View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21385_high_3 (Length: 448)
Name: NF21385_high_3
Description: NF21385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21385_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 129 - 427
Target Start/End: Original strand, 42641997 - 42642295
Alignment:
| Q |
129 |
aacaagatataagtaagctcgtatagacatattcatgtgtatatctctgtcagcctattcatcattggttcactatcgagctgcaaggcttgtggtgatg |
228 |
Q |
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| T |
42641997 |
aacaagatataagtaagctcgtatagacatagtcatgtgtatatctctgtcagcctattcaccattggttcactatcgagctgcaaggcttgtggtgatg |
42642096 |
T |
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| Q |
229 |
aaactcgtaggtttcaagacgtcaattgtaggttatgcgggtatacctttcaattttttgcactcactataagcatcttctatgtccgaaccatgtaact |
328 |
Q |
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| T |
42642097 |
aaactcataggtttcaagacgtcaattgtaggttatgcgggtatacctttcaattttttgcactcactataagcatcttctatgtccgaaccatgtaact |
42642196 |
T |
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| Q |
329 |
cattaagcaacacaacaccgtcttctttgctcatttgccctcaatggttcatcatttttcaatgtatagcaagtgcaaaaggcataacatatcattaag |
427 |
Q |
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| T |
42642197 |
cattaagcaacacaacaccgtcttctttgctcatttgccttcaatggttcatcatttttcaatgtatagcaagtgcaaaaggcataacatatcattaag |
42642295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 42641675 - 42641809
Alignment:
| Q |
1 |
tgtttcaatattttttaaaaatataatgttaatgtaagtaattgttttgcactaagacgagagttaaccattctacaatattcttccactttttaagtgg |
100 |
Q |
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| T |
42641675 |
tgtttcaatattttaaaaaaatataatgttaatgtaaata-ttgttttgcactaagacgagagttaaccattctacgatattcttccactttttaagtgg |
42641773 |
T |
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| Q |
101 |
attttgaaattatttgcatgagtaaactaacaagat |
136 |
Q |
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| T |
42641774 |
attttgaaattatttgcatgagtaaactaacaagat |
42641809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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