View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21388_high_18 (Length: 214)

Name: NF21388_high_18
Description: NF21388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21388_high_18
NF21388_high_18
[»] chr6 (17 HSPs)
chr6 (48-211)||(6788979-6789142)
chr6 (46-211)||(1462725-1462893)
chr6 (49-179)||(10110658-10110788)
chr6 (53-171)||(3000915-3001033)
chr6 (53-171)||(31995655-31995773)
chr6 (49-198)||(16439344-16439480)
chr6 (48-205)||(31975065-31975209)
chr6 (125-205)||(31534482-31534562)
chr6 (126-198)||(24202756-24202828)
chr6 (123-205)||(28900206-28900287)
chr6 (50-182)||(32567610-32567734)
chr6 (53-115)||(7834997-7835059)
chr6 (125-205)||(2607576-2607656)
chr6 (107-198)||(28042039-28042127)
chr6 (49-106)||(31534419-31534476)
chr6 (42-98)||(2607670-2607726)
chr6 (49-105)||(24202836-24202892)
[»] chr1 (46 HSPs)
chr1 (49-211)||(4005966-4006128)
chr1 (46-211)||(41354040-41354204)
chr1 (48-211)||(9174489-9174652)
chr1 (49-211)||(18246882-18247044)
chr1 (49-211)||(51107801-51107963)
chr1 (49-210)||(5208613-5208774)
chr1 (49-211)||(8147962-8148110)
chr1 (49-211)||(11578454-11578602)
chr1 (47-205)||(49452357-49452515)
chr1 (49-205)||(3593882-3594038)
chr1 (47-211)||(1242635-1242783)
chr1 (49-194)||(33886292-33886437)
chr1 (49-194)||(33957815-33957960)
chr1 (120-211)||(26758235-26758325)
chr1 (49-194)||(30176888-30177032)
chr1 (47-198)||(50037951-50038101)
chr1 (49-205)||(47370882-47371024)
chr1 (46-205)||(25254187-25254332)
chr1 (49-147)||(7799103-7799201)
chr1 (107-198)||(42637520-42637610)
chr1 (49-211)||(19863531-19863692)
chr1 (120-205)||(28403319-28403405)
chr1 (60-198)||(32759389-32759528)
chr1 (49-102)||(26758317-26758370)
chr1 (107-194)||(34751036-34751123)
chr1 (42-211)||(48965822-48965977)
chr1 (107-171)||(34019651-34019715)
chr1 (47-115)||(34750989-34751057)
chr1 (107-198)||(15928244-15928335)
chr1 (125-205)||(42303770-42303852)
chr1 (49-115)||(49236319-49236385)
chr1 (107-205)||(49971048-49971146)
chr1 (108-185)||(43855065-43855142)
chr1 (49-205)||(27257570-27257713)
chr1 (107-205)||(52182665-52182763)
chr1 (132-205)||(35176657-35176730)
chr1 (61-107)||(15928322-15928368)
chr1 (49-115)||(34019694-34019760)
chr1 (54-107)||(2292585-2292638)
chr1 (54-107)||(3583311-3583364)
chr1 (142-198)||(226540-226596)
chr1 (120-171)||(1108972-1109022)
chr1 (65-107)||(51903579-51903621)
chr1 (49-102)||(1109014-1109067)
chr1 (125-170)||(49236382-49236427)
chr1 (162-198)||(46042522-46042558)
[»] scaffold0002 (1 HSPs)
scaffold0002 (49-211)||(16137-16299)
[»] chr8 (24 HSPs)
chr8 (46-211)||(19484812-19484976)
chr8 (48-205)||(6387199-6387356)
chr8 (49-195)||(26619927-26620072)
chr8 (50-191)||(27869074-27869215)
chr8 (49-205)||(8029166-8029309)
chr8 (50-205)||(27974266-27974421)
chr8 (50-205)||(28031535-28031690)
chr8 (49-205)||(42423851-42423994)
chr8 (46-205)||(41394509-41394655)
chr8 (48-205)||(24082835-24082977)
chr8 (107-208)||(4870523-4870624)
chr8 (49-205)||(18984976-18985119)
chr8 (120-196)||(33177259-33177335)
chr8 (126-205)||(12737459-12737539)
chr8 (136-198)||(27876479-27876541)
chr8 (136-198)||(28016660-28016722)
chr8 (107-211)||(12521764-12521867)
chr8 (46-196)||(3007128-3007266)
chr8 (50-107)||(12737396-12737453)
chr8 (49-102)||(33177214-33177267)
chr8 (50-107)||(44977472-44977529)
chr8 (125-186)||(35880028-35880089)
chr8 (53-153)||(7761210-7761310)
chr8 (107-147)||(41252723-41252763)
[»] chr3 (36 HSPs)
chr3 (49-211)||(8599554-8599716)
chr3 (46-211)||(49296713-49296877)
chr3 (51-205)||(7436859-7437013)
