View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21385_high_8 (Length: 264)

Name: NF21385_high_8
Description: NF21385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21385_high_8
NF21385_high_8
[»] scaffold0164 (1 HSPs)
scaffold0164 (17-250)||(16544-16777)
[»] chr2 (4 HSPs)
chr2 (17-250)||(24072084-24072317)
chr2 (105-250)||(44482925-44483072)
chr2 (17-101)||(44483370-44483454)
chr2 (31-100)||(39905406-39905475)
[»] chr5 (2 HSPs)
chr5 (107-250)||(19834056-19834199)
chr5 (28-101)||(19833692-19833765)
[»] chr7 (4 HSPs)
chr7 (105-250)||(18566147-18566292)
chr7 (17-101)||(18565796-18565880)
chr7 (27-85)||(26643445-26643503)
chr7 (20-100)||(45631925-45632004)
[»] chr4 (3 HSPs)
chr4 (105-250)||(18809392-18809537)
chr4 (17-101)||(18809193-18809277)
chr4 (27-85)||(51032888-51032946)
[»] chr3 (1 HSPs)
chr3 (20-100)||(53161220-53161300)


Alignment Details
Target: scaffold0164 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 17 - 250
Target Start/End: Original strand, 16544 - 16777
Alignment:
Q  17 tttaagggggaggagttgaaaggaaatgaaagattctatggcgtgtttcaaattaaaggttatgacttgaaatttaattactttaaaatgattatctccc 116  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16544 tttaagcgggaggagttgaaaggaaatgaaaaattctatggcgtgtttcaaattaaaggttatgacttgaaatttaattactttaaaatgattatctccc 16643  T
Q  117 ttactttgggtggatttaacaagtataacatagcgaacaggtcatagataaccacttactaaagaaacatgtaattgatcccttcnnnnnnnctataaac 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||    
T  16644 ttactttgggtggatttaacaagtataacatagcgaacaggtcatagataaccacttactaaagaaacatgtaattgatcccttcaaaaaaactataaac 16743  T
Q  217 taattgtcatacatacagacactaaagtgaaatt 250  Q
    ||||||||||||||||||||||||||||||||||    
T  16744 taattgtcatacatacagacactaaagtgaaatt 16777  T

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Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 17 - 250
Target Start/End: Original strand, 24072084 - 24072317
Alignment:
Q  17 tttaagggggaggagttgaaaggaaatgaaagattctatggcgtgtttcaaattaaaggttatgacttgaaatttaattactttaaaatgattatctccc 116  Q
    |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24072084 tttaagggggagaagttgaaaggaaatgaaaaattctatggcgtgtttcaaattaaaggttatgacttgaaatttaattactttaaaatgattatctccc 24072183  T
Q  117 ttactttgggtggatttaacaagtataacatagcgaacaggtcatagataaccacttactaaagaaacatgtaattgatcccttcnnnnnnnctataaac 216  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||       ||||||||    
T  24072184 ttactttgggtggatttaacaagtataacatagcaaacaggtcatagataaccacttactgaagaaacatgtaattgatcccttcaaaaaaactataaac 24072283  T
Q  217 taattgtcatacatacagacactaaagtgaaatt 250  Q
    ||||||||| ||||||| ||||||||||||||||    
T  24072284 taattgtcacacatacatacactaaagtgaaatt 24072317  T

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Target: chr2; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 105 - 250
Target Start/End: Complemental strand, 44483072 - 44482925
Alignment:
Q  105 tgattatctcccttactttgggtggatttaacaagtataacatagcgaacaggtcatagataaccacttactaaagaaacatgtaattgatcccttc--n 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||       
T  44483072 tgattatctcccttactttgggtggatttaacaagtataacatagcgaacaggtcataaataaccacttactagagaaacatgtaaatgatcccttcaaa 44482973  T
Q  203 nnnnnnctataaactaattgtcatacatacagacactaaagtgaaatt 250  Q
          |||||||||||||| || ||||||| ||||||||||||||||    
T  44482972 aaaaaactataaactaattggcacacatacatacactaaagtgaaatt 44482925  T

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Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 44483454 - 44483370
Alignment:
Q  17 tttaagggggaggagttgaaaggaaatgaaagattctatggcgtgtttcaaattaaaggttatgacttgaaatttaattacttta 101  Q
    |||||||||||||||||||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44483454 tttaagggggaggagttgaaaggaaattgaaaattctatggcgtgtttcaaattaaaggttatgacttgaaatttaattacttta 44483370  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 100
Target Start/End: Original strand, 39905406 - 39905475
Alignment:
Q  31 gttgaaaggaaatgaaagattctatggcgtgtttcaaattaaaggttatgacttgaaatttaattacttt 100  Q
    ||||||||||||||  | ||||||| || ||||| |||| ||||||| ||||||||||| ||||| ||||    
T  39905406 gttgaaaggaaatggtaaattctatagcatgtttaaaatcaaaggttgtgacttgaaatctaatttcttt 39905475  T

