View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21386_low_2 (Length: 726)
Name: NF21386_low_2
Description: NF21386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21386_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-138; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 365 - 670
Target Start/End: Complemental strand, 41332437 - 41332133
Alignment:
| Q |
365 |
tttgtaagcataaaccttcatttaatattatagtgctttttctttaggttgtatatttcagtaaatatgttttcttctgtctctctcatttttgtatttt |
464 |
Q |
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| T |
41332437 |
tttgttagcataaaccttcatttaatattatagtgctttttctttaggttgtatatttcagtaaatatgttttcttctgtctcttccatttttgtatttt |
41332338 |
T |
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| Q |
465 |
cttgcacttttatgtattgtaaatgctaacgaaatgttgtgaggacattcaaactctttgaataggtaacttttatgaatatttatgtaattattgtatt |
564 |
Q |
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| T |
41332337 |
cttgcacttttatgtattgtaaatgctaacgaaatgttctgaggacattcaaaccctttgaataggtaacttttatgaatatttatgtaattattgtatt |
41332238 |
T |
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| Q |
565 |
annnnnnnngaagtaattgtgtaattattgtattgtaaattgaaatatttgaattttaaaatctttaaagatgtttggaacattcattaacaagattgtt |
664 |
Q |
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| T |
41332237 |
attttttttgaagtaattgtgtaattattgtattgtaaattgaaatatttgaattttaaaatctttaaagatgtttggaacattcatt-ataagattgtt |
41332139 |
T |
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| Q |
665 |
tatgta |
670 |
Q |
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| T |
41332138 |
tatgta |
41332133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 41332810 - 41332535
Alignment:
| Q |
1 |
tacttctaagattgcaccccnnnnnnnngattacacattagttggttgtgaattattgacggtataaaactcttatcggaaccatgtatcaaaatttaac |
100 |
Q |
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| T |
41332810 |
tacttctaagattgcaccccaaaaaaaagattacacattagttggttgtgaattattgacggtataaaactcttatcggaaccatgtatcaaaattaaac |
41332711 |
T |
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| Q |
101 |
ttctaaaattgaatacctaaaactatttttgccaaatggagtaatgtatcacaggatatttgttttctacgtaaactaagttgaatttcagaattttttc |
200 |
Q |
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| T |
41332710 |
ttctaaaattgaatacctaaaactatttttgccaaatggagtaatgtatcacaggatatttgttttctacgtaaactaagttgaatttcagaattttttc |
41332611 |
T |
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| Q |
201 |
ttaagaattgaaacgagtttgtattcatttaaaggaaatgatagcaagtgttcttggaacacttctaaatgaattg |
276 |
Q |
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| T |
41332610 |
ttaagaattgaaacgagtttgtattcatttaaaggaaatgatagcaagtgttcttggaacacttctaaatgaattg |
41332535 |
T |
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