View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21385_high_10 (Length: 244)
Name: NF21385_high_10
Description: NF21385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21385_high_10 |
 | |
|
| [»] scaffold0014 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 13 - 226
Target Start/End: Original strand, 23965210 - 23965422
Alignment:
| Q |
13 |
tgaagcatgtacccaggtagatcaatctgtgtatnnnnnnnnngttacaatttgaaaacttaatgatattaaaatgaaattttttgttatgatacaaaca |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23965210 |
tgaagcatgtacccaggtagatcaatctgtgtataaaaaaaaa-ttacaatttgaaaacttaatgatattaaaatgaaattttttgttatgatacaaaca |
23965308 |
T |
|
| Q |
113 |
atcatatatattgatgttaatattgacaataaagttaatgaaaacagggaaataaacttactcagtaaaggttatcaaaaacttccttgtaaaccacatc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23965309 |
atcatatatattgatgttaatattgacaataaagttaatgaaaacatggaaataaatttactcagtaaaggttatcaaaaacttccttgtaaaccacatt |
23965408 |
T |
|
| Q |
213 |
tgtggtgttggaaa |
226 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
23965409 |
tgtggtgctggaaa |
23965422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 13 - 226
Target Start/End: Complemental strand, 130318 - 130106
Alignment:
| Q |
13 |
tgaagcatgtacccaggtagatcaatctgtgtatnnnnnnnnngttacaatttgaaaacttaatgatattaaaatgaaattttttgttatgatacaaaca |
112 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
130318 |
tgaagaatgtaccgaggtagatcaatctgtgtataaaaaaaa-gttacaatttgaaaacttaatgatattaaaatgaaattttttgttatgatacaaaca |
130220 |
T |
|
| Q |
113 |
atcatatatattgatgttaatattgacaataaagttaatgaaaacagggaaataaacttactcagtaaaggttatcaaaaacttccttgtaaaccacatc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
130219 |
gtcatatatattgatgttaatattgacaataaagttaatgaaaacagggaaataaacttactcagtaaaggttatcaaaaacttccttgtaaaccacatt |
130120 |
T |
|
| Q |
213 |
tgtggtgttggaaa |
226 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
130119 |
tgtgttgttggaaa |
130106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 123; Significance: 3e-63; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 13 - 226
Target Start/End: Complemental strand, 33547665 - 33547442
Alignment:
| Q |
13 |
tgaagcatgtacccaggtagatcaatctgtgtatnnnnnnnnn-gttacaatttgaaaacttaatgatattaaaatgaaattttttgttatgatacaaac |
111 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
33547665 |
tgaagcatgtaccgaggttgatcaatctgtgtataaaaaaaaaagttacaatttgaaaacttcatgatattaaaa-gaaattttttgttatgatacaaac |
33547567 |
T |
|
| Q |
112 |
aatcatatatat----------tgatgttaatattgacaataaagttaatgaaaacagggaaataaacttactcagtaaaggttatcaaaaacttccttg |
201 |
Q |
| |
|
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
33547566 |
agtcatatatatatatatatattgatgttaatattgacaataaagttaatgaaaacagggaaataaacttactcagtaaaggttatcaaaaacttctttg |
33547467 |
T |
|
| Q |
202 |
taaaccacatctgtggtgttggaaa |
226 |
Q |
| |
|
|||||||||| |||||||||||||| |
|
|
| T |
33547466 |
taaaccacatttgtggtgttggaaa |
33547442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 116 - 226
Target Start/End: Complemental strand, 26227986 - 26227876
Alignment:
| Q |
116 |
atatatattgatgttaatattgacaataaagttaatgaaaacagggaaataaacttactcagtaaaggttatcaaaaacttccttgtaaaccacatctgt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
26227986 |
atatatattgatgttaatattgacaataaagttaatgaaaacagggaaataaacttactcagtaaaggttatcaaaaacttccttgtaaaccacatttgt |
26227887 |
T |
|
| Q |
216 |
ggtgttggaaa |
226 |
Q |
| |
|
||||||||||| |
|
|
| T |
26227886 |
ggtgttggaaa |
26227876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 56 - 123
Target Start/End: Complemental strand, 26228089 - 26228023
Alignment:
| Q |
56 |
gttacaatttgaaaacttaatgatattaaaatgaaattttttgttatgatacaaacaatcatatatat |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
26228089 |
gttacaatttgaaaacttaatgatattaaaa-gaaattttttgttatgatacaaacagtcatatatat |
26228023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University