View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21385_high_9 (Length: 249)

Name: NF21385_high_9
Description: NF21385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21385_high_9
NF21385_high_9
[»] scaffold0164 (2 HSPs)
scaffold0164 (99-245)||(16227-16373)
scaffold0164 (1-45)||(16427-16471)
[»] chr2 (4 HSPs)
chr2 (99-245)||(44483625-44483771)
chr2 (99-245)||(24071767-24071913)
chr2 (1-45)||(24071967-24072011)
chr2 (1-45)||(44483527-44483571)
[»] chr5 (2 HSPs)
chr5 (99-245)||(19833361-19833507)
chr5 (1-45)||(19833561-19833605)
[»] chr4 (2 HSPs)
chr4 (99-245)||(18808876-18809022)
chr4 (1-45)||(18809076-18809120)
[»] chr1 (2 HSPs)
chr1 (99-245)||(44197580-44197726)
chr1 (100-245)||(19191418-19191563)
[»] chr7 (2 HSPs)
chr7 (99-170)||(18565555-18565626)
chr7 (5-45)||(18565680-18565720)


Alignment Details
Target: scaffold0164 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 99 - 245
Target Start/End: Complemental strand, 16373 - 16227
Alignment:
Q  99 caatctatgttatcaaaacaaagtgaatgtgctttcgttaaaactttgtaacatgcaattaaaactatgaataaaccactttctcggtcttttgtgcaac 198  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  16373 caatctatgttttcaaaacaaagtgaatgtgctttcgttaaaactttgtaacatgcaattaaaactatgaataaaccactttctcggtcttttgcgcaac 16274  T
Q  199 ctttatccttccataattggtgtgattgccaagagagtataatctac 245  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||    
T  16273 ctttatccttccatcattggtgtgattgccaagagagtatagtctac 16227  T

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Target: scaffold0164; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 16471 - 16427
Alignment:
Q  1 acgtcactacaaaaaatcaaggggaagaagtaaattagttggaga 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  16471 acgtcactacaaaaaatcaaggggaagaagtaaattagttggaga 16427  T

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Target: chr2 (Bit Score: 127; Significance: 1e-65; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 99 - 245
Target Start/End: Original strand, 44483625 - 44483771
Alignment:
Q  99 caatctatgttatcaaaacaaagtgaatgtgctttcgttaaaactttgtaacatgcaattaaaactatgaataaaccactttctcggtcttttgtgcaac 198  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  44483625 caatctatgttttcaaaacaaagtgaatgtgctttcgttaaaactttgtaacatgcaatgaaaactatgaataaaccactttctcggtcttttgcgcaac 44483724  T
Q  199 ctttatccttccataattggtgtgattgccaagagagtataatctac 245  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||    
T  44483725 ctttatccttccatcattggtgtgattgccaagagagtatagtctac 44483771  T

