View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21384_low_4 (Length: 421)

Name: NF21384_low_4
Description: NF21384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21384_low_4
NF21384_low_4
[»] chr5 (12 HSPs)
chr5 (1-420)||(30047870-30048287)
chr5 (7-276)||(16598065-16598337)
chr5 (63-229)||(12019533-12019699)
chr5 (63-229)||(37659471-37659637)
chr5 (322-404)||(16598337-16598420)
chr5 (63-229)||(7103121-7103287)
chr5 (63-229)||(16794913-16795079)
chr5 (63-226)||(30696043-30696206)
chr5 (63-226)||(40370994-40371157)
chr5 (281-375)||(40371213-40371307)
chr5 (80-229)||(10275281-10275430)
chr5 (281-357)||(12019404-12019480)
[»] chr3 (5 HSPs)
chr3 (68-226)||(22931059-22931217)
chr3 (63-229)||(54171091-54171257)
chr3 (6-229)||(21847872-21848095)
chr3 (60-229)||(9698325-9698494)
chr3 (80-229)||(43548459-43548608)
[»] chr4 (5 HSPs)
chr4 (96-375)||(20290099-20290379)
chr4 (80-229)||(44147802-44147951)
chr4 (150-229)||(31355423-31355502)
chr4 (60-229)||(27186883-27187052)
chr4 (9-49)||(20290426-20290466)
[»] chr8 (6 HSPs)
chr8 (90-342)||(44912963-44913216)
chr8 (12-306)||(10683285-10683580)
chr8 (63-229)||(43811230-43811396)
chr8 (63-229)||(201431-201597)
chr8 (63-229)||(316268-316434)
chr8 (63-229)||(30409550-30409716)
[»] chr7 (3 HSPs)
chr7 (63-229)||(27757641-27757807)
chr7 (63-229)||(7943830-7943996)
chr7 (141-228)||(730353-730440)
[»] scaffold0044 (2 HSPs)
scaffold0044 (63-229)||(48612-48778)
scaffold0044 (281-357)||(48831-48907)
[»] chr6 (1 HSPs)
chr6 (63-229)||(8319251-8319417)
[»] chr2 (2 HSPs)
chr2 (63-229)||(8051636-8051802)
chr2 (63-229)||(36671295-36671461)
[»] chr1 (2 HSPs)
chr1 (63-229)||(39794639-39794805)
chr1 (63-229)||(26312257-26312423)


Alignment Details
Target: chr5 (Bit Score: 351; Significance: 0; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 420
Target Start/End: Complemental strand, 30048287 - 30047870
Alignment:
Q  1 ttacggccaccactataaaataaaatcttggagatagtattcttatgatcgtgtcaataatatgttaatcagagattgtttcactgcatgccttcatctg 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||    
T  30048287 ttacggccaccactataaaataaaatcttggagatagtgttcttatgatcgtctcaataatttgttaatcagagattgtttcactgcatgccttcatttg 30048188  T
Q  101 atttacaacattaatcaacttaaagaggtaatcaagaatcttttgctcctcttccatttgcatcaacttaaatttccttcttaaagactgaagttttatc 200  Q
       ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  30048187 ---tacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgcatcaacttaaatttccttcttaaagaccgaagctttatc 30048091  T
Q  201 tccttcaccttctcatctccttcatgatatttctctagaatatccaaacttcctttgatcttgtagccgtagaaattttatcaaaatttcctccatcaac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30048090 tccttcaccttctcatctccttcatgatatttctctagaatatccaaacttcctttgatcttgtagccgtagaaattttatcaaaatttcctccatcaac 30047991  T
Q  301 gccttgttgaatgaagaacactgctttgcaatccttcttctttaactccttatgtgcaattctttgtacttcag-tatattcctacccaattcatcagaa 399  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||| ||||||||||||| ||    
T  30047990 accttgttgaatgaagaacactgctttgcaatccttcttctttaactccttatgtgcaattctttgtacttcagttgcattccaacccaattcatcaaaa 30047891  T
Q  400 ccattttgcacaatcttcatc 420  Q
    |||||||||||||||||||||    
T  30047890 ccattttgcacaatcttcatc 30047870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 7 - 276
Target Start/End: Original strand, 16598065 - 16598337
Alignment:
Q  7 ccaccactataaaataaaatcttggagatagtattcttatgatcgtgtcaataatatgttaatcagagattgtttcactgcatgccttcatctgatttac 106  Q
    |||| ||||| |||| ||| ||| |||||||  |||| |||||| | |||| ||| |||  ||| || || |||||||| |||||||||||| ||||| |    
T  16598065 ccactactatgaaatcaaaccttagagatagagttctcatgatcttctcaacaatttgtggatctgaaatagtttcactccatgccttcatccgattttc 16598164  T