chr3 (53-211)||(22488419-22488569)
chr3 (49-205)||(33693914-33694070)
chr3 (49-194)||(9817992-9818136)
chr3 (49-194)||(27261896-27262041)
chr3 (49-194)||(47466818-47466962)
chr3 (47-205)||(49459011-49459171)
chr3 (50-207)||(53836561-53836704)
chr3 (47-205)||(43173539-43173684)
chr3 (130-205)||(4962090-4962165)
chr3 (46-198)||(30237895-30238047)
chr3 (107-194)||(40064798-40064884)
chr3 (107-194)||(53644796-53644882)
chr3 (107-205)||(24063942-24064039)
chr3 (48-205)||(25932051-25932207)
chr3 (63-163)||(32766605-32766705)
chr3 (50-205)||(25050210-25050352)
chr3 (107-182)||(27163017-27163092)
chr3 (107-194)||(37833345-37833431)
chr3 (107-194)||(49294253-49294339)
chr3 (107-205)||(1666526-1666624)
chr3 (143-210)||(1545261-1545328)
chr3 (141-198)||(9030497-9030554)
chr3 (62-115)||(37833410-37833463)
chr3 (50-115)||(45731341-45731406)
chr3 (46-115)||(40064863-40064928)
chr3 (49-107)||(4962024-4962081)
chr3 (50-107)||(7667463-7667520)
chr3 (66-107)||(24064026-24064067)
chr3 (125-205)||(21718141-21718220)
chr3 (48-88)||(53644750-53644790)
chr3 (107-158)||(45731311-45731362)
chr3 (53-107)||(21385811-21385865)
chr3 (84-158)||(29650840-29650914)
[»] chr7 (28 HSPs)
chr7 (49-211)||(4639219-4639380)
chr7 (49-206)||(37915398-37915555)
chr7 (50-195)||(5771484-5771628)
chr7 (94-211)||(14742050-14742166)
chr7 (49-194)||(21024590-21024735)
chr7 (48-205)||(43172721-43172878)
chr7 (53-171)||(35314076-35314194)
chr7 (52-194)||(37391892-37392033)
chr7 (49-194)||(38910998-38911142)
chr7 (47-205)||(42611163-42611308)
chr7 (107-198)||(1253887-1253978)
chr7 (53-128)||(14742184-14742259)
chr7 (46-171)||(34657174-34657298)
chr7 (107-194)||(14731756-14731843)
chr7 (107-205)||(21486782-21486880)
chr7 (107-205)||(33496775-33496873)
chr7 (125-205)||(27149330-27149410)
chr7 (53-171)||(6269107-6269224)
chr7 (135-205)||(16710167-16710237)
chr7 (135-205)||(17684403-17684473)
chr7 (49-205)||(23017629-23017772)
chr7 (108-205)||(26201210-26201307)
chr7 (45-92)||(16710230-16710277)
chr7 (45-92)||(17684466-17684513)
chr7 (160-198)||(31445995-31446033)
chr7 (107-196)||(31175167-31175256)
chr7 (94-128)||(14742158-14742192)
chr7 (46-111)||(31175239-31175303)
[»] chr5 (28 HSPs)
chr5 (48-211)||(37797458-37797620)
chr5 (53-211)||(28622512-28622669)
chr5 (48-211)||(7124227-7124377)
chr5 (49-211)||(5650129-5650278)
chr5 (53-194)||(25869313-25869454)
chr5 (49-147)||(32236888-32236986)
chr5 (49-205)||(35701869-35702012)
chr5 (50-205)||(29716216-29716358)
chr5 (107-198)||(31914021-31914112)
chr5 (125-196)||(3032758-3032829)
chr5 (107-193)||(33892307-33892393)
chr5 (128-205)||(4840884-4840961)
chr5 (60-181)||(36195679-36195800)
chr5 (107-171)||(34910160-34910224)
chr5 (111-198)||(16801227-16801314)
chr5 (53-147)||(16497276-16497370)
chr5 (125-205)||(16548590-16548670)
chr5 (108-171)||(2674555-2674618)
chr5 (48-111)||(21238202-21238265)
chr5 (107-194)||(21238248-21238334)
chr5 (59-113)||(36180222-36180276)
chr5 (51-115)||(34910203-34910267)
chr5 (126-205)||(29759259-29759337)
chr5 (48-107)||(29759343-29759402)
chr5 (49-88)||(33892262-33892301)
chr5 (49-115)||(2674509-2674575)
chr5 (54-92)||(31914114-31914152)
chr5 (107-205)||(36180143-36180241)
[»] chr2 (36 HSPs)
chr2 (53-211)||(18899248-18899405)
chr2 (51-205)||(18726919-18727073)
chr2 (132-211)||(15224635-15224714)
chr2 (48-171)||(13908629-13908752)
chr2 (49-195)||(35403912-35404059)
chr2 (45-205)||(42242444-42242591)
chr2 (49-205)||(31846479-31846622)
chr2 (107-194)||(45160654-45160740)
chr2 (128-205)||(38295088-38295165)
chr2 (105-205)||(24026417-24026517)
