View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21385_high_5 (Length: 412)
Name: NF21385_high_5
Description: NF21385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21385_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 180; Significance: 4e-97; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 193 - 395
Target Start/End: Complemental strand, 9391653 - 9391453
Alignment:
| Q |
193 |
gattcatggaaatgaattaaggaagtgaaaaatatcatttatatagagcttagggttatttcaagcgcatgagcgctaagattatgctactggagcaata |
292 |
Q |
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| T |
9391653 |
gattcatggaaatgaattaaggaagtgaaaaatatcatttatatagagcttagggttatttcaagcgcatgagcgctaagattatgctactggagcaata |
9391554 |
T |
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| Q |
293 |
ttgctaactgtatctcatgtcttgaccacctcatgtgacatcacccacatagactaacatgaacgagacatgtggcaagcattcatgatttaaccgccac |
392 |
Q |
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| T |
9391553 |
ttgctaactgtgtctcatgtcttgaccacctcatgtgacatcacccac--agactaacatgaacgagaaatggggcaagcattcatgatttaaccgccac |
9391456 |
T |
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| Q |
393 |
ttg |
395 |
Q |
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||| |
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| T |
9391455 |
ttg |
9391453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 14 - 152
Target Start/End: Complemental strand, 9391880 - 9391742
Alignment:
| Q |
14 |
catcagaggaaactaagaaatcatatattaatcaaaggaacatgggtaacactcatgtaaacatgttcctgaaatggaaagaaaagaatcaaagatcaag |
113 |
Q |
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| T |
9391880 |
catcagaggaaactaagaaatcatatattaatcaaaggaacatgggtaacactcatgtaaacatgttactgaaatggaaagaaaagaatcaaagatcaag |
9391781 |
T |
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| Q |
114 |
acaaaatcctaacacatattaagtattgcaaaagtgcaa |
152 |
Q |
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| T |
9391780 |
acaaaatcctaacacatattaagtattgcaaaagtgcaa |
9391742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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