Q  107 aacattaatcaacttaaagaggtaatcaagaatcttttgctcctcttccatttgcatcaacttaaatttccttcttaaagactgaagttttatctccttc 206  Q
    ||||||||||| |||| ||| |||||||| |||||| ||||| ||||||||||||| | | | ||||||||||| |||||| ||||| ||||||| ||||    
T  16598165 aacattaatcatcttagagatgtaatcaacaatcttctgctcatcttccatttgcaactattcaaatttccttcataaagagtgaagctttatctacttc 16598264  T
Q  207 accttctcatctccttcatg--atatttctctagaatat-ccaaacttcctttgatcttgtagccgtagaaat 276  Q
    ||||| |||||||||||| |  |||||| || || |||| |||| ||||| ||||| |||||||| |||||||    
T  16598265 accttttcatctccttcacgatatatttgtcaagtatatcccaagcttccattgattttgtagccttagaaat 16598337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 63 - 229
Target Start/End: Complemental strand, 12019699 - 12019533
Alignment:
Q  63 tgttaatcagagattgtttcactgcatgccttcatctgatttacaacattaatcaacttaaagaggtaatcaagaatcttttgctcctcttccatttgca 162  Q
    |||| ||||| ||||| |||||| || |||||||||||||| |||| |||||| |  ||| ||| ||| |||  |||||| || || |||||||||||||    
T  12019699 tgttgatcagtgattgcttcactacaagccttcatctgattcacaagattaatgagtttagagatgtattcagaaatcttctgatcatcttccatttgca 12019600  T
Q  163 tcaacttaaatttccttcttaaagactgaagttttatctccttcaccttctcatctccttcatgata 229  Q
    |||| | |||||||||||| | ||| ||||| || |||  |||||| || ||||| |||||||||||    
T  12019599 tcaattcaaatttccttctcagagattgaagcttaatcaacttcactttatcatcaccttcatgata 12019533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 63 - 229
Target Start/End: Complemental strand, 37659637 - 37659471
Alignment:
Q  63 tgttaatcagagattgtttcactgcatgccttcatctgatttacaacattaatcaacttaaagaggtaatcaagaatcttttgctcctcttccatttgca 162  Q
    |||| ||||| ||||| |||||| || |||||||||||||| |||| |||||| |  ||| ||| ||| |||  |||||| || || |||||||||||||    
T  37659637 tgttgatcagtgattgcttcactacaagccttcatctgattcacaagattaatgagtttagagatgtattcagaaatcttctgatcatcttccatttgca 37659538  T
Q  163 tcaacttaaatttccttcttaaagactgaagttttatctccttcaccttctcatctccttcatgata 229  Q
    |||| | |||||||||||| | ||| ||||| || |||  |||||| || ||||| |||||||||||    
T  37659537 tcaattcaaatttccttctcagagattgaagcttaatcaacttcactttatcatcaccttcatgata 37659471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 322 - 404
Target Start/End: Original strand, 16598337 - 16598420
Alignment:
Q  322 tgctttgcaatccttcttctttaactccttatgtgcaattctttgtacttcag-tatattcctacccaattcatcagaaccatt 404  Q
    ||||||||||||||||||||||||||||||||| ||| |||| ||||||| || |  ||| | ||||||||||||| |||||||    
T  16598337 tgctttgcaatccttcttctttaactccttatgcgcagttctctgtactttagttgcatttccacccaattcatcataaccatt 16598420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 63 - 229
Target Start/End: Original strand, 7103121 - 7103287
Alignment:
Q  63 tgttaatcagagattgtttcactgcatgccttcatctgatttacaacattaatcaacttaaagaggtaatcaagaatcttttgctcctcttccatttgca 162  Q
    |||| ||||| ||| | |||||| || |||||||||||||| |||| ||| || |  ||| ||| ||| |||  |||||| || || |||||||||||||    
T  7103121 tgttgatcagtgatagcttcactacaagccttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgca 7103220  T
Q  163 tcaacttaaatttccttcttaaagactgaagttttatctccttcaccttctcatctccttcatgata 229  Q
    ||| || |||||||||||| | ||| ||||| || |||  |||||| || ||||| |||||||||||    
T  7103221 tcagctcaaatttccttctcagagattgaagcttaatcaacttcactttatcatcaccttcatgata 7103287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 63 - 229
Target Start/End: Complemental strand, 16795079 - 16794913
Alignment:
Q  63 tgttaatcagagattgtttcactgcatgccttcatctgatttacaacattaatcaacttaaagaggtaatcaagaatcttttgctcctcttccatttgca 162  Q
    |||| ||||| ||| | |||||| || |||||||||||||| |||| ||| || |  ||| ||| ||| |||  |||||| || || |||||||||||||    
T  16795079 tgttgatcagtgatagcttcactacaagccttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgca 16794980  T