chr2 (50-165)||(30851383-30851498)
chr2 (133-211)||(43304659-43304737)
chr2 (49-198)||(28546333-28546481)
chr2 (125-205)||(40830277-40830357)
chr2 (47-114)||(33263482-33263549)
chr2 (54-115)||(38411938-38411999)
chr2 (107-175)||(9731626-9731694)
chr2 (125-205)||(34342890-34342969)
chr2 (65-107)||(32241815-32241857)
chr2 (100-205)||(37790332-37790435)
chr2 (49-102)||(12520314-12520367)
chr2 (108-194)||(41979360-41979448)
chr2 (107-147)||(38411978-38412018)
chr2 (140-203)||(37810300-37810363)
chr2 (126-196)||(2104286-2104356)
chr2 (54-107)||(9731681-9731734)
chr2 (50-115)||(32643924-32643989)
chr2 (61-106)||(34342975-34343020)
chr2 (54-105)||(40830364-40830415)
chr2 (41-107)||(2307860-2307926)
chr2 (47-92)||(41979451-41979496)
chr2 (125-197)||(3857923-3857995)
chr2 (107-147)||(13327677-13327717)
chr2 (107-147)||(33263462-33263502)
chr2 (140-196)||(38147429-38147485)
chr2 (47-103)||(45160607-45160663)
[»] chr4 (47 HSPs)
chr4 (50-211)||(8084790-8084950)
chr4 (49-206)||(42936922-42937079)
chr4 (107-211)||(29469762-29469865)
chr4 (46-211)||(23670914-23671066)
chr4 (49-205)||(41206719-41206874)
chr4 (45-205)||(53573636-53573796)
chr4 (48-171)||(54561780-54561902)
chr4 (54-205)||(872138-872289)
chr4 (49-182)||(4511358-4511491)
chr4 (53-170)||(29965839-29965956)
chr4 (49-205)||(24965804-24965946)
chr4 (49-205)||(29509374-29509517)
chr4 (107-204)||(26490634-26490731)
chr4 (107-171)||(8562549-8562613)
chr4 (49-205)||(32890522-32890665)
chr4 (47-115)||(40163339-40163407)
chr4 (107-194)||(25013988-25014075)
chr4 (107-182)||(33140992-33141067)
chr4 (49-115)||(40487063-40487129)
chr4 (53-115)||(41469640-41469702)
chr4 (49-211)||(50517733-50517882)
chr4 (49-115)||(56423416-56423482)
chr4 (46-115)||(6486754-6486823)
chr4 (107-171)||(40487108-40487172)
chr4 (53-205)||(12754952-12755093)
chr4 (49-205)||(46862257-46862400)
chr4 (107-194)||(9973378-9973466)
chr4 (49-115)||(26449221-26449287)
chr4 (54-115)||(8562509-8562570)
chr4 (53-109)||(2326376-2326432)
chr4 (107-167)||(23170160-23170220)
chr4 (107-167)||(26449183-26449242)
chr4 (107-147)||(56423461-56423501)
chr4 (49-115)||(22480350-22480416)
chr4 (50-107)||(17503227-17503284)
chr4 (107-196)||(22480283-22480371)
chr4 (125-186)||(24454229-24454290)
chr4 (49-102)||(51967765-51967818)
chr4 (125-189)||(26972983-26973047)
chr4 (107-147)||(40163320-40163360)
chr4 (48-115)||(9973445-9973512)
chr4 (107-198)||(21305775-21305866)
chr4 (49-92)||(25014077-25014120)
chr4 (53-115)||(23170119-23170181)
chr4 (165-198)||(40317095-40317128)
chr4 (165-198)||(40327169-40327202)
chr4 (132-193)||(41469706-41469767)
[»] scaffold0024 (1 HSPs)
scaffold0024 (108-205)||(136168-136265)
[»] scaffold0573 (1 HSPs)
scaffold0573 (123-205)||(9507-9588)
[»] scaffold0246 (3 HSPs)
scaffold0246 (49-115)||(25002-25068)
scaffold0246 (107-171)||(25047-25111)
scaffold0246 (49-103)||(1971-2025)
[»] scaffold0013 (1 HSPs)
scaffold0013 (155-205)||(89930-89980)
[»] scaffold0118 (1 HSPs)
scaffold0118 (60-183)||(38461-38584)
[»] scaffold0037 (1 HSPs)
scaffold0037 (50-110)||(36903-36963)
[»] scaffold0116 (1 HSPs)
scaffold0116 (125-198)||(4964-5039)


Alignment Details
Target: chr6 (Bit Score: 156; Significance: 5e-83; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 48 - 211
Target Start/End: Complemental strand, 6789142 - 6788979
Alignment:
Q  48 tcaaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaatt 147  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  6789142 tcaaggttttgcaactcgagagtttacctcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaaactcgtacgagtttacctaaaatt 6789043  T
