View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21387_low_6 (Length: 221)
Name: NF21387_low_6
Description: NF21387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21387_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 20 - 206
Target Start/End: Original strand, 1689156 - 1689356
Alignment:
| Q |
20 |
aaaacggtcataaatacttgtgctggcatcgtttttgagtgaaaattgaaccattggaaaatagacaaaatttaacatgaaataggctctggaagaactt |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
1689156 |
aaaacggtcataaatacttgtgctggcatcgtttttgagtgaaaattgaaccattggaaaatagacaaaatttaacacgaaataggctctggaagcactt |
1689255 |
T |
|
| Q |
120 |
aattt--------------tgagaaaattgagttagaagtttgagctgctgaagtaaaaatctgaactgttgttgttggaatgttctatcatatctctct |
205 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
1689256 |
aattttgttattctatgactgagaaaattgagttagaagtttgagctgctgaagtaaaaatctgaactgttgttgttggaatgttctgtcatatctatct |
1689355 |
T |
|
| Q |
206 |
g |
206 |
Q |
| |
|
| |
|
|
| T |
1689356 |
g |
1689356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 20 - 206
Target Start/End: Original strand, 5479181 - 5479381
Alignment:
| Q |
20 |
aaaacggtcataaatacttgtgctggcatcgtttttgagtgaaaattgaaccattggaaaatagacaaaatttaacatgaaataggctctggaagaactt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
5479181 |
aaaacggtcataaatacttgtgctggcatcatttttgagtgaaaattgaaccattggaaaatagacaaaatttaacacgaaataggctctggaagaactt |
5479280 |
T |
|
| Q |
120 |
aattt--------------tgagaaaattgagttagaagtttgagctgctgaagtaaaaatctgaactgttgttgttggaatgttctatcatatctctct |
205 |
Q |
| |
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||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
5479281 |
aattttgttattctatgactgagaaaattgagttagaagtttgaactgccgaagtaaaaatctgaactgttgttgttggaatgttctgtcatatctctct |
5479380 |
T |
|
| Q |
206 |
g |
206 |
Q |
| |
|
| |
|
|
| T |
5479381 |
g |
5479381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 134; Significance: 6e-70; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 20 - 206
Target Start/End: Complemental strand, 45007556 - 45007356
Alignment:
| Q |
20 |
aaaacggtcataaatacttgtgctggcatcgtttttgagtgaaaattgaaccattggaaaatagacaaaatttaacatgaaataggctctggaagaactt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
45007556 |
aaaacggtcataaatacttgtgctggcatcatttttgagtgaaaattgaaccattggaaaatagacaaaatttaacacgaaataggctctggaagaactt |
45007457 |
T |
|
| Q |
120 |
aattt--------------tgagaaaattgagttagaagtttgagctgctgaagtaaaaatctgaactgttgttgttggaatgttctatcatatctctct |
205 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
45007456 |
aattttgttattctatgactgagaaaattgagttagaagtttgaactgccgaagtaaaaatctgaactgttgttgttggaatgttctgtcatatctctct |
45007357 |
T |
|
| Q |
206 |
g |
206 |
Q |
| |
|
| |
|
|
| T |
45007356 |
g |
45007356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 20 - 206
Target Start/End: Complemental strand, 2684131 - 2683931
Alignment:
| Q |
20 |
aaaacggtcataaatacttgtgctggcatcgtttttgagtgaaaattgaaccattggaaaatagacaaaatttaacatgaaataggctctggaagaactt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2684131 |
aaaacggtcataaatacttgtgctggcatcatttttgagtgaaaattgaaccattggaaaatagacaaaatttaacacgaaataggctctggaagaactt |
2684032 |
T |
|
| Q |
120 |
aattt--------------tgagaaaattgagttagaagtttgagctgctgaagtaaaaatctgaactgttgttgttggaatgttctatcatatctctct |
205 |
Q |
| |
|
||||| ||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
2684031 |
aattttgttattctatgactgagaaaattgagttagaagtttgaactaccgaagtaaaaatctgaactgttgttgttggaatgttctgtcatatctctct |
2683932 |
T |
|
| Q |
206 |
g |
206 |
Q |
| |
|
| |
|
|
| T |
2683931 |
g |
2683931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 47 - 105
Target Start/End: Original strand, 31402567 - 31402625
Alignment:
| Q |
47 |
atcgtttttgagtgaaaattgaaccattggaaaatagacaaaatttaacatgaaatagg |
105 |
Q |
| |
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||||||||||| ||| | |||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
31402567 |
atcgtttttgaatgagacttgaaccattggaaaatagacaaaatttaacacgaaatagg |
31402625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 3736675 - 3736723
Alignment:
| Q |
65 |
ttgaaccattggaaaatagacaaaatttaacatgaaataggctctggaa |
113 |
Q |
| |
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|||||||||| |||| ||| |||||||||||||||||||||| ||||| |
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| T |
3736675 |
ttgaaccattagaaataagataaaatttaacatgaaataggctttggaa |
3736723 |
T |
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