View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21387_low_5 (Length: 266)
Name: NF21387_low_5
Description: NF21387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21387_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 16 - 217
Target Start/End: Complemental strand, 51274120 - 51273919
Alignment:
| Q |
16 |
gaacctgtgatggttgaaagatactttctttgtgctttctccgatgctataataaggttcacaaacaaggccttcgagtacacggtcacgtttattgtga |
115 |
Q |
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| T |
51274120 |
gaacctgtgatggttgaaagatactttctttgtgctttctccgatgctataataaggttcacaaacaaagccttctagtacacggtcacgtttattgtga |
51274021 |
T |
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| Q |
116 |
ccggttcccggcggtggagggagtggaagtttgatccaatcttttgtgaggatgttgcatacatggtagactctaccacgtgtggttttcttgcagagaa |
215 |
Q |
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| T |
51274020 |
ccggttcccggcggtggagggagtggaagtttgatccaatcttttgtgaggatgttgcatacatggtagactctaccacgtgtggttttcttgcagagaa |
51273921 |
T |
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| Q |
216 |
ac |
217 |
Q |
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|| |
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| T |
51273920 |
ac |
51273919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 71 - 217
Target Start/End: Complemental strand, 14908094 - 14907948
Alignment:
| Q |
71 |
ggttcacaaacaaggccttcgagtacacggtcacgtttattgtgaccggttcccggcggtggagggagtggaagtttgatccaatcttttgtgaggatgt |
170 |
Q |
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| T |
14908094 |
ggttcgcaaacaaagccttcatgtacacggtcacgctcattatgactggttcgtagcggtggagggagtggaaatttgatcctatcttttgtgaggatgt |
14907995 |
T |
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| Q |
171 |
tgcatacatggtagactctaccacgtgtggttttcttgcagagaaac |
217 |
Q |
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| T |
14907994 |
tgcagacatggtagactctactacgtgtggttttcttgcacagaaac |
14907948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 170
Target Start/End: Original strand, 5051299 - 5051458
Alignment:
| Q |
16 |
gaacctgtgatggttgaaagatactttctttgtgctttctccgatgctataa-----taaggttcacaaacaaggccttcgagtacacggtcacgttta- |
109 |
Q |
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||||||||||||||||||||||||||| |||||| || | | ||||||||| |||||||| ||||| | ||||||||||||||||||||||||| |
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| T |
5051299 |
gaacctgtgatggttgaaagatacttt-tttgtgtttccatcaatgctataaaataataaggttcgcaaacgaagccttcgagtacacggtcacgtttat |
5051397 |
T |
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| Q |
110 |
ttgtgaccggttcccggcggtggagggagtggaagtttgatccaatcttttgtgaggatgt |
170 |
Q |
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|| ||||||||| || || |||||||||||||||||||||||||||||| | |||||||| |
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| T |
5051398 |
ttctgaccggtttccagctatggagggagtggaagtttgatccaatctttcgcgaggatgt |
5051458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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