Q  148 gaaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaaaagatc 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6789042 gaaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaaaagatc 6788979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 46 - 211
Target Start/End: Original strand, 1462725 - 1462893
Alignment:
Q  46 aatcaaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaa 145  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  1462725 aatcaaggttttgcaactcgagagtttacctcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaaactagtacgagtttacctaaaa 1462824  T
Q  146 ttgaaattttatacaatttattatatgcatgacatatgtaagc---taatataatactgtaaaaagatc 211  Q
    |||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||    
T  1462825 ttgaaattttatacaatttattatatgcatgacatatgtaagctaataatataatactgtaaaaagatc 1462893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 49 - 179
Target Start/End: Original strand, 10110658 - 10110788
Alignment:
Q  49 caaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattg 148  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||     
T  10110658 caaggttttgcaactcgagagtttacctcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaaactcgcacgagtttacctaaaatta 10110757  T
Q  149 aaattttatacaatttattatatgcatgaca 179  Q
    |||||||||||||||||||||||||||||||    
T  10110758 aaattttatacaatttattatatgcatgaca 10110788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 53 - 171
Target Start/End: Complemental strand, 3001033 - 3000915
Alignment:
Q  53 gttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattgaaat 152  Q
    ||||| ||||||||||||||||| |||||||||||| ||||| ||| |||||||||||||||||||||| | ||  ||| ||||||| ||||||||||||    
T  3001033 gttttacaactcgagagtttacctcaactcgttttatctaggaaaattcgactcgtaaactcgaatcgtgaacttttacaagtttacttaaaattgaaat 3000934  T
Q  153 tttatacaatttattatat 171  Q
    ||||||| |||||||||||    
T  3000933 tttatactatttattatat 3000915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 53 - 171
Target Start/End: Original strand, 31995655 - 31995773
Alignment:
Q  53 gttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattgaaat 152  Q
    ||||| ||||||||||||||||| |||||||||||| ||| |||||||  | | |||||||||| |||||| ||||||||||||||||||||||| ||||    
T  31995655 gttttacaactcgagagtttaccacaactcgttttagctatgtaaacttaaattgtaaactcgactcgtaaactcgtacgagtttacctaaaattaaaat 31995754  T
Q  153 tttatacaatttattatat 171  Q
    | |||| ||||||||||||    
T  31995755 tatataaaatttattatat 31995773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 49 - 198
Target Start/End: Complemental strand, 16439480 - 16439344
Alignment:
Q  49 caaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattg 148  Q
    ||||||||| ||||||||||||||||| |||||||||||  ||||||||||||||||||  ||||||             |||||||||||||||||||     
T  16439480 caaggtttttcaactcgagagtttacctcaactcgttttgtctaggtaaactcgactcgagaactcg-------------tacgagtttacctaaaatta 16439394  T
Q  149 aaattttatacaatttattatatgcatgacatatgtaagctaatataata 198  Q
    ||||| |||| ||||||||| || |||||||||| |||||||||||||||    
T  16439393 aaattatataaaatttattacatacatgacatatataagctaatataata 16439344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 48 - 205
Target Start/End: Original strand, 31975065 - 31975209
Alignment:
Q  48 tcaaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaatt 147  Q
    |||||||||||||||||||||||||||| ||||||||||  | ||| |||||||||||||  ||||||             ||||| |||||||||||||    