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Target: chr2; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 99 - 245
Target Start/End: Complemental strand, 24071913 - 24071767
Alignment:
Q  99 caatctatgttatcaaaacaaagtgaatgtgctttcgttaaaactttgtaacatgcaattaaaactatgaataaaccactttctcggtcttttgtgcaac 198  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  24071913 caatctatgttttcaaaacaaagtgaatgtgctttcgttaaaactttgttacatgcaatgaaaactatgaataaaccactttctcggtcttttgcgcaac 24071814  T
Q  199 ctttatccttccataattggtgtgattgccaagagagtataatctac 245  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||    
T  24071813 ctttatccttccatcattggtgtgattgccaagagagtatagtctac 24071767  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 24072011 - 24071967
Alignment:
Q  1 acgtcactacaaaaaatcaaggggaagaagtaaattagttggaga 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  24072011 acgtcactacaaaaaatcaaggggaagaagtaaattagttggaga 24071967  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 44483527 - 44483571
Alignment:
Q  1 acgtcactacaaaaaatcaaggggaagaagtaaattagttggaga 45  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  44483527 acgtcactacacaaaatcaaggggaagaagtaaattagttggaga 44483571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 99 - 245
Target Start/End: Complemental strand, 19833507 - 19833361
Alignment:
Q  99 caatctatgttatcaaaacaaagtgaatgtgctttcgttaaaactttgtaacatgcaattaaaactatgaataaaccactttctcggtcttttgtgcaac 198  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  19833507 caatcaatgttttcaaaacaaagtgaatgtgctttcgttaaaactttgtaacatgcaatgaaaactatgaataaaccactttctcggtcttttgcgcaac 19833408  T
Q  199 ctttatccttccataattggtgtgattgccaagagagtataatctac 245  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||    
T  19833407 ctttatccttccatcattggtgtgattgccaagagagtatagtctac 19833361  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 19833605 - 19833561
Alignment:
Q  1 acgtcactacaaaaaatcaaggggaagaagtaaattagttggaga 45  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  19833605 acgtcactacacaaaatcaaggggaagaagtaaattagttggaga 19833561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 119; Significance: 7e-61; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 99 - 245
Target Start/End: Complemental strand, 18809022 - 18808876
Alignment:
Q  99 caatctatgttatcaaaacaaagtgaatgtgctttcgttaaaactttgtaacatgcaattaaaactatgaataaaccactttctcggtcttttgtgcaac 198  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  18809022 caatctatgttttcaaaacaaagtgactgtgctttcgttaaaactttgtaacatgcaatgaaaactatgaataaaccactttctcggtcttttgcgcaac 18808923  T
Q  199 ctttatccttccataattggtgtgattgccaagagagtataatctac 245  Q
     ||||||||||||| |||||||||||||||||||||||||| |||||    
T  18808922 atttatccttccatcattggtgtgattgccaagagagtatagtctac 18808876  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 18809120 - 18809076
Alignment:
Q  1 acgtcactacaaaaaatcaaggggaagaagtaaattagttggaga 45  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  18809120 acgtcactacacaaaatcaaggggaagaagtaaattagttggaga 18809076  T

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Target: chr1 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 99 - 245
Target Start/End: Complemental strand, 44197726 - 44197580
Alignment:
Q  99 caatctatgttatcaaaacaaagtgaatgtgctttcgttaaaactttgtaacatgcaattaaaactatgaataaaccactttctcggtcttttgtgcaac 198  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||| |||||||| ||| |||||  ||||    
T  44197726 caatctatgttttcaaaacaaagtgaatgtgcttttgttaaaactttgtaacatgcaatgaaaactataaataaatcactttctaggttttttgcacaac 44197627  T
Q  199 ctttatccttccataattggtgtgattgccaagagagtataatctac 245  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||    
T  44197626 ctttatccttccatcattggtgtgattgccaagagagtatagtctac 44197580  T

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Target: chr1; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 100 - 245
Target Start/End: Complemental strand, 19191563 - 19191418
Alignment:
Q  100 aatctatgttatcaaaacaaagtgaatgtgctttcgttaaaactttgtaacatgcaattaaaactatgaataaaccactttctcggtcttttgtgcaacc 199  Q
    |||||||||| |||||||||||||||| | |||| ||||||||||||||||||||||| |||||||| ||||| ||||||||| |||||||||  |||||    
T  19191563 aatctatgttttcaaaacaaagtgaatatacttttgttaaaactttgtaacatgcaatgaaaactataaataagccactttctaggtcttttgcacaacc 19191464  T
Q  200 tttatccttccataattggtgtgattgccaagagagtataatctac 245  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||    
T  19191463 tttatccttccatcattggtgtgattgccaagagagtatagtctac 19191418  T

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Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 99 - 170
Target Start/End: Complemental strand, 18565626 - 18565555
Alignment:
Q  99 caatctatgttatcaaaacaaagtgaatgtgctttcgttaaaactttgtaacatgcaattaaaactatgaat 170  Q
    ||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||    
T  18565626 caatctatgttttcaaaacaaagctaatgtgctttcgttaaaactttgtaacatgcaatgaaaactatgaat 18565555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 18565720 - 18565680
Alignment:
Q  5 cactacaaaaaatcaaggggaagaagtaaattagttggaga 45  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  18565720 cactacacaaaatcaaggggaagaagtaaattagttggaga 18565680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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