View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21385_low_3 (Length: 520)
Name: NF21385_low_3
Description: NF21385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21385_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 438; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 1 - 482
Target Start/End: Complemental strand, 36146822 - 36146341
Alignment:
| Q |
1 |
gcatccagtcacagagcttcatgaagtttgtcaaaagaaaagtctcaagttacaattcagagatttgtggaaagagactatgagagttgaagtccttata |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
36146822 |
gcatccagtcacagagcttcatgaagtttgtcaaaagaaaagtctcaagttacaattcagagatttgtggaaagagactatgagaattgaagtccttata |
36146723 |
T |
|
| Q |
101 |
aatgaggagtttgttggaagtggtgtttatggctctaagaaagaaattgcacacaatagggcagcaaaaaatgctttggaaaatatggaaaaaattcttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36146722 |
aatgaggagtttgttggaagtggtgtttatggctctaagaaagaaattgcacacaatagggcagcaaaaaatgctttggaaaatatggaaaaaattcttg |
36146623 |
T |
|
| Q |
201 |
gtataagcacgtctacaaaagaagatgttaccgaagatttagattccccttctaagtgcaatggaggtccagatgctaccgaaaatttaagttccccacc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| | |
|
|
| T |
36146622 |
gtataagcacgtctacaaaagaagatgttaccgaagatttagattccccttctaagtgcaatggaggttcagatgttaccgaaaatttaagttccccatc |
36146523 |
T |
|
| Q |
301 |
taaatgcaatggaggtcaagatgctaccgaagatttaggttcccctcctaagtgcaatggagatctagatgctattgaaggttcgccaaagtgcaatgga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
36146522 |
taaatgcaatggaggtcaagatgctaccgaagatttaggttctcctcctaagtgcaatggagatctagatgctatcgaaggttcgccaaagtgcaatgga |
36146423 |
T |
|
| Q |
401 |
ggcccacatgttaccgaagatttaggtttccttcctaaatgcaatggagatccagatgctattagagatttaggttccccaa |
482 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
36146422 |
ggcccagatgttaccgaagatttaggttttcttcataaatgcaatggaggtccagatgctattagagatttaggtttcccaa |
36146341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 12 - 499
Target Start/End: Complemental strand, 36075436 - 36074949
Alignment:
| Q |
12 |
cagagcttcatgaagtttgtcaaaagaaaagtctcaagttacaattcagagatttgtggaaagagactatgagagttgaagtccttataaatgaggagtt |
111 |
Q |
| |
|
|||||||| ||||| ||||||| |||| | |||||||||| |||||||||||||||||||||| || || ||||||||| ||||||| |||||| || |
|
|
| T |
36075436 |
cagagcttaatgaattttgtcagaagagaggtctcaagttgcaattcagagatttgtggaaagtatctgagatagttgaagttcttataagtgaggaatt |
36075337 |
T |
|
| Q |
112 |
tgttggaagtggtgtttatggctctaagaaagaaattgcacacaatagggcagcaaaaaatgctttggaaaatatggaaaaaattcttggtataagcacg |
211 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| || |||||||||| || |
|
|
| T |
36075336 |
ggttggaagtggcaagtgtggctctaagaaagaaattgcacacaatagggcagcaaaaaatgctttggaatatatgaaaagaaaatttggtataagtaca |
36075237 |
T |
|
| Q |
212 |
tctacaaaagaagatgttaccgaagatttagattccccttctaagtgcaatggaggtccagatgctaccgaaaatttaagttccccacctaaatgcaatg |
311 |
Q |
| |
|
||||||| ||| |||| |||||||||||| ||||| ||| ||| |||||||||||||||| ||||| |||| ||||||||| ||| |||||| |||| |