T  31975065 tcaaggttttgcaactcgagagtttacctcaactcgtttcgcatagataaactcgactcgagaactcg-------------tacgattttacctaaaatt 31975151  T
Q  148 gaaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaa 205  Q
     ||||| |||| ||||||||||||||| ||||||| |||| |||||||||| ||||||    
T  31975152 aaaattatataaaatttattatatgcaagacatatataagataatataatattgtaaa 31975209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 125 - 205
Target Start/End: Original strand, 31534482 - 31534562
Alignment:
Q  125 ctcgtacgagtttacctaaaattgaaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaa 205  Q
    ||||||||||||||||||||||| ||||| |||| ||||||||||||||| || |||| ||||||||||||||| ||||||    
T  31534482 ctcgtacgagtttacctaaaattaaaattatataaaatttattatatgcaagatatatttaagctaatataatattgtaaa 31534562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 126 - 198
Target Start/End: Complemental strand, 24202828 - 24202756
Alignment:
Q  126 tcgtacgagtttacctaaaattgaaattttatacaatttattatatgcatgacatatgtaagctaatataata 198  Q
    |||||||||||||||||||||| |||||  ||| ||||||||||||||||||||||| |||| ||||||||||    
T  24202828 tcgtacgagtttacctaaaattaaaattaaataaaatttattatatgcatgacatatataagttaatataata 24202756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 123 - 205
Target Start/End: Original strand, 28900206 - 28900287
Alignment:
Q  123 agctcgtacgagtttacctaaaattgaaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaa 205  Q
    |||||||||||||||||||||| || ||||| |||| ||||| ||||||||| ||||||| ||||||||||||||| ||||||    
T  28900206 agctcgtacgagtttacctaaa-ttaaaattatataaaatttcttatatgcaagacatatataagctaatataatattgtaaa 28900287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 182
Target Start/End: Original strand, 32567610 - 32567734
Alignment:
Q  50 aaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattga 149  Q
    ||||||||| ||||| ||||||||||  ||||| |||| | ||||||||||||||||   |||||||      | ||||||||||||||||||||||| |    
T  32567610 aaggttttggaactcaagagtttaccttaactcattttgcttaggtaaactcgactc---aactcgag-----aactcgtacgagtttacctaaaattaa 32567701  T
Q  150 aattttatacaatttattatatgcatgacatat 182  Q
    |||| |||| ||||| |||||||||||| ||||    
T  32567702 aattatataaaatttgttatatgcatgatatat 32567734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 53 - 115
Target Start/End: Original strand, 7834997 - 7835059
Alignment:
Q  53 gttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcg 115  Q
    ||||| ||||| ||||||||||| |||||||||||| ||| |||||||||| |||||||||||    
T  7834997 gttttacaacttgagagtttacctcaactcgttttagctatgtaaactcgaatcgtaaactcg 7835059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 125 - 205
Target Start/End: Complemental strand, 2607656 - 2607576
Alignment:
Q  125 ctcgtacgagtttacctaaaattgaaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaa 205  Q
    ||||||||||||||||||||||| ||| | |||| |||||||||||| ||  |||||| ||||| || |||||| ||||||    
T  2607656 ctcgtacgagtttacctaaaattaaaactatataaaatttattatattcaaaacatatataagccaacataatattgtaaa 2607576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 198
Target Start/End: Complemental strand, 28042127 - 28042039
Alignment:
Q  107 gtaaactcgaatcgtaagctcgtacgagtttacctaaaattgaaattttatacaatttattatatgcatgacatatgtaagctaatataata 198  Q
    |||||||||| |||  | || |||||||||||||||||||| ||||   ||| |||||||||| | |||| ||||||||| |||||||||||    
T  28042127 gtaaactcgactcgagaacttgtacgagtttacctaaaattaaaat---ataaaatttattatttacatgtcatatgtaaactaatataata 28042039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 106
Target Start/End: Original strand, 31534419 - 31534476
Alignment:
