View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21385_low_2 (Length: 560)
Name: NF21385_low_2
Description: NF21385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21385_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 1 - 547
Target Start/End: Original strand, 4559842 - 4560388
Alignment:
| Q |
1 |
ccctcgaatggatccttgcttgctatccaaggaaagcctaggaagctccttataccttgtagtagatttcaatgcatcataagagagccgcggagagtcc |
100 |
Q |
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| T |
4559842 |
ccctcgaatggatccttgcttgctgtccaaggaaagcctaggaagctccttataccttgtagtagatttcaatgcatcataagagagtcgcggagagtcc |
4559941 |
T |
|
| Q |
101 |
caatgtgcnnnnnnngacctcgaaagagtatgtaatggttccttcgaaactataacaggccttggagagtctatgtgttggttcaatgaataaccctgac |
200 |
Q |
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| T |
4559942 |
caatgtgctttttttgacctcgaaagagtatgtaatggttccttcgaaactataacaggccttggagagtctatgtgttggttcaatgaataaccatgac |
4560041 |
T |
|
| Q |
201 |
cctttatttcttgtttggttaatgttttcacatataaccctttagcttctctatgcattgaatctttgacaatatcaaataaatcaactgatacttttga |
300 |
Q |
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| T |
4560042 |
cctttatttcttgtttggttaatgttttcacatataactctttagcttctctatgcattgaatctttgacaatatcaaagaaatcaactgatacttttga |
4560141 |
T |
|
| Q |
301 |
atgtggatttcttgaaatttgaatttgtttggttgacaatgattctgtcttaattattccgttaaattcataggatgtcatgctagatgaacaagatgat |
400 |
Q |
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| T |
4560142 |
atgtggatttcttgaaatttgaatttgtttggttgacaatgattctgtcttaattattccgttaaattcataggatgtcatgctagatgaacaagatgat |
4560241 |
T |
|
| Q |
401 |
gaagagacagaagttactgatgattctgtggagaattgttgcttctcttttgcaatcttttgattcttttcctgcattcataatcatatgttattaatgg |
500 |
Q |
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| T |
4560242 |
gaagagacagaagttactgatgattctgtggagaattgttgcttctcttttgcaatcttttgattcttttcctgcattcataatcatatgttattaatgg |
4560341 |
T |
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| Q |
501 |
tttttgccaacatttttcaaagagtaaaactatagttatctttacct |
547 |
Q |
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| T |
4560342 |
tttttgccaacatttttcaaatagtaaaactatagttatctttacct |
4560388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 373 - 482
Target Start/End: Original strand, 5025723 - 5025835
Alignment:
| Q |
373 |
ggatgtcatgctagatgaacaagatgatgaagagacagaagttactgat---gattctgtggagaattgttgcttctcttttgcaatcttttgattcttt |
469 |
Q |
| |
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||||| |||||||||||||||||| || ||||| | |||||| ||||| |||||||||||| ||||||| |||||| ||| || ||| ||||||| |
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| T |
5025723 |
ggatgacatgctagatgaacaagacgacgaagacatggaagttcctgatgatgattctgtggaggattgttgattctctcttggaaccttcacattcttt |
5025822 |
T |
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| Q |
470 |
tcctgcattcata |
482 |
Q |
| |
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|||||| ||||| |
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| T |
5025823 |
gcctgcaatcata |
5025835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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