View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21385_low_8 (Length: 383)
Name: NF21385_low_8
Description: NF21385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21385_low_8 |
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| [»] scaffold0831 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 44187393 - 44187755
Alignment:
| Q |
1 |
attaccgtcataattataacacatttttctatggccatagtgttggcatctttgttgaactgttatacatttaagnnnnnnngtggtataattgtattcg |
100 |
Q |
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| T |
44187393 |
attaccgtcataattataacacacttttctatggccatagt-------------ttgaactgttatacatttaagaaaaaaagtggtataattgtattca |
44187479 |
T |
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| Q |
101 |
cttgcaacaatttttacataaacatattattcttgacaaccatatagttactcatattatgaaaattggataaatgacaacggactagactgttttgatt |
200 |
Q |
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| T |
44187480 |
cttgcaacaatttttacataaacatattattcttgacaaccatatagttactcatattatgaaatttggataaatgacaacggactagactgttttgatt |
44187579 |
T |
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| Q |
201 |
taaatgcccaaacaattgaagatatgggtgttaaaggcgagcctttctgttgggaggtggcaatttgtnnnnnnnnntattattcctgttggctgaatta |
300 |
Q |
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| T |
44187580 |
taaatgcccaaacaattgaagatatgggtgttaaaggcgagcctttctgttgtgaggtggcaatttgt-aaaaaaaatcttattcctgttggctgaatta |
44187678 |
T |
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| Q |
301 |
agaattagttgtacttgcattccaagtttaaagctttcacccaagagggttatggatatactgttataattgatgat |
377 |
Q |
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| T |
44187679 |
agaattagttgtacttgcattccaagtttaaagctttcacccaagagggttatggatatactgttataatttatgat |
44187755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 83 - 339
Target Start/End: Original strand, 1328798 - 1329053
Alignment:
| Q |
83 |
gtggtataattgtattcgcttgcaacaatttttacataaacatattattcttgacaaccatatagttactcatattatgaaaattggataaatgacaacg |
182 |
Q |
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| T |
1328798 |
gtggtataattgtattcacctgcataaatgtttacataaacatattattcttgacaatcatacagtcactcgttatatggaatttggataaatgacaatg |
1328897 |
T |
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| Q |
183 |
gactagactgttttgatttaaatgcccaaacaattgaagatatgggtgttaaaggcgagcctttctgttgggaggtggcaatttgtnnnnnnnnntatta |
282 |
Q |
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| T |
1328898 |
gattagcctgttttgatttaaatacccaaataattgaaggtatgggtgttaaaggtgagtctttctgttgtgaggtcgcaatttat-aagaaaaatcttc |
1328996 |
T |
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| Q |
283 |
ttcctgttggctgaattaagaattagttgtacttgcattccaagtttaaagctttca |
339 |
Q |
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| T |
1328997 |
ttccaattggccgaattaagaattagttgtatttggatcccaagtttaaagctttca |
1329053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 1328674 - 1328730
Alignment:
| Q |
9 |
cataattataacacatttt-tctatggccatagtgttggcatctttgttgaactgtt |
64 |
Q |
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| T |
1328674 |
cataattataacacattttttctatggccatagtgttggcatctttgttgaactgtt |
1328730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 191 - 246
Target Start/End: Original strand, 1327414 - 1327469
Alignment:
| Q |
191 |
tgttttgatttaaatgcccaaacaattgaagatatgggtgttaaaggcgagccttt |
246 |
Q |
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| T |
1327414 |
tgttttgatttaaatacccaaacaattgaagatttgggtgttaaaggggagccttt |
1327469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 237
Target Start/End: Original strand, 44186261 - 44186307
Alignment:
| Q |
191 |
tgttttgatttaaatgcccaaacaattgaagatatgggtgttaaagg |
237 |
Q |
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| T |
44186261 |
tgttttgatttaaatactcaaacaattgaagatctgggtgttaaagg |
44186307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0831 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0831
Description:
Target: scaffold0831; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 236
Target Start/End: Complemental strand, 1236 - 1191
Alignment:
| Q |
191 |
tgttttgatttaaatgcccaaacaattgaagatatgggtgttaaag |
236 |
Q |
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| T |
1236 |
tgttttgacttaattacccaaacaattgaagatttgggtgttaaag |
1191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 232
Target Start/End: Original strand, 6432741 - 6432789
Alignment:
| Q |
184 |
actagactgttttgatttaaatgcccaaacaattgaagatatgggtgtt |
232 |
Q |
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| T |
6432741 |
actagtctgttttgatttaaacacccaaacaattgaaaatttgggtgtt |
6432789 |
T |
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