Q  49 caaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactc 106  Q
    ||||||||||||||| ||||||||||| ||| |||||||  || ||||||||||||||    
T  31534419 caaggttttgcaacttgagagtttacctcaaatcgttttgtctgggtaaactcgactc 31534476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 98
Target Start/End: Complemental strand, 2607726 - 2607670
Alignment:
Q  42 tttaaatcaaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaa 98  Q
    |||| ||||||||||||||| |||||| |||||  ||||||||||  ||||||||||    
T  2607726 tttacatcaaggttttgcaattcgagaatttacttcaactcgtttcgcctaggtaaa 2607670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 24202892 - 24202836
Alignment:
Q  49 caaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgact 105  Q
    |||||||||  || |||||| |||| |  ||||||||||||||||||||||||||||    
T  24202892 caaggttttataattcgagactttatcttaactcgttttacctaggtaaactcgact 24202836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 46)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 49 - 211
Target Start/End: Complemental strand, 4006128 - 4005966
Alignment:
Q  49 caaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattg 148  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  4006128 caaggttttgcaactcgagagtttacctcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaaactcgtacgagtttacctaaaattg 4006029  T
Q  149 aaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaaaagatc 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4006028 aaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaaaagatc 4005966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 46 - 211
Target Start/End: Complemental strand, 41354204 - 41354040
Alignment:
Q  46 aatcaaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaa 145  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  41354204 aatcaaggttttgcaactcgagagtttacctcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaaactcgtacgagtttacctaaaa 41354105  T
Q  146 ttgaaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaaaagatc 211  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  41354104 ttgaaattttatacaatttattatatgcat-acatatgtaagctaatataatactgtaaaaagatc 41354040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 48 - 211
Target Start/End: Complemental strand, 9174652 - 9174489
Alignment:
Q  48 tcaaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaatt 147  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||    
T  9174652 tcaaggttttgcaactcgagagtttacctcaactcgttttacctaggtaaactcgactcgtaaactcgaatcataaactcgcacgagtttacctaaaatt 9174553  T
Q  148 gaaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaaaagatc 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9174552 gaaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaaaagatc 9174489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 49 - 211
Target Start/End: Original strand, 18246882 - 18247044
Alignment:
Q  49 caaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattg 148  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||    
T  18246882 caaggttttgcaactcgagagtttacctcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaaactcgcacgaatttacctaaaattg 18246981  T
Q  149 aaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaaaagatc 211  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  18246982 aaattttatacaatttattatatgcatgacatatataagctaatataatactgtaaaaagatc 18247044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 49 - 211
Target Start/End: Complemental strand, 51107963 - 51107801
Alignment:
