View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21385_high_1 (Length: 597)
Name: NF21385_high_1
Description: NF21385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21385_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 90 - 587
Target Start/End: Complemental strand, 41754162 - 41753667
Alignment:
| Q |
90 |
ggtaggagataaaatccttcactacaacccttatcaatcaactatccataaatgttcaacgcatccacaatttaggaataaataaagtagcaattgcgtt |
189 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41754162 |
ggtaggagataaaatccttcactacaacccttatcaatcaactatccataaatgttcaacgcatccacaatttaggaataaataaagtagcaattgcgtt |
41754063 |
T |
|
| Q |
190 |
attggaaccactcgggtgtttacctcggataaacgctgtaacttttcatcttagttgcgtcgaccttttgaatttggtctcagaaaatcacaacaaatta |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41754062 |
attggaaccactcgggtgtttacctcggataaacgctgtaacttttcatcttagttgcgtcgaccttttgaatttggtctcagaaaatcacaacaaatta |
41753963 |
T |
|
| Q |
290 |
ctactccaaactgtgctacaacttaaccaacaagttggaaaaccggtttacgtgacattagacctctacaacgctttcctctctataattaaaactttgc |
389 |
Q |
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|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
41753962 |
ctactccaaactgtactacaacttaaccaacaggttggaaaaccggtttacgtgacattagacctctataacgctttcctctctataattaaaactttgc |
41753863 |
T |
|
| Q |
390 |
agaaaaagcgcgatggtatgttcttttgaacattttttcttcttataagcatggtgtgt-gnnnnnnnnnnnngtagaaaaagttgaaataataaataaa |
488 |
Q |
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|||||||||||||||||| |||||||||||| ||||||||||||||||||||||| | | ||||||||||||||||||||| ||| |
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| T |
41753862 |
agaaaaagcgcgatggtacgttcttttgaaccttttttcttcttataagcatggtatatatatatatatatatatagaaaaagttgaaataataacaaaa |
41753763 |
T |
|
| Q |
489 |
atttaatgatctgactactattgtctcgtaatttttgtagtaaagttgagcatatgattgattgtgattcgttaaaaatgtaattgtaaattgatgatg |
587 |
Q |
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| T |
41753762 |
atttaatgatctg---actattgtctcgtaatttttgtagtaaagttgagcatacgattgattgtgatttgttaaaaatgtaattgtaaattgatgatg |
41753667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 90 - 427
Target Start/End: Complemental strand, 41758417 - 41758077
Alignment:
| Q |
90 |
ggtaggagataaaatccttcactacaacccttatcaatcaactatccataaatgttcaacgcatccacaatttaggaataaataaagtagcaattgcgtt |
189 |
Q |
| |
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||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |
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| T |
41758417 |
ggtaggaaataaaatccttcactacaagccttatcaatcaactatccataaatgttcaacgcatccacaatttgggaataaataaagtagcaattggatt |
41758318 |
T |
|
| Q |
190 |
attggaaccactcgggtgtttacctcggataaacgctgtaacttttcatcttagttgcgtcgaccttttgaatttggtctcagaaaatcacaacaaatta |
289 |
Q |
| |
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|||||||||| | || ||||||||| ||||| |||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
41758317 |
attggaaccaattggatgtttacctgagataactttggtaactttccatcttagttgcgttgaccttttgaatttggtctcagaagatcacaacaaatta |
41758218 |
T |
|
| Q |
290 |
ctactccaaactgtgctacaacttaacca---acaagttggaaaaccggtttacgtgacattagacctctacaacgctttcctctctataattaaaactt |
386 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||| | ||||| |||||| ||||||||||||| ||||||||||||| |||||||||| |
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| T |
41758217 |
ctactccaaactgtgctacaacttaaccaacaacaagttggaaaatcagtttatgtgacactagacctctacaatgctttcctctctacaattaaaacta |
41758118 |
T |
|
| Q |
387 |
tgcagaaaaagcgcgatggtatgttcttttgaacatttttt |
427 |
Q |
| |
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|||||||||||| |||||||||| ||||||| | |||||| |
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| T |
41758117 |
tgcagaaaaagcatgatggtatgtccttttgatcttttttt |
41758077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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