View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21385_low_9 (Length: 365)
Name: NF21385_low_9
Description: NF21385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21385_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 4 - 346
Target Start/End: Original strand, 15329470 - 15329812
Alignment:
| Q |
4 |
ggcgctaaagagctggagagtagaatattaaacgagaaggatgaggcaggaaacactattttacacattgcagcactaagtagtgaaccactggtagtgc |
103 |
Q |
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||||||||||||| | ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15329470 |
ggcgctaaagagcggaagagtagaatattaaacgagagggatgaggcaggaaacacaattttacacattgcagcactaagtagtgaaccactggtagtgc |
15329569 |
T |
|
| Q |
104 |
aggagcttctatcgttggtaaagactaaaatatatttgcacagaaagaatttggagaataaaacagcattggacatagcaagcattccagagatcaagag |
203 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15329570 |
aggagcttctatcgttggtaaagactaaaataaatttgcacaaaaagaatttggagaataaaacagcattggacatagcaagcattccagagatcaagag |
15329669 |
T |
|
| Q |
204 |
tatattattcagtgctggatcaaaaccaagcttagaagtcatatatgctccctcacctgcacattggcttaggtcaaagaccacacttatgtataaattc |
303 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
15329670 |
tatattattcagtgctgggtcaaaaccaagcttagaagtcacagatgctccctcacctacacattggcttaggtcaaagaccacacttatggataaattc |
15329769 |
T |
|
| Q |
304 |
tacactcatatctttcgtggtagaactgacataacaggggagg |
346 |
Q |
| |
|
| | |||| | | || | |||||||| ||||||||||||||| |
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| T |
15329770 |
ttctctcagaacctttttagtagaactaacataacaggggagg |
15329812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 4 - 346
Target Start/End: Original strand, 15509839 - 15510181
Alignment:
| Q |
4 |
ggcgctaaagagctggagagtagaatattaaacgagaaggatgaggcaggaaacactattttacacattgcagcactaagtagtgaaccactggtagtgc |
103 |
Q |
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||||||||||||| | ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15509839 |
ggcgctaaagagcggaagagtagaatattaaacgagagggatgaggcaggaaacacaattttacacattgcagcactaagtagtgaaccactggtagtgc |
15509938 |
T |
|
| Q |
104 |
aggagcttctatcgttggtaaagactaaaatatatttgcacagaaagaatttggagaataaaacagcattggacatagcaagcattccagagatcaagag |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15509939 |
aggagcttctatcgttggtaaagactaaaataaatttgcacaaaaagaatttggagaataaaacagcattggacatagcaagcattccagagatcaagag |
15510038 |
T |
|
| Q |
204 |
tatattattcagtgctggatcaaaaccaagcttagaagtcatatatgctccctcacctgcacattggcttaggtcaaagaccacacttatgtataaattc |
303 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
15510039 |
tatattattcagtgctgggtcaaaaccaagcttagaagtcacagatgctccctcacctacacattggcttaggtcaaagaccacacttatggataaattc |
15510138 |
T |
|
| Q |
304 |
tacactcatatctttcgtggtagaactgacataacaggggagg |
346 |
Q |
| |
|
| | |||| | | || | |||||||| ||||||||||||||| |
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|
| T |
15510139 |
ttctctcagaacctttttagtagaactaacataacaggggagg |
15510181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 28865564 - 28865906
Alignment:
| Q |
1 |
agtggcgctaaagagctggagagtagaatattaaacgagaaggatgaggcaggaaacactattttacacattgcagcactaagtagtgaaccactggtag |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
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| T |
28865564 |
agtggcgctgaagagctggagagtagaatattaaacgagaaggatgaggcaggaaacagtattttacatgttgcagcactaagtagtgaaccactggtag |
28865663 |
T |
|
| Q |
101 |
tgcaggagcttctatcgttggtaaagactaaaatatatttgcacagaaagaatttggagaataaaacagcattggacatagcaagcattccagagatcaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
28865664 |
tgcaggagcttctatcgttggtaaagactaaaataaatttgcgcaaaaagaatttggagaataaaacagcattggacatagcaagcattccagagattaa |
28865763 |
T |
|
| Q |
201 |
gagtatattattcagtgctggatcaaaaccaagcttagaagtcatatatgctccctcacctgcacattggcttaggtcaaagaccacacttatgtataaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||| |||||||||||||||||||||||||||| || || ||||| |
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|
| T |
28865764 |
gagtatattattcagtgctggatcaaaaccaagcttagaagtcacagatgctcccacacgtgcacattggcttaggtcaaagaccacaattttggataaa |
28865863 |
T |
|
| Q |
301 |
ttctacactcatatctttcgtggtagaactgacataacaggggagg |
346 |
Q |
| |
|
||||||||||| | | ||| |||||||||||||||||||||||| |
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|
| T |
28865864 |
ttctacactcagaaccttc---gtagaactgacataacaggggagg |
28865906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 147 - 243
Target Start/End: Original strand, 14727509 - 14727605
Alignment:
| Q |
147 |
aaagaatttggagaataaaacagcattggacatagcaagcattccagagatcaagagtatattattcagtgctggatcaaaaccaagcttagaagtc |
243 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||| |||||| |||||||| |||||||||||||| |||| |||| |||||| ||| |||||||| |
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|
| T |
14727509 |
aaagaatttggagaacaaaacagcattagacataacaagcaccccagagatgaagagtatattattaagtgttggagcaaaacatagcatagaagtc |
14727605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 157 - 244
Target Start/End: Original strand, 30648656 - 30648743
Alignment:
| Q |
157 |
gagaataaaacagcattggacatagcaagcattccagagatcaagagtatattattcagtgctggatcaaaaccaagcttagaagtca |
244 |
Q |
| |
|
||||| ||||| ||||| ||||||||||||| ||||||||||||||||||||||| |||| |||| ||||||| |||| |||||||| |
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| T |
30648656 |
gagaacaaaaccgcattagacatagcaagcacgccagagatcaagagtatattattaagtgttggaacaaaacctagctcagaagtca |
30648743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 240
Target Start/End: Original strand, 26089009 - 26089102
Alignment:
| Q |
147 |
aaagaatttggagaataaaacagcattggacatagcaagcattccagagatcaagagtatattattcagtgctggatcaaaaccaagcttagaa |
240 |
Q |
| |
|
||||||| ||||||| ||||| ||||| ||||||||||||| |||||| | |||||||||||||| ||| |||| ||||||| ||| ||||| |
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|
| T |
26089009 |
aaagaatctggagaacaaaaccgcattagacatagcaagcactccagatgtgaagagtatattattaagttttggagcaaaacctagcatagaa |
26089102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 230
Target Start/End: Complemental strand, 31073922 - 31073809
Alignment:
| Q |
117 |
gttggtaaagactaaaatatatttgcacagaaagaatttggagaataaaacagcattggacatagcaagcattccagagatcaagagtatattattcagt |
216 |
Q |
| |
|
||||||||||||||| ||| ||||| | |||||||| ||||| |||| |||| ||||||||| || | ||||||||||| |||||||| | ||| |
|
|
| T |
31073922 |
gttggtaaagactaagataaatttgaatgcaaagaattcagagaactcaacaacattagacatagcagccagtgcagagatcaagggtatattactaagt |
31073823 |
T |
|
| Q |
217 |
gctggatcaaaacc |
230 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
31073822 |
gctggagcaaaacc |
31073809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 7e-28; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 117 - 244
Target Start/End: Complemental strand, 6611221 - 6611094
Alignment:
| Q |
117 |
gttggtaaagactaaaatatatttgcacagaaagaatttggagaataaaacagcattggacatagcaagcattccagagatcaagagtatattattcagt |
216 |
Q |
| |
|
||||||||||||||||||| ||||| ||| || ||| ||||||| ||||||||||| ||||||||||||| |||| |||||||||||| |||||||| |
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|
| T |
6611221 |
gttggtaaagactaaaataaatttgaacacaatgaacttggagagcaaaacagcattagacatagcaagcactccacggatcaagagtatgttattcaga |
6611122 |
T |
|
| Q |
217 |
gctggatcaaaaccaagcttagaagtca |
244 |
Q |
| |
|
| |||| ||||||| ||||||||||||| |
|
|
| T |
6611121 |
gttggagcaaaacctagcttagaagtca |
6611094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 148 - 287
Target Start/End: Complemental strand, 17292958 - 17292819
Alignment:
| Q |
148 |
aagaatttggagaataaaacagcattggacatagcaagcattccagagatcaagagtatattattcagtgctggatcaaaaccaagcttagaagtcatat |
247 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||| || || || ||||| ||||||||| ||||| ||||||||||||||||| |||||||||||||| |
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|
| T |
17292958 |
aagaatttggagaacaaaacagcattagacattgccgccactctagagaacaagagtatcttatttagtgctggatcaaaacctagcttagaagtcatgg |
17292859 |
T |
|
| Q |
248 |
atgctccctcacctgcacattggcttaggtcaaagaccac |
287 |
Q |
| |
|
|||||||| ||| ||||||| || || ||||||||||| |
|
|
| T |
17292858 |
atgctcccacacttgcacataaactaagatcaaagaccac |
17292819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 85
Target Start/End: Complemental strand, 6612008 - 6611950
Alignment:
| Q |
27 |
aatattaaacgagaaggatgaggcaggaaacactattttacacattgcagcactaagta |
85 |
Q |
| |
|
|||||||||| ||| |||||||||||| ||||| ||||| || ||| |||||||||||| |
|
|
| T |
6612008 |
aatattaaacaagagggatgaggcaggcaacaccattttgcatatttcagcactaagta |
6611950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 147 - 302
Target Start/End: Complemental strand, 26086740 - 26086585
Alignment:
| Q |
147 |
aaagaatttggagaataaaacagcattggacatagcaagcattccagagatcaagagtatattattcagtgctggatcaaaaccaagcttagaagtcata |
246 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||||| |||| ||||||||||||||||||| || || ||| ||||| | ||| | |||||| |
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|
| T |
26086740 |
aaagaatttggagaacaaaacagcattagacatagcaagcactccaaagatcaagagtatattattaagggcaggagcaaaatctagcatggaagtcgct |
26086641 |
T |
|
| Q |
247 |
tatgctccctcacctgcacattggcttaggtcaaagaccacacttatgtataaatt |
302 |
Q |
| |
|
|||||||| ||| ||||||| ||| ||||| |||| ||| |||||||||||| |
|
|
| T |
26086640 |
gatgctcccacacttgcacatatgctaaggtcgaagaaaacaactatgtataaatt |
26086585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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