Q  163 tcaacttaaatttccttcttaaagactgaagttttatctccttcaccttctcatctccttcatgata 229  Q
    ||| || |||||||||||| | ||| ||||| || |||  |||||| || ||||| |||||||||||    
T  16794979 tcagctcaaatttccttctcagagattgaagcttaatcaacttcactttatcatcaccttcatgata 16794913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 63 - 226
Target Start/End: Complemental strand, 30696206 - 30696043
Alignment:
Q  63 tgttaatcagagattgtttcactgcatgccttcatctgatttacaacattaatcaacttaaagaggtaatcaagaatcttttgctcctcttccatttgca 162  Q
    |||| ||||| ||||| |||||| || |||||||||||||| |||| ||| || |  ||| ||| ||| |||  |||||| || || |||||||||||||    
T  30696206 tgttgatcagtgattgcttcactacaagccttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgca 30696107  T
Q  163 tcaacttaaatttccttcttaaagactgaagttttatctccttcaccttctcatctccttcatg 226  Q
    ||| || |||||||||||| |  || ||||| || |||  |||||| || ||||| ||||||||    
T  30696106 tcagctcaaatttccttctcagtgattgaagcttaatcaacttcactttatcatcaccttcatg 30696043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 63 - 226
Target Start/End: Original strand, 40370994 - 40371157
Alignment:
Q  63 tgttaatcagagattgtttcactgcatgccttcatctgatttacaacattaatcaacttaaagaggtaatcaagaatcttttgctcctcttccatttgca 162  Q
    |||| ||||| ||||| |||||| || |||||||||||||| |||| ||| || |  ||| ||| ||| |||  |||||| || || |||||||||||||    
T  40370994 tgttgatcagtgattgcttcactacaagccttcatctgattcacaagattgatgagtttagagatgtattcagaaatcttctgatcatcttccatttgca 40371093  T
Q  163 tcaacttaaatttccttcttaaagactgaagttttatctccttcaccttctcatctccttcatg 226  Q
    |||  | |||||||||||| |  |||||||| || |||   ||||| || ||||| ||||||||    
T  40371094 tcagttcaaatttccttctcagtgactgaagcttaatcaatttcactttatcatcaccttcatg 40371157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 375
Target Start/End: Original strand, 40371213 - 40371307
Alignment:
Q  281 tcaaaatttcctccatcaacgccttgttgaatgaagaacactgctttgcaatccttcttctttaactccttatgtgcaattctttgtacttcagt 375  Q
    ||||| |||||| ||||||  | ||||||||| |||||||  || |||||||| |||||||| || ||||| |||||  | ||||||||||||||    
T  40371213 tcaaagtttccttcatcaagactttgttgaatcaagaacagagccttgcaatctttcttcttcaattccttgtgtgcgttcctttgtacttcagt 40371307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 229
Target Start/End: Complemental strand, 10275430 - 10275281
Alignment:
Q  80 ttcactgcatgccttcatctgatttacaacattaatcaacttaaagaggtaatcaagaatcttttgctcctcttccatttgcatcaacttaaatttcctt 179  Q
    |||||| || |||||||||||||  |||| ||| || |  ||| ||| ||| |||  |||||| || || |||||||| ||||||| || ||||||||||    
T  10275430 ttcactacaagccttcatctgatacacaagattgatgagtttagagatgtattcagaaatcttctgatcatcttccatctgcatcagctcaaatttcctt 10275331  T
Q  180 cttaaagactgaagttttatctccttcaccttctcatctccttcatgata 229  Q
    ||||  || ||||| || |||  |||||| || ||||| |||||||||||    
T  10275330 cttagtgattgaagcttaatcaacttcactttatcatcaccttcatgata 10275281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 357
Target Start/End: Complemental strand, 12019480 - 12019404
Alignment:
Q  281 tcaaaatttcctccatcaacgccttgttgaatgaagaacactgctttgcaatccttcttctttaactccttatgtgc 357  Q
    ||||| |||||| ||||||  | ||||||||| |||||||  || |||||||| |||||||| || |||||||||||    
T  12019480 tcaaagtttccttcatcaagactttgttgaatcaagaacagagccttgcaatctttcttcttcaattccttatgtgc 12019404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 8e-37; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 68 - 226
Target Start/End: Original strand, 22931059 - 22931217
Alignment:
Q  68 atcagagattgtttcactgcatgccttcatctgatttacaacattaatcaacttaaagaggtaatcaagaatcttttgctcctcttccatttgcatcaac 167  Q
    |||||| |||||| |||| ||  ||||||||||||||||||||||||||| | |  ||| |||||||| |||||||| ||| ||||||||||||||||||    