Q  49 caaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattg 148  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||    
T  51107963 caaggttttgcaactcgagagtttacctcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaaactcgcacgaatttacctaaaattg 51107864  T
Q  149 aaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaaaagatc 211  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  51107863 aaattttatacaatttattatatgcatgacatatataagctaatataatactgtaaaaagatc 51107801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 49 - 210
Target Start/End: Original strand, 5208613 - 5208774
Alignment:
Q  49 caaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattg 148  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  5208613 caaggttttacaactcgagagtttacctcaactcgttttacctaggtaaactcgactggtaaactcgaatcgtaaactcgtacgagtttacctaaaattg 5208712  T
Q  149 aaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaaaagat 210  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||  ||||||||||    
T  5208713 aaattttatacaatttattatgtgcatgacatatataagctaatataatatcgtaaaaagat 5208774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 49 - 211
Target Start/End: Complemental strand, 8148110 - 8147962
Alignment:
Q  49 caaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattg 148  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||             ||||||||||||||||||||    
T  8148110 caaggttttgcaactcgagagtttacctcaactcgttttagctaggtaaactcgaatcgtaaactcg-------------tacgagtttacctaaaattg 8148024  T
Q  149 aaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaaaagatc 211  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  8148023 aaattttatacaatttattatatgcat-acatatgtaagctaatataataccgtaaaaagatc 8147962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 49 - 211
Target Start/End: Original strand, 11578454 - 11578602
Alignment:
Q  49 caaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattg 148  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||             ||||||||||||| ||||||||||||||||||||||||    
T  11578454 caaggttttgcaactcgagagtttacctcaactcgttttacctaggtaa-------------actcgaatcgtaaactcgtacgagtttacctaaaattg 11578540  T
Q  149 aaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaaaagatc 211  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||||| ||| |||||||||    
T  11578541 aaattttatacaatttattatatgcat-acatatggaagctaatataatgctggaaaaagatc 11578602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 47 - 205
Target Start/End: Original strand, 49452357 - 49452515
Alignment:
Q  47 atcaaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaat 146  Q
    ||||||||||||||||||||||||||| | ||||||||||   ||||||||| |||||| |||||||||| |||  | ||||||||||||||||||||||    
T  49452357 atcaaggttttgcaactcgagagtttatctcaactcgtttcgtctaggtaaattcgacttgtaaactcgactcgagaactcgtacgagtttacctaaaat 49452456  T
Q  147 tgaaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaa 205  Q
    | ||||| |||| ||||||||||||||| ||||||| |||| |||||||||| ||||||    
T  49452457 taaaattatataaaatttattatatgcaggacatatataagttaatataatattgtaaa 49452515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 49 - 205
Target Start/End: Complemental strand, 3594038 - 3593882
Alignment:
Q  49 caaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattg 148  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || | |  |  ||||||||| ||| ||||||||     
T  3594038 caaggttttacaactcgagagtttacctcaactcgttttacctaggtaaactcgactcgtaaacttgacttgagaattcgtacgagattatctaaaatta 3593939  T
Q  149 aaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaa 205  Q
    ||||| