View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21386_low_3 (Length: 596)
Name: NF21386_low_3
Description: NF21386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21386_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 436
Target Start/End: Complemental strand, 2265267 - 2264852
Alignment:
| Q |
1 |
ttattttgacattttagagacatgttattttgtcatataagctttatgaaaagattgatttatagaaactatacaatgcaacaggtggaatttgatagca |
100 |
Q |
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| T |
2265267 |
ttattttgacattttagagacatgttattttgtcatataagctttatgaaaagattgatttatagaaactatacaatgcaacaggtggaatttgatagca |
2265168 |
T |
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| Q |
101 |
ggtcgcattccaggtcgtaaagcagaagaaatagagagattctggattatgagacacactgatgctttttctgccaaaagaaagaagtgaacataaagca |
200 |
Q |
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| T |
2265167 |
ggtcgcattccaggtcgtaaagcagaagaaatagagagattctggattatgagacacactgatgctttttctgccaaaagaaagaagtgaacataaagca |
2265068 |
T |
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| Q |
201 |
aattaaattaagactctttattttgtttgttcaattatatctctctcctaggcataattattctagcatataaactttgttttggattttaaagaattat |
300 |
Q |
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| T |
2265067 |
aattaaattaagactctttattttgtttgttcaattatatctctctcctaggcataattattctagcata-------------------taaagaattat |
2264987 |
T |
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| Q |
301 |
ttgtattgcttctcgttgaaggtttgacacttccattccatgtctcaagcaaagctttatatgaaaacagattttgtattttgcatagtttaagttaatt |
400 |
Q |
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| T |
2264986 |
ttgtattgcttctcgttgaaggtttgacacttccattccatgtctcaagc-aagctttatatgaaaggagattttgtattttgcatagtttaagttaatt |
2264888 |
T |
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| Q |
401 |
taattaattagtttgactgtttgattttcctttagt |
436 |
Q |
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| T |
2264887 |
taattaattagtttgactgtttgattttcctttagt |
2264852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 431 - 501
Target Start/End: Original strand, 2265374 - 2265444
Alignment:
| Q |
431 |
tttagtatatcaaacacacctttttccttcacgggtttctaattagttctaataacttggtcttttggtat |
501 |
Q |
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| T |
2265374 |
tttagtatatcaaacacacctttttccttcacgggtttctaattagttctaataacttgatcttttagtat |
2265444 |
T |
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