T  22931059 atcagaaattgttccactacaaaccttcatctgatttacaacattaatcagcatggagatgtaatcaacaatctttttctcatcttccatttgcatcaac 22931158  T
Q  168 ttaaatttccttcttaaagactgaagttttatctccttcaccttctcatctccttcatg 226  Q
    | |||||||||||||||  ||||||| ||||||| |||||||||  |||||||||||||    
T  22931159 tcaaatttccttcttaataactgaagctttatctgcttcaccttagcatctccttcatg 22931217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 63 - 229
Target Start/End: Original strand, 54171091 - 54171257
Alignment:
Q  63 tgttaatcagagattgtttcactgcatgccttcatctgatttacaacattaatcaacttaaagaggtaatcaagaatcttttgctcctcttccatttgca 162  Q
    |||| ||||| ||| | |||||| || |||||||||||||| |||| ||| || |  ||| ||| ||| |||  ||||||||| || |||||||||||||    
T  54171091 tgttgatcagtgatagcttcactacaagccttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttttgatcatcttccatttgca 54171190  T
Q  163 tcaacttaaatttccttcttaaagactgaagttttatctccttcaccttctcatctccttcatgata 229  Q
    ||| || |||||||||||| | ||| ||||| || |||  |||||| || ||||| |||||||||||    
T  54171191 tcagctcaaatttccttctcagagattgaagcttaatcaacttcactttatcatcaccttcatgata 54171257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 6 - 229
Target Start/End: Complemental strand, 21848095 - 21847872
Alignment:
Q  6 gccaccactataaaataaaatcttggagatagtattcttatgatcgtgtcaataatatgttaatcagagattgtttcactgcatgccttcatctgattta 105  Q
    |||||||| || |||| ||| |||| |||||| || || || ||| | ||||  || |||| ||||| ||| | |||||| || |||||||||||||| |    
T  21848095 gccaccacaatgaaatcaaaccttgaagataggatcctcataatcttttcaactatctgttgatcagtgatagcttcactacaagccttcatctgattca 21847996  T
Q  106 caacattaatcaacttaaagaggtaatcaagaatcttttgctcctcttccatttgcatcaacttaaatttccttcttaaagactgaagttttatctcctt 205  Q
    ||| ||| || |  ||| ||| ||| | |  |||||| || || |||||||||||||||| || |||||||||||| | ||| ||||| || |||  |||    
T  21847995 caagattgatgagtttagagatgtacttagaaatcttctgatcatcttccatttgcatcagctcaaatttccttctcagagattgaagcttaatcaactt 21847896  T
Q  206 caccttctcatctccttcatgata 229  Q
    ||| || ||||| |||||||||||    
T  21847895 cactttatcatcaccttcatgata 21847872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 229
Target Start/End: Complemental strand, 9698494 - 9698325
Alignment:
Q  60 atatgttaatcagagattgtttcactgcatgccttcatctgatttacaacattaatcaacttaaagaggtaatcaagaatcttttgctcctcttccattt 159  Q
    ||||||| ||||| ||| | |||||| || |||||||||||||| |||| ||| || |  ||| ||| ||| |||  |||||| || || ||||||||||    
T  9698494 atatgttgatcagtgatagcttcactacaagccttcatctgattcacaagattgatgagtttagagatgtattcagaaatcttctgatcatcttccattt 9698395  T
Q  160 gcatcaacttaaatttccttcttaaagactgaagttttatctccttcaccttctcatctccttcatgata 229  Q
    ||| || || |||||||||||| |  || ||||| || |||  |||||| || ||| | |||||||||||    
T  9698394 gcaccagctcaaatttccttctcagtgattgaagcttaatcaacttcactttatcaccaccttcatgata 9698325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 229
Target Start/End: Complemental strand, 43548608 - 43548459
Alignment:
Q  80 ttcactgcatgccttcatctgatttacaacattaatcaacttaaagaggtaatcaagaatcttttgctcctcttccatttgcatcaacttaaatttcctt 179  Q
    |||||| || |||||||||||||| |||| ||| || |  ||| | | ||| |||  ||||||||| || |||||||| ||||||| || ||||||||||    
T  43548608 ttcactacaagccttcatctgattcacaagattgatgagtttagatatgtattcagaaatcttttgatcatcttccatctgcatcagctcaaatttcctt 43548509  T
Q  180 cttaaagactgaagttttatctccttcaccttctcatctccttcatgata 229  Q
    ||||  || ||||| || |||   ||||| || ||||| |||||||||||    
T  43548508 cttagtgattgaagcttaatcaatttcactttatcatcaccttcatgata 43548459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 96 - 375
Target Start/End: Complemental strand, 20290379 - 20290099
Alignment:
Q  96 atctgatttacaacattaatcaacttaaagaggtaatcaagaatcttttgctcctcttccatttgcatcaacttaaatttccttcttaaagactgaagtt 195  Q
    ||||||||||||||||| || |  ||  ||| |||||||  |||||| | ||| || |||||||||||||| ||||| |||||||| || |||||||| |    
T  20290379 atctgatttacaacattgattagtttggagatgtaatcagcaatcttcttctcatcctccatttgcatcaatttaaacttccttctcaatgactgaagct 20290280  T
Q  196 ttatctccttcaccttctcatctccttcatgatatttctctagaata-tccaaacttcctttgatcttgtagccgtagaaattttatcaaaatttcctcc 294  Q
    |||||| || |||||| ||||| |||||||||||||| || |||||| |  || |||||||||||||||| |   |||||||| | | ||| |||||| |    
T  20290279 ttatctgctccaccttatcatcaccttcatgatatttttccagaatatttgaagcttcctttgatcttgtggatttagaaattcttttaaagtttccttc 20290180  T
Q  295 atcaacgccttgttgaatgaagaacactgctttgcaatccttcttctttaactccttatgtgcaattctttgtacttcagt 375  Q
    |||||  |  | |||||||| ||||| | | ||||||||||||||||||||||| ||||||||| | || || ||||||||    
T  20290179 atcaagactctattgaatgaggaacaattccttgcaatccttcttctttaactctttatgtgcattcctatgcacttcagt 20290099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 229
Target Start/End: Complemental strand, 44147951 - 44147802
Alignment:
Q  80 ttcactgcatgccttcatctgatttacaacattaatcaacttaaagaggtaatcaagaatcttttgctcctcttccatttgcatcaacttaaatttcctt 179  Q
    |||||| || |||||||||||||| |||| ||| || |  ||| ||| ||| |||  |||||| || || |||||||||||||||| || ||||||||||    
T  44147951 ttcactacaagccttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgcatcagctcaaatttcctt 44147852  T
Q  180 cttaaagactgaagttttatctccttcaccttctcatctccttcatgata 229  Q
    || | ||| ||||| || |||  |||||| || ||||| |||||||||||    
T  44147851 ctcagagattgaagcttaatcaacttcactttatcatcaccttcatgata 44147802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 150 - 229
Target Start/End: Complemental strand, 31355502 - 31355423
Alignment:
Q  150 tcttccatttgcatcaacttaaatttccttcttaaagactgaagttttatctccttcaccttctcatctccttcatgata 229  Q
    |||||||| ||||||| || |||||||||||| |  ||||||||||| |||  |||||| || ||||| |||||||||||    
T  31355502 tcttccatctgcatcagctcaaatttccttctcagtgactgaagtttaatcatcttcactttatcatcaccttcatgata 31355423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 229
Target Start/End: Complemental strand, 27187052 - 27186883
Alignment:
Q  60 atatgttaatcagagattgtttcactgcatgccttcatctgatttacaacattaatcaacttaaagaggtaatcaagaatcttttgctcctcttccattt 159  Q
    ||||||| ||||| ||| | |||||| || |||||||||||||| |||| ||| || |  ||| ||| ||| |||  |||||| || || ||||||||||    
T  27187052 atatgttgatcagtgatagcttcactacaagccttcatctgattcacaagattgatgagtttagagatgtattcagaaatcttctgatcatcttccattt 27186953  T
Q  160 gcatcaacttaaatttccttcttaaagactgaagttttatctccttcaccttctcatctccttcatgata 229  Q
    ||| || || |||||||||||| |  || ||||| || |||  |||||| || ||| | |||||||||||    
T  27186952 gcaccagctcaaatttccttctcagtgattgaagcttaatcaacttcactttatcaccaccttcatgata 27186883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 20290466 - 20290426
Alignment:
Q  9 accactataaaataaaatcttggagatagtattcttatgat 49  Q
    ||||||||||||| |||||||||||||||| |||| |||||    
T  20290466 accactataaaatcaaatcttggagatagtgttctcatgat 20290426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 90 - 342
Target Start/End: Original strand, 44912963 - 44913216
Alignment:
Q  90 gccttcatctgatttacaacattaatcaacttaaagaggtaatcaagaatcttttgctcctcttccatttgcatcaacttaaatttccttcttaaagact 189  Q
    |||||||||||||||||||||||| |||  ||  ||| |||||||| |||||||||||| ||||||||||||||||  | ||| || |||||||||||||    
T  44912963 gccttcatctgatttacaacattattcagtttggagatgtaatcaacaatcttttgctcatcttccatttgcatcatttcaaactttcttcttaaagact 44913062  T
Q  190 gaagttttatctccttcaccttctcatctccttcatgatatttctctagaatatccaaa-cttcctttgatcttgtagccgtagaaattttatcaaaatt 288  Q
    |||| |||||||| ||||||||  |||| ||||||| | || | || |||||||||||| | ||||| ||  |||| |   | || ||| | ||||||||    
T  44913063 gaagctttatctctttcaccttagcatcaccttcataacatctttcaagaatatccaaagcctccttagactttgtggattttgagattctttcaaaatt 44913162  T
Q  289 tcctccatcaacgccttgttgaatgaagaacactgctttgcaatccttcttctt 342  Q
    ||||  ||| || | ||||||||||||||| | ||| ||||| |||||||||||    
T  44913163 tcctgaatctacactttgttgaatgaagaaaagtgccttgcagtccttcttctt 44913216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 12 - 306
Target Start/End: Original strand, 10683285 - 10683580
Alignment:
Q  12 actataaaataaaatcttggagatagtattcttatgatcgtgtcaataatatgttaatcagagattgtttcactgcatgccttcatctgatttacaacat 111  Q
    ||||| |||| ||||||||| |||||  |||  |||||| | | || |||||||||||| || ||||||| |||||||| |||||||||||| | || ||    
T  10683285 actatgaaatcaaatcttggggatagagttcacatgatcttctaaacaatatgttaatctgaaattgtttaactgcatgtcttcatctgattgaaaatat 10683384  T
Q  112 taatcaacttaaagaggtaatcaagaatcttttgctcctcttccatttgcatcaacttaaatttccttcttaaagactgaagttttatctccttcacctt 211  Q
    ||||||  ||  | | |||||||| ||| ||||  || |||||||| |||||||  |||||||||||||||| ||||||||| || |||| |||||||||    
T  10683385 taatcagtttggatatgtaatcaacaatttttttatcatcttccatctgcatcagtttaaatttccttcttagagactgaagcttgatctgcttcacctt 10683484  T
Q  212 ctcatctccttcatgatatttctctagaatat-ccaaacttcctttgatcttgtagccgtagaaattttatcaaaatttcctccatcaacgccttg 306  Q
     ||||| |||||| |||| |  ||||| |||| |||  ||||||||| | ||||| || | || ||||| ||||| |||| ||||| ||| |||||    
T  10683485 ttcatcaccttcacgatactcttctagtatatcccatgcttcctttgtttttgtaacctttgatattttctcaaagtttcttccattaacaccttg 10683580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 63 - 229
Target Start/End: Original strand, 43811230 - 43811396
Alignment:
Q  63 tgttaatcagagattgtttcactgcatgccttcatctgatttacaacattaatcaacttaaagaggtaatcaagaatcttttgctcctcttccatttgca 162  Q
    |||| ||||| ||||| |||||| || |||||||||||||| |||| |||||| |  ||| ||| ||| |||  |||||| || || |||||||||||||    
T  43811230 tgttgatcagtgattgcttcactacaagccttcatctgattcacaagattaatgagtttagagatgtattcagaaatcttctgatcatcttccatttgca 43811329  T
Q  163 tcaacttaaatttccttcttaaagactgaagttttatctccttcaccttctcatctccttcatgata 229  Q
    |||| | |||||||||||| | ||| ||||| || |||  |||||| || ||||| |||||||||||    
T  43811330 tcaattcaaatttccttctcagagattgaagcttaatcaacttcactttatcatcaccttcatgata 43811396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 63 - 229
Target Start/End: Original strand, 201431 - 201597
Alignment:
Q  63 tgttaatcagagattgtttcactgcatgccttcatctgatttacaacattaatcaacttaaagaggtaatcaagaatcttttgctcctcttccatttgca 162  Q
    |||| ||||| ||| | |||||| || |||||||||||||| |||| ||| || |  ||| ||| ||| |||  |||||| || || |||||||||||||    
T  201431 tgttgatcagtgatagcttcactacaagccttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgca 201530  T
Q  163 tcaacttaaatttccttcttaaagactgaagttttatctccttcaccttctcatctccttcatgata 229  Q
    ||| || |||||||||||| | ||| ||||| || |||  |||||| || ||||| |||||||||||    
T  201531 tcagctcaaatttccttctcagagattgaagcttaatcaacttcactttatcatcaccttcatgata 201597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 63 - 229
Target Start/End: Original strand, 316268 - 316434
Alignment:
Q  63 tgttaatcagagattgtttcactgcatgccttcatctgatttacaacattaatcaacttaaagaggtaatcaagaatcttttgctcctcttccatttgca 162  Q
    |||| ||||| ||| | |||||| || |||||||||||||| |||| ||| || |  ||| ||| ||| |||  |||||| || || |||||||||||||    
T  316268 tgttgatcagtgatagcttcactacaagccttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgca 316367  T
Q  163 tcaacttaaatttccttcttaaagactgaagttttatctccttcaccttctcatctccttcatgata 229  Q
    ||| || |||||||||||| | ||| ||||| || |||  |||||| || ||||| |||||||||||    
T  316368 tcagctcaaatttccttctcagagattgaagcttaatcaacttcactttatcatcaccttcatgata 316434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 63 - 229
Target Start/End: Original strand, 30409550 - 30409716
Alignment:
Q  63 tgttaatcagagattgtttcactgcatgccttcatctgatttacaacattaatcaacttaaagaggtaatcaagaatcttttgctcctcttccatttgca 162  Q
    |||| ||||| ||| | |||||| || |||||||||||||| |||| ||| || |  ||| ||| ||| |||  |||||| || || |||||||||||||    
T  30409550 tgttgatcagtgatagcttcactacaagccttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgca 30409649  T
Q  163 tcaacttaaatttccttcttaaagactgaagttttatctccttcaccttctcatctccttcatgata 229  Q
    ||| || |||||||||||| | ||| ||||| || |||  |||||| || ||||| |||||||||||    
T  30409650 tcagctcaaatttccttctcagagattgaagcttaatcaacttcactttatcatcaccttcatgata 30409716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 63 - 229
Target Start/End: Complemental strand, 27757807 - 27757641
Alignment:
Q  63 tgttaatcagagattgtttcactgcatgccttcatctgatttacaacattaatcaacttaaagaggtaatcaagaatcttttgctcctcttccatttgca 162  Q
    |||| ||||| ||| | |||||| || |||||||||||||| |||| ||| || |  ||| ||| ||| |||  |||||| || || |||||||||||||    
T  27757807 tgttgatcagtgatagcttcactacacgccttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgca 27757708  T
Q  163 tcaacttaaatttccttcttaaagactgaagttttatctccttcaccttctcatctccttcatgata 229  Q
    ||| || |||||||||||| | ||| |||||||| |||  |||||| || ||||| |||||||||||    
T  27757707 tcagctcaaatttccttctcagagattgaagtttaatcaacttcactttatcatcaccttcatgata 27757641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 63 - 229
Target Start/End: Original strand, 7943830 - 7943996
Alignment:
Q  63 tgttaatcagagattgtttcactgcatgccttcatctgatttacaacattaatcaacttaaagaggtaatcaagaatcttttgctcctcttccatttgca 162  Q
    |||| ||||| ||| | |||||| || |||||||||||||| |||| ||| || |  ||| ||| ||| |||  |||||| || || |||||||||||||    
T  7943830 tgttgatcagtgatagcttcactacaagccttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgca 7943929  T
Q  163 tcaacttaaatttccttcttaaagactgaagttttatctccttcaccttctcatctccttcatgata 229  Q
    ||| || |||||||||||| | ||| ||||| || |||  |||||| || ||||| |||||||||||    
T  7943930 tcagctcaaatttccttctcagagattgaagcttaatcaacttcactttatcatcaccttcatgata 7943996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 730440 - 730353
Alignment:
Q  141 ttttgctcctcttccatttgcatcaacttaaatttccttcttaaagactgaagttttatctccttcaccttctcatctccttcatgat 228  Q
    |||||||| || ||||| |||||||| | ||| |||||||| ||||||||||| || |||  ||||||||| ||||| ||||||||||    
T  730440 ttttgctcttcctccatctgcatcaattcaaacttccttctcaaagactgaagcttaatcaacttcaccttatcatcgccttcatgat 730353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 63 - 229
Target Start/End: Original strand, 48612 - 48778
Alignment:
Q  63 tgttaatcagagattgtttcactgcatgccttcatctgatttacaacattaatcaacttaaagaggtaatcaagaatcttttgctcctcttccatttgca 162  Q
    |||| ||||| ||| | |||||| || |||||||||||||| |||| ||| || |  ||| ||| ||| |||  |||||| || || |||||||||||||    
T  48612 tgttgatcagtgatagcttcactacaagccttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgca 48711  T
Q  163 tcaacttaaatttccttcttaaagactgaagttttatctccttcaccttctcatctccttcatgata 229  Q
    ||| || |||||||||||| | ||| ||||| || |||  |||||| || ||||| |||||||||||    
T  48712 tcagctcaaatttccttctcagagattgaagcttaatcaacttcactttatcatcaccttcatgata 48778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 357
Target Start/End: Original strand, 48831 - 48907
Alignment:
Q  281 tcaaaatttcctccatcaacgccttgttgaatgaagaacactgctttgcaatccttcttctttaactccttatgtgc 357  Q
    ||||| |||||| ||||||  | ||||||||| |||||||  || |||||||| |||||||| || |||||||||||    
T  48831 tcaaagtttccttcatcaagactttgttgaatcaagaacagagccttgcaatctttcttcttcaattccttatgtgc 48907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 63 - 229