|
|
| T |
36075236 |
tctacaagagatgatgctaccgaagattttgattctcctcctagatgcaatggaggtccagctgctatcgaagatttaagttttccatctaaatataatg |
36075137 |
T |
|
| Q |
312 |
gaggtcaagatgctaccgaagatttaggttcccctcctaagtgcaatggagatctagatgctattgaaggttcgccaaagtgcaatggaggcccacatgt |
411 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||| || || |||| || |||||||| |||||||| | |||||||| ||||| ||| |||| |
|
|
| T |
36075136 |
gaggttcagatgctaccgaagatttaggttccccttctaaatgtaacggaggtccagatgctaccgaaggttcacataagtgcaacggaggtccaaatgt |
36075037 |
T |
|
| Q |
412 |
taccgaagatttaggtttccttcctaaatgcaatggagatccagatgctattagagatttaggttccccaactaaatgcaatggaggt |
499 |
Q |
| |
|
||| ||||||||| ||||| |||| || | ||| || | ||||||||| ||||||||||||| || |||| |||||||||||| |
|
|
| T |
36075036 |
tactgaagatttaagtttcattcccaagtacaacataggtttagatgctatagaagatttaggttcctcagctaagtgcaatggaggt |
36074949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 12 - 191
Target Start/End: Complemental strand, 36156688 - 36156509
Alignment:
| Q |
12 |
cagagcttcatgaagtttgtcaaaagaaaagtctcaagttacaattcagagatttgtggaaagagactatgagagttgaagtccttataaatgaggagtt |
111 |
Q |
| |
|
|||||||||| ||||||||||| ||||||| | || ||||||||| ||| |||||| || | |||||| |||| ||| | || |||||| | || |
|
|
| T |
36156688 |
cagagcttcaagaagtttgtcagaagaaaaaattgaatttacaattcgtagacttgtgggaaaaatctatgaacattgatgtcttcatcaatgagaaatt |
36156589 |
T |
|
| Q |
112 |
tgttggaagtggtgtttatggctctaagaaagaaattgcacacaatagggcagcaaaaaatgctttggaaaatatggaaa |
191 |
Q |
| |
|
||||||||| || |||||||||||||||||| |||||||| |||| || ||||||||||||||||| ||||| |||| |
|
|
| T |
36156588 |
tgttggaagaggcacttatggctctaagaaagacattgcacattatagagctgcaaaaaatgctttggataatatagaaa |
36156509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 191
Target Start/End: Complemental strand, 36162709 - 36162540
Alignment:
| Q |
22 |
tgaagtttgtcaaaagaaaagtctcaagttacaattcagagatttgtggaaagagactatgagagttgaagtccttataaatgaggagtttgttggaagt |
121 |
Q |
| |
|
|||||||||||| ||||||| | || ||||||||| ||| ||||||||||| |||||| |||| ||| ||||||||||| | ||||||||||| |
|
|
| T |
36162709 |
tgaagtttgtcagaagaaaaaattgaatttacaattcgtagacttgtggaaagaatctatgaacattgatgtctttataaatgagaaatttgttggaaga |
36162610 |
T |
|
| Q |
122 |
ggtgtttatggctctaagaaagaaattgcacacaatagggcagcaaaaaatgctttggaaaatatggaaa |
191 |
Q |
| |
|
|| |||||||||||||||||| ||||||| |||| || ||||| ||||||||| | ||||| |||| |
|
|
| T |
36162609 |
ggcacttatggctctaagaaagacattgcacgttatagagctgcaaagaatgctttgaataatatagaaa |
36162540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 497
Target Start/End: Complemental strand, 36146569 - 36146461
Alignment:
| Q |
389 |
aagtgcaatggaggcccacatgttaccgaagatttaggtttccttcctaaatgcaatggagatccagatgctattagagatttaggttccccaactaaat |
488 |
Q |
| |
|
|||||||||||||| || ||||||||||| ||||| ||| || ||||||||||||||| || |||||||| |||||||||||| || |||| | |
|
|
| T |
36146569 |
aagtgcaatggaggttcagatgttaccgaaaatttaagttccccatctaaatgcaatggaggtcaagatgctaccgaagatttaggttctcctcctaagt |
36146470 |
T |
|
| Q |
489 |
gcaatggag |
497 |
Q |
| |
|
||||||||| |
|
|
| T |
36146469 |
gcaatggag |
36146461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 408 - 499
Target Start/End: Complemental strand, 36146598 - 36146507
Alignment:
| Q |
408 |
atgttaccgaagatttaggtttccttcctaaatgcaatggagatccagatgctattagagatttaggttccccaactaaatgcaatggaggt |
499 |
Q |
| |
|
|||||||||||||||||| || || | |||| |||||||||| | |||||| || | ||||| |||||||| ||||||||||||||||| |
|
|
| T |
36146598 |
atgttaccgaagatttagattccccttctaagtgcaatggaggttcagatgttaccgaaaatttaagttccccatctaaatgcaatggaggt |
36146507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 12 - 354
Target Start/End: Original strand, 26530211 - 26530553
Alignment:
| Q |
12 |
cagagcttcatgaagtttgtcaaaagaaaagtctcaagttacaattcagagatttgtggaaagagactatgagagttgaagtccttataaatgaggagtt |
111 |
Q |
| |
|
|||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
26530211 |
cagagcttcatgaagtttgtcacaataaaagactcaagttacaattcagagatttgtggaaagagtctatgagagttgaagtccttataaatgaggagtt |
26530310 |
T |
|
| Q |
112 |
tgttggaagtggtgtttatggctctaagaaagaaattgcacacaatagggcagcaaaaaatgctttggaaaatatggaaaaaattcttggtataagcacg |
211 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||| || |||||||||| | |
|
|
| T |
26530311 |
tgttggaagtggtgtttatggttctaagaaagaaattgcacgcaatagggcagcaaaaaatgttttgcaaaatatggaaattttttttggtataagtgca |
26530410 |
T |
|
| Q |
212 |
tctacaaaagaagatgttaccgaagatttagattccccttctaagtgcaatggaggtccagatgctaccgaaaatttaagttccccacctaaatgcaatg |
311 |
Q |
| |
|
||||| || |||| || |||| |||||||||||| ||||||||||||| ||| | || |||||||||||||| |||||||||||| |||||| ||||||| |
|
|
| T |
26530411 |
tctaccaacgaagttgctaccaaagatttagatttcccttctaagtgcgatgaaagttcagatgctaccgaagatttaagttccctacctaagtgcaatg |
26530510 |
T |
|
| Q |
312 |
gaggtcaagatgctaccgaagatttaggttcccctcctaagtg |
354 |
Q |
| |
|
|||||| | |||||| |||| ||| ||||||||||||||| |
|
|
| T |
26530511 |
gaggtccaaatgctattaaagacttacattcccctcctaagtg |
26530553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 225 - 362
Target Start/End: Original strand, 26530568 - 26530704
Alignment:
| Q |
225 |
atgttaccgaagatttagattccccttctaagtgcaatggaggtccagatgctaccgaaaatttaagttccccacctaaatgcaatggaggtcaagatgc |
324 |
Q |
| |
|
|||||| ||||||||||| ||||||| |||||||||||||||||| |||||||||| || ||||| ||| ||||||||| |||| ||||||| |||||| |
|
|
| T |
26530568 |
atgttatcgaagatttaggttcccctcctaagtgcaatggaggtctagatgctacccaagatttaggtttcccacctaagtgcattggaggttcagatgc |
26530667 |
T |
|
| Q |
325 |
taccgaagatttaggttcccctcctaagtgcaatggag |
362 |
Q |
| |
|
| |||||||||| |||| |||| |||||||||||||| |
|
|
| T |
26530668 |
tgccgaagatttgggtttccct-ataagtgcaatggag |
26530704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 234 - 362
Target Start/End: Original strand, 26530529 - 26530657
Alignment:
| Q |
234 |
aagatttagattccccttctaagtgcaatggaggtccagatgctaccgaaaatttaagttccccacctaaatgcaatggaggtcaagatgctaccgaaga |
333 |
Q |
| |
|
|||| ||| |||||||| ||||||| ||||| ||||| ||| || |||| ||||| ||||||| ||||| ||||||||||||| |||||||||| |||| |
|
|
| T |
26530529 |
aagacttacattcccctcctaagtgtgatggaagtccaaatgttatcgaagatttaggttcccctcctaagtgcaatggaggtctagatgctacccaaga |
26530628 |
T |
|
| Q |
334 |
tttaggttcccctcctaagtgcaatggag |
362 |
Q |
| |
|
|||||||| ||| |||||||||| ||||| |
|
|
| T |
26530629 |
tttaggtttcccacctaagtgcattggag |
26530657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 223 - 374
Target Start/End: Original strand, 26530470 - 26530621
Alignment:
| Q |
223 |
agatgttaccgaagatttagattccccttctaagtgcaatggaggtccagatgctaccgaaaatttaagttccccacctaaatgcaatggaggtcaagat |
322 |
Q |
| |
|
||||| ||||||||||||| ||||| |||||||||||||||||||| |||||| || | ||| |||||| ||||| || ||||| ||| | || |
|
|
| T |
26530470 |
agatgctaccgaagatttaagttccctacctaagtgcaatggaggtccaaatgctattaaagacttacattcccctcctaagtgtgatggaagtccaaat |
26530569 |
T |
|
| Q |
323 |
gctaccgaagatttaggttcccctcctaagtgcaatggagatctagatgcta |
374 |
Q |
| |
|
| || ||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
26530570 |
gttatcgaagatttaggttcccctcctaagtgcaatggaggtctagatgcta |
26530621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 26525807 - 26525986
Alignment:
| Q |
1 |
gcatccagtcacagagcttcatgaagtttgtcaaaagaaaagtctcaagttacaattcagagatttgtggaaagagactatgagagttgaagtccttata |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||||||| | || |||||||| ||| |||||| || | | |||| |||| ||| | || |
|
|
| T |
26525807 |
gcatcccgtcacagagcttcatgaagtttgtcagaagaaaaaatttaatttacaatttgtagacttgtgggaaaaatcaatgaacattgatgtcttcatc |
26525906 |
T |
|
| Q |
101 |
aatgaggagtttgttggaagtggtgtttatggctctaagaaagaaattgcacacaatagggcagcaaaaaatgctttgga |
180 |
Q |
| |
|
|||||| | ||||||||||| || |||||||||||||||||| |||| ||| |||| || ||||||||||||||||| |
|
|
| T |
26525907 |
aatgagaaatttgttggaagaggcacttatggctctaagaaagacattgtacattatagagctgcaaaaaatgctttgga |
26525986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 319 - 505
Target Start/End: Original strand, 26530470 - 26530665
Alignment:
| Q |
319 |
agatgctaccgaagatttaggttcccctcctaagtgcaatggagatctagatgctattgaaggtt---------cgccaaagtgcaatggaggcccacat |
409 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||||||||| || | |||||||| ||| | | || ||||| ||||| | ||| || |
|
|
| T |
26530470 |
agatgctaccgaagatttaagttccctacctaagtgcaatggaggtccaaatgctattaaagacttacattcccctcctaagtgtgatggaagtccaaat |
26530569 |
T |
|
| Q |
410 |
gttaccgaagatttaggtttccttcctaaatgcaatggagatccagatgctattagagatttaggttccccaactaaatgcaatggaggttgagat |
505 |
Q |
| |
|
|||| |||||||||||||| || |||||| |||||||||| || |||||||| ||||||||||| |||| |||| |||| |||||||| |||| |
|
|
| T |
26530570 |
gttatcgaagatttaggttcccctcctaagtgcaatggaggtctagatgctacccaagatttaggtttcccacctaagtgcattggaggttcagat |
26530665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University