| |||||||||| ||||||| |||||||||||| |||||||||| ||||||||||     
T  24387413 tatgttatcgcaatacccaaacaataaagggaggataaaagggcaccaataaatcttcattcatcaggtttttagttattatatttgttaatgacaaaca 24387512  T
Q  172 atatattaatttattttatac 192  Q
    |||||||||||||||||||||    
T  24387513 atatattaatttattttatac 24387533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 37 - 190
Target Start/End: Original strand, 32727498 - 32727656
Alignment:
Q  37 aaattatacaaagaagagtaaatatattgtatacatatgttatcgcaatacacaaacnnnnnnnggaggataaaa-gggcatcaataaatctccattcat 135  Q
    |||||||||||||||| |||| |||||||||||||||| |||||| || | | || |       ||||||||||| ||||| ||||||||||| ||||||    
T  32727498 aaattatacaaagaagggtaactatattgtatacatattttatcgaaacaaataaccaaaaaagggaggataaaaagggcaccaataaatctctattcat 32727597  T
Q  136 taggtttttagttctta----tatttgtaaatgacaaactatatattaatttattttat 190  Q
    |||||||||||||||||    |||| || ||||||||||||||||||||||||||||||    
T  32727598 taggtttttagttcttagaagtattcgtgaatgacaaactatatattaatttattttat 32727656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 72 - 192
Target Start/End: Complemental strand, 24274800 - 24274682
Alignment:
Q  72 tatgttatcgcaatacacaaacnnnnnnnggaggataaaagggcatcaataaatctccattcattaggtttttagttcttatatttgtaaatgacaaact 171  Q
    |||||||||||||||| |||||       ||||||||||  |||| |||||||||| ||||||| |||||||||||| |||||||||| ||||||||||     
T  24274800 tatgttatcgcaatacccaaacaataaagggaggataaa--ggcaccaataaatcttcattcatcaggtttttagttattatatttgttaatgacaaaca 24274703  T
Q  172 atatattaatttattttatac 192  Q
    |||||||||||||||||||||    
T  24274702 atatattaatttattttatac 24274682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 32727677 - 32727717
Alignment:
Q  209 aagtatatatgctttagcgcagtagaaaaaacggacagacg 249  Q
    |||||||||| | ||||||||||||||||||| ||||||||    
T  32727677 aagtatatatacgttagcgcagtagaaaaaacagacagacg 32727717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 56; Significance: 7e-23; HSPs: 2)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 582 - 758
Alignment:
Q  18 atatagttatgtggatataaaattatacaaagaagagtaaatatattgtatacatatgttatcgcaatacacaaacnnnnnnnggaggataaaag-ggca 116  Q
    ||||| |||| |||| || |||||||||||||||| ||||||||||||||||||||| |||||| || | | || |       |||||||||||  ||||    
T  582 atatatttatttggaaattaaattatacaaagaag-gtaaatatattgtatacatattttatcgaaacaaataaccaaaaaagggaggataaaaatggca 680  T
Q  117 tcaataaatctccattcattaggtttttagttctta----tatttgtaaatgacaaactatatattaatttattttat 190  Q
     ||||||||||| |||||||||||||||  ||||||    |||| || ||||||||||||||||||||||||||||||    
T  681 ccaataaatctctattcattaggttttttcttcttagaagtattcgtgaatgacaaactatatattaatttattttat 758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 778 - 818
Alignment:
Q  209 aagtatatatgctttagcgcagtagaaaaaacggacagacg 249  Q
    |||||||||||| ||||||||||||||||| ||||||||||    
T  778 aagtatatatgcgttagcgcagtagaaaaagcggacagacg 818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 4e-21; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 138 - 249
Target Start/End: Complemental strand, 15212876 - 15212766
Alignment:
Q  138 ggtttttagttcttatatttgtaaatgacaaactatatattaatttattttatacnnnnnnnnncaaggtaaagtatatatgctttagcgcagtagaaaa 237  Q
    |||||||||||||||||||||| || ||||||||||||||||||||||||||||          |||||| ||| |||||||| ||||||||||||||||    
T  15212876 ggtttttagttcttatatttgtgaacgacaaactatatattaatttattttata-taaaaaaaacaaggtgaagaatatatgcgttagcgcagtagaaaa 15212778  T
Q  238 aacggacagacg 249  Q
    | ||||||||||    
T  15212777 agcggacagacg 15212766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 138 - 249
Target Start/End: Complemental strand, 15252095 - 15251985
Alignment:
Q  138 ggtttttagttcttatatttgtaaatgacaaactatatattaatttattttatacnnnnnnnnncaaggtaaagtatatatgctttagcgcagtagaaaa 237  Q
    |||||||||||||||||||||| || ||||||||||||||||||||||||||||          |||||| ||| |||||||| ||||||||||||||||    
T  15252095 ggtttttagttcttatatttgtgaacgacaaactatatattaatttattttata-taaaaaaaacaaggtgaagaatatatgcgttagcgcagtagaaaa 15251997  T
Q  238 aacggacagacg 249  Q
    | ||||||||||    
T  15251996 agcggacagacg 15251985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 41935052 - 41935196
Alignment:
Q  18 atatagttatgtggatataaaattatacaaagaagagtaaatatattgtatacatatgttatcgcaatacacaaacnnnnnnnggaggataaaagggcat 117  Q
    ||||| |||||| || || |||||||||||||||| |||||||||||||||||||||  |||||||| ||||||||            | |||||| ||     
T  41935052 atatatttatgttgaaattaaattatacaaagaagggtaaatatattgtatacatattctatcgcaacacacaaac------------aaaaaaggacac 41935139  T
Q  118 caataaatctccattcattaggtttttagttcttatatttgtaaatgacaaactata 174  Q
    ||||||||||  | |||| ||||||||||||||||||||||| |||  |||||||||    
T  41935140 caataaatctatactcatcaggtttttagttcttatatttgtgaattgcaaactata 41935196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 37 - 79
Target Start/End: Complemental strand, 15212930 - 15212888
Alignment:
Q  37 aaattatacaaagaagagtaaatatattgtatacatatgttat 79  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  15212930 aaattatacaaagaagagtaaatatattgtatacatatgttat 15212888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 37 - 79
Target Start/End: Complemental strand, 15252149 - 15252107
Alignment:
Q  37 aaattatacaaagaagagtaaatatattgtatacatatgttat 79  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  15252149 aaattatacaaagaagagtaaatatattgtatacatatgttat 15252107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 249
Target Start/End: Complemental strand, 22155442 - 22155405
Alignment:
Q  212 tatatatgctttagcgcagtagaaaaaacggacagacg 249  Q
    ||||||||| |||||| |||||||||||||||||||||    
T  22155442 tatatatgcgttagcgtagtagaaaaaacggacagacg 22155405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 213 - 249
Target Start/End: Original strand, 6079872 - 6079908
Alignment:
Q  213 atatatgctttagcgcagtagaaaaaacggacagacg 249  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  6079872 atatatgcgttagcgcagtagaaaaagcggacagacg 6079908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 37 - 190
Target Start/End: Complemental strand, 163362 - 163221
Alignment:
Q  37 aaattatacaaagaagagtaaatatattgtatacatatgttatcgcaatacacaaacnnnnnnnggaggataaaagggcatcaataaatctccattcatt 136  Q
    |||||||||||||||| |||||||||||||||||||||  |||| ||| ||||||||            | ||||||||| ||||||||||  | ||||     
T  163362 aaattatacaaagaagggtaaatatattgtatacatattctatcacaacacacaaac------------aaaaaagggcaccaataaatctatactcatc 163275  T
Q  137 aggtttttagttcttatatttgtaaatgacaaactatatattaatttattttat 190  Q
    || ||||||||||| |||||||  |||| |||||||||||||||||||||||||    
T  163274 agatttttagttctaatatttgagaatggcaaactatatattaatttattttat 163221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 171477 - 171421
Alignment:
Q  37 aaattatacaaagaagagtaaatatattgtatacatatgttatcgcaatacacaaac 93  Q
    |||||||||||||||| |||||||||||||||||||||  |||| ||| ||||||||    
T  171477 aaattatacaaagaagggtaaatatattgtatacatattctatcacaacacacaaac 171421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 45537247 - 45537299
Alignment:
Q  140 tttttagttcttatatttgtaaatgacaaactatatattaatttattttatac 192  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  45537247 tttttagttcttatatttgtgaatgacaaactatatattaatttattttatac 45537299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 22604931 - 22604989
Alignment:
Q  24 ttatgtggatataaaattatacaaagaagagtaaatatattgtatacatatgttatcgc 82  Q
    ||||||| | || |||||||||||| ||||||||||||| |||||||||||||||||||    
T  22604931 ttatgtgaaaattaaattatacaaataagagtaaatatagtgtatacatatgttatcgc 22604989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 138 - 191
Target Start/End: Original strand, 22604998 - 22605051
Alignment:
Q  138 ggtttttagttcttatatttgtaaatgacaaactatatattaatttattttata 191  Q
    |||||||||||||||||||||  ||  |||||||||||||||||||||||||||    
T  22604998 ggtttttagttcttatatttgcgaactacaaactatatattaatttattttata 22605051  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 25613807 - 25613951
Alignment:
Q  18 atatagttatgtggatataaaattatacaaagaagagtaaatatattgtatacatatgttatcgcaatacacaaacnnnnnnnggaggataaaagggcat 117  Q
    ||||| |||||| || || |||||||||||||||| ||||||||||||| |||||||  |||||||| || |||||            | |||||| ||     
T  25613807 atatatttatgttgaaattaaattatacaaagaagggtaaatatattgtgtacatattctatcgcaacacgcaaac------------aaaaaaggacac 25613894  T
Q  118 caataaatctccattcattaggtttttagttcttatatttgtaaatgacaaactata 174  Q
    ||||||||||  |||| | ||||||||||||||||||||||| |||| |||||||||    
T  25613895 caataaatctatattcgtcaggtttttagttcttatatttgtgaatggcaaactata 25613951  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 2248270 - 2248214
Alignment:
Q  37 aaattatacaaagaagagtaaatatattgtatacatatgttatcgcaatacacaaac 93  Q
    |||||||||||||||| |||||||||||||||||||||  |||| ||| ||||||||    
T  2248270 aaattatacaaagaagggtaaatatattgtatacatattctatcccaacacacaaac 2248214  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 115 - 174
Target Start/End: Original strand, 19456110 - 19456169
Alignment:
Q  115 catcaataaatctccattcattaggtttttagttcttatatttgtaaatgacaaactata 174  Q
    |||||||||||||  | |||||||| ||||||||||||||||||| |||| |||||||||    
T  19456110 catcaataaatctatactcattaggcttttagttcttatatttgtgaatggcaaactata 19456169  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 19456025 - 19456081
Alignment:
Q  18 atatagttatgtggatataaaattatacaaagaagagtaaatatattgtatacatat 74  Q
    ||||| |||||| || || ||||| |||||||||| |||||||||||||||||||||    
T  19456025 atatatttatgttgaaattaaattttacaaagaagggtaaatatattgtatacatat 19456081  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 190
Target Start/End: Complemental strand, 2248200 - 2248129
Alignment:
Q  119 aataaatctccattcattaggtttttagttcttatatttgtaaatgacaaactatatattaatttattttat 190  Q
    ||||||||| || || | ||||||||  |||| |||||||  || |||||||||||||||||||||||||||    
T  2248200 aataaatctacactcttcaggtttttgattctaatatttgagaaagacaaactatatattaatttattttat 2248129  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 35 - 184
Target Start/End: Complemental strand, 48305102 - 48304956
Alignment:
Q  35 taaaattatacaaagaagagtaaatatattgtatacatatgttatcgcaatacacaaacnnnnnnng--gaggataaaagggcatcaataaatctccatt 132  Q
    |||||||||||||| | || ||||||||||||||||||||||||||  |||| ||||||       |  ||||||    |||||  ||| |||||||  |    
T  48305102 taaaattatacaaaaaggaataaatatattgtatacatatgttatcataata-acaaacagaaaaagaggaggat----gggcaaaaatgaatctccgat 48305008  T
Q  133 cattaggtttttagttcttatatttgtaaatgacaaactatatattaattta 184  Q
    ||| || ||| |||||||||||||||| ||||||||||||||||||||||||    
T  48305007 catcagatttgtagttcttatatttgtgaatgacaaactatatattaattta 48304956  T

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Target: scaffold0077 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 40523 - 40467
Alignment:
Q  37 aaattatacaaagaagagtaaatatattgtatacatatgttatcgcaatacacaaac 93  Q
    |||||||||||||||| |||||||||||||||||||||  |||| ||| ||||||||    
T  40523 aaattatacaaagaagggtaaatatattgtatacatattctatcacaacacacaaac 40467  T

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Target: scaffold0077; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 93
Target Start/End: Original strand, 52399 - 52455
Alignment:
Q  37 aaattatacaaagaagagtaaatatattgtatacatatgttatcgcaatacacaaac 93  Q
    |||||||||||||||| |||||||||||||||||||||  |||| ||| ||||||||    
T  52399 aaattatacaaagaagggtaaatatattgtatacatattctatcacaacacacaaac 52455  T

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Target: scaffold0077; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 166 - 249
Target Start/End: Original strand, 52484 - 52567
Alignment:
Q  166 caaactatatattaatttattttatacnnnnnnnnncaaggtaaagtatatatgctttagcgcagtagaaaaaacggacagacg 249  Q
    ||||||||||||||||||||||||| |          ||||||||||||| |||| ||||||||||||||| | ||||||||||    
T  52484 caaactatatattaatttattttatgcaaaaaaaaagaaggtaaagtatacatgcgttagcgcagtagaaagagcggacagacg 52567  T

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Target: scaffold0039 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 37 - 74
Target Start/End: Complemental strand, 102426 - 102389
Alignment:
Q  37 aaattatacaaagaagagtaaatatattgtatacatat 74  Q
    |||||||||||||||| |||||||||||||||||||||    
T  102426 aaattatacaaagaagggtaaatatattgtatacatat 102389  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 185
Target Start/End: Original strand, 22155945 - 22156012
Alignment:
Q  118 caataaatctccattcattaggtttttagttcttatatttgtaaatgacaaactatatattaatttat 185  Q
    ||||| ||||| |||||| |  |||||||||||||||||| || |||||| | |||||||||||||||    
T  22155945 caatatatctctattcatcaaatttttagttcttatatttatatatgacatattatatattaatttat 22156012  T

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Target: scaffold0149 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 74
Target Start/End: Original strand, 20095 - 20132
Alignment:
Q  37 aaattatacaaagaagagtaaatatattgtatacatat 74  Q
    |||||||| ||||||| |||||||||||||||||||||    
T  20095 aaattatataaagaagggtaaatatattgtatacatat 20132  T

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