Target Start/End: Original strand, 8319251 - 8319417
Alignment:
Q  63 tgttaatcagagattgtttcactgcatgccttcatctgatttacaacattaatcaacttaaagaggtaatcaagaatcttttgctcctcttccatttgca 162  Q
    |||| ||||| ||| | |||||| || |||||||||||||| |||| ||| || |  ||| ||| ||| |||  |||||| || || |||||||||||||    
T  8319251 tgttgatcagtgatagcttcactacaagccttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgca 8319350  T
Q  163 tcaacttaaatttccttcttaaagactgaagttttatctccttcaccttctcatctccttcatgata 229  Q
    ||| || |||||||||||| | ||| ||||| || |||  |||||| || ||||| |||||||||||    
T  8319351 tcagctcaaatttccttctcagagattgaagcttaatcaacttcactttatcatcaccttcatgata 8319417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 63 - 229
Target Start/End: Complemental strand, 8051802 - 8051636
Alignment:
Q  63 tgttaatcagagattgtttcactgcatgccttcatctgatttacaacattaatcaacttaaagaggtaatcaagaatcttttgctcctcttccatttgca 162  Q
    |||| ||||| ||| | |||||| || |||||||||||||| |||| ||| || |  ||| ||| ||| |||  |||||| || || |||||||||||||    
T  8051802 tgttgatcagtgatagcttcactacaagccttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgca 8051703  T
Q  163 tcaacttaaatttccttcttaaagactgaagttttatctccttcaccttctcatctccttcatgata 229  Q
    ||| || |||||||||||| | ||| ||||| || |||  |||||| || ||||| |||||||||||    
T  8051702 tcagctcaaatttccttctcagagattgaagcttaatcaacttcactttatcatcaccttcatgata 8051636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 63 - 229
Target Start/End: Complemental strand, 36671461 - 36671295
Alignment:
Q  63 tgttaatcagagattgtttcactgcatgccttcatctgatttacaacattaatcaacttaaagaggtaatcaagaatcttttgctcctcttccatttgca 162  Q
    |||| ||||| ||| | |||||| || |||||||||||||| |||| ||| || |  ||| ||| ||| |||  |||||| || || |||||||||||||    
T  36671461 tgttgatcagtgatagcttcactacaagccttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgca 36671362  T
Q  163 tcaacttaaatttccttcttaaagactgaagttttatctccttcaccttctcatctccttcatgata 229  Q
    ||| || |||||||||||| | ||| ||||| || |||  |||||| || ||||| |||||||||||    
T  36671361 tcagctcaaatttccttctcagagattgaagcttaatcaacttcactttatcatcaccttcatgata 36671295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 63 - 229
Target Start/End: Complemental strand, 39794805 - 39794639
Alignment:
Q  63 tgttaatcagagattgtttcactgcatgccttcatctgatttacaacattaatcaacttaaagaggtaatcaagaatcttttgctcctcttccatttgca 162  Q
    |||| ||||| ||| | |||||| || |||||||||||||| |||| ||| || |  ||| ||| ||| |||  |||||| || || |||||||||||||    
T  39794805 tgttgatcagtgatagcttcactacaagccttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgca 39794706  T
Q  163 tcaacttaaatttccttcttaaagactgaagttttatctccttcaccttctcatctccttcatgata 229  Q
    ||| || |||||||||||| | ||| ||||| || |||  |||||| || ||||| |||||||||||    
T  39794705 tcagctcaaatttccttctcagagattgaagcttaatcaacttcactttatcatcaccttcatgata 39794639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 63 - 229
Target Start/End: Complemental strand, 26312423 - 26312257
Alignment:
Q  63 tgttaatcagagattgtttcactgcatgccttcatctgatttacaacattaatcaacttaaagaggtaatcaagaatcttttgctcctcttccatttgca 162  Q
    |||| ||||| ||| | |||||| || |||||||||||||| |||| ||| || |  ||| ||| ||| |||  |||||| || || |||||||||||||    
T  26312423 tgttgatcagtgatagcttcactacaagccttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgca 26312324  T
Q  163 tcaacttaaatttccttcttaaagactgaagttttatctccttcaccttctcatctccttcatgata 229  Q
    ||| || |||||||||||| | ||| || || || |||  |||||| || ||||| |||||||||||    
T  26312323 tcagctcaaatttccttctcagagattggagcttaatcaacttcactttatcatcaccttcatgata 26312257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University