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Target: chr5 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 107 - 250
Target Start/End: Original strand, 19834056 - 19834199
Alignment:
Q  107 attatctcccttactttgggtggatttaacaagtataacatagcgaacaggtcatagataaccacttactaaagaaacatgtaattgatcccttcnnnnn 206  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||         
T  19834056 attatttcccttactttgggtggatttaacaagtataacatagtgaacagatcatagataaccacttactagagaaacatgtaattgatcccttcaaaaa 19834155  T
Q  207 nnctataaactaattgtcatacatacagacactaaagtgaaatt 250  Q
      ||||||||||||||||| ||||||||||||||||||||||||    
T  19834156 aactataaactaattgtcacacatacagacactaaagtgaaatt 19834199  T

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Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 28 - 101
Target Start/End: Original strand, 19833692 - 19833765
Alignment:
Q  28 ggagttgaaaggaaatgaaagattctatggcgtgtttcaaattaaaggttatgacttgaaatttaattacttta 101  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19833692 ggagttgaaaggaaatggaaaattctatggcgtgtttcaaattaaaggttatgacttgaaatttaattacttta 19833765  T

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Target: chr7 (Bit Score: 101; Significance: 4e-50; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 105 - 250
Target Start/End: Original strand, 18566147 - 18566292
Alignment:
Q  105 tgattatctcccttactttgggtggatttaacaagtataacatagcgaacaggtcatagataaccacttactaaagaaacatgtaattgatcccttcnnn 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||| |||||||| ||||||||||       
T  18566147 tgattatctcccttactttgggtggatttaacaagtataacatagcgaataggtcattgataaccacttactagagagacatgtaaatgatcccttcaaa 18566246  T
Q  205 nnnnctataaactaattgtcatacatacagacactaaagtgaaatt 250  Q
        ||||||||||||||||| ||||||||||||||||||||||||    
T  18566247 aaaactataaactaattgtcacacatacagacactaaagtgaaatt 18566292  T

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Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 18565796 - 18565880
Alignment:
Q  17 tttaagggggaggagttgaaaggaaatgaaagattctatggcgtgtttcaaattaaaggttatgacttgaaatttaattacttta 101  Q
    |||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  18565796 tttaagggggaggagttgaaaggaaatggaaaattctatggcgtatttcaaattaaaggttatgacttgaaatttaattacttta 18565880  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 85
Target Start/End: Original strand, 26643445 - 26643503
Alignment:
Q  27 aggagttgaaaggaaatgaaagattctatggcgtgtttcaaattaaaggttatgacttg 85  Q
    ||||||||||||||||||  | |||| ||||| |||||||||| ||||||| |||||||    
T  26643445 aggagttgaaaggaaatggtaaattccatggcatgtttcaaatcaaaggttgtgacttg 26643503  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 45631925 - 45632004
Alignment:
Q  20 aagggggaggagttgaaaggaaatgaaagattctatggcgtgtttcaaattaaaggttatgacttgaaatttaattacttt 100  Q
    |||||| ||||||||||| ||||||  | |||||||||| | ||| |||| ||||||| ||||||||||| ||||| ||||    
T  45631925 aaggggaaggagttgaaatgaaatggtaaattctatggcat-ttttaaatcaaaggttgtgacttgaaatctaatttcttt 45632004  T

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Target: chr4 (Bit Score: 97; Significance: 9e-48; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 105 - 250
Target Start/End: Original strand, 18809392 - 18809537
Alignment:
Q  105 tgattatctcccttactttgggtggatttaacaagtataacatagcgaacaggtcatagataaccacttactaaagaaacatgtaattgatcccttcnnn 204  Q
    |||||||||||||||||||| ||||||||||||||||||| |||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||        
T  18809392 tgattatctcccttactttgagtggatttaacaagtataatatagtgaacatgtcatagataaccacttactagagaaacatgtaattgatcccttaaaa 18809491  T
Q  205 nnnnctataaactaattgtcatacatacagacactaaagtgaaatt 250  Q
        ||||||||||||||||| ||||||||||||||||||||||||    
T  18809492 aaaactataaactaattgtcacacatacagacactaaagtgaaatt 18809537  T

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Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 18809193 - 18809277
Alignment:
Q  17 tttaagggggaggagttgaaaggaaatgaaagattctatggcgtgtttcaaattaaaggttatgacttgaaatttaattacttta 101  Q
    |||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  18809193 tttaagggggaggagttgaaaggaaatggaaaattctatgacgtgtttcaaattaaaggttatgacttgaaatttaattacttta 18809277  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 85
Target Start/End: Complemental strand, 51032946 - 51032888
Alignment:
Q  27 aggagttgaaaggaaatgaaagattctatggcgtgtttcaaattaaaggttatgacttg 85  Q
    ||||||||||||||||||  | ||| |||||| |||||||||| ||||||| |||||||    
T  51032946 aggagttgaaaggaaatggcaaattttatggcatgtttcaaatcaaaggttgtgacttg 51032888  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 53161300 - 53161220
Alignment:
Q  20 aagggggaggagttgaaaggaaatgaaagattctatggcgtgtttcaaattaaaggttatgacttgaaatttaattacttt 100  Q
    ||||||||||||||||||| || ||  | |||||||||| |||||||||| ||||| | ||||||||||| ||||| ||||    
T  53161300 aagggggaggagttgaaagtaactggtaaattctatggcatgtttcaaatcaaaggctgtgacttgaaatctaatttcttt 53161220  T

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