View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21386_high_2 (Length: 259)
Name: NF21386_high_2
Description: NF21386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21386_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 25 - 243
Target Start/End: Original strand, 48892912 - 48893133
Alignment:
| Q |
25 |
gtgtcagaaaaaggacacacaaatccgagtagtgctcatg---gtatttgataaaattaaaagacaatgaaggaataaagaaattaaattaccagctctt |
121 |
Q |
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| T |
48892912 |
gtgtcagacacaggacacacaaatccgagtagtgttcgtgattgtaattgataaaattaaaagacaattaaggaataaagaaattaaattaccagctctt |
48893011 |
T |
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| Q |
122 |
tttggaagtgatctccattggccttctccatgagcttgaatatatttggtgagcaatgcatcttcacgagaagtccatggacctctatgcaacccaactt |
221 |
Q |
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| T |
48893012 |
tttggaagtgatctccattggccttctccatgagcttgaatatatttggtgagcaatgcatcttcacgagaagtccatggacctctatgcaacccaactt |
48893111 |
T |
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| Q |
222 |
ttgaacaacaaggagttcttcc |
243 |
Q |
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| T |
48893112 |
ttgaacaacaaggagttcttcc |
48893133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 110 - 243
Target Start/End: Complemental strand, 9621484 - 9621351
Alignment:
| Q |
110 |
ttaccagctctttttggaagtgatctccattggccttctccatgagcttgaatatatttggtgagcaatgcatcttcacgagaagtccatggacctctat |
209 |
Q |
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| T |
9621484 |
ttaccagcttttttaggaagtgatttccattggccttcaccatgagcttgaacatattttgtaagcaatgcatcttctttagtagtccatggacccttgt |
9621385 |
T |
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| Q |
210 |
gcaacccaacttttgaacaacaaggagttcttcc |
243 |
Q |
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| T |
9621384 |
gcaatccaactttggcacaacaaggagctcttcc |
9621351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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