View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21387_low_3 (Length: 401)
Name: NF21387_low_3
Description: NF21387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21387_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 14 - 383
Target Start/End: Complemental strand, 13854007 - 13853638
Alignment:
| Q |
14 |
gaactatggagagaagtacgagaattaagtttaggaagcaaaagaaccatagaacgtttagaatctccaccaacactccaatttcaggatagcttatgaa |
113 |
Q |
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| T |
13854007 |
gaactatggagagaagtacgagaattaagtttaggaagcaacagaaccatagaacgtttagaatctccaccaacactccaatttcaggatagcttatgaa |
13853908 |
T |
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| Q |
114 |
aagaacatagagcttaaataaagacagtttgattttacttgacgttttgtcacacataagtacttatatgataagcgtcaatgctataagtgtcgagtta |
213 |
Q |
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| T |
13853907 |
aagaacatagagcttaaataaagacagtttgattttacttgacgttttgttatacataagtacttatatgataagcgtcaatgctataagtgtcgagtta |
13853808 |
T |
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| Q |
214 |
agttctttatgcaaataaggtcactgccaaaggttttagcttttggaattgaatccaattggggtgttgtggatatannnnnnnnnngtaggatactgga |
313 |
Q |
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| T |
13853807 |
agttctttatgcaaacaaggtcactgccaaaggttttagcttttggaattgaatccatttggggtgttgtggatatatatattttttgtaggatactgga |
13853708 |
T |
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| Q |
314 |
gagtttgatttggaacttgagaagccgactaggtatttccttctccggagaacttggaggatgagatttc |
383 |
Q |
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| T |
13853707 |
gagtttgatttggaacttgagaagccgactaggtatttccttctccggagaacttggaggatgagatttc |
13853638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 10219284 - 10219359
Alignment:
| Q |
14 |
gaactatggagagaagtacgagaattaagtttaggaagcaaaagaaccatagaacgtttagaatctccaccaacac |
89 |
Q |
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| T |
10219284 |
gaactatggagagaagtacgagaattaagtctaggaagcaaaagaagcatagaacgtttagaatcagcaccaacac |
10219359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 301 - 349
Target Start/End: Original strand, 10220227 - 10220275
Alignment:
| Q |
301 |
gtaggatactggagagtttgatttggaacttgagaagccgactaggtat |
349 |
Q |
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| T |
10220227 |
gtaggaaactggagagtttgatttggaacttgacaagccaactaggtat |
10220275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 383
Target Start/End: Original strand, 10220300 - 10220334
Alignment:
| Q |
349 |
tttccttctccggagaacttggaggatgagatttc |
383 |
Q |
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| T |
10220300 |
tttccttctccggagaacttggaggacgagatttc |
10220334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 205
Target Start/End: Complemental strand, 24193529 - 24193491
Alignment:
| Q |
167 |
acataagtacttatatgataagcgtcaatgctataagtg |
205 |
Q |
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| T |
24193529 |
acataagtacttatatgataagcgtttatgctataagtg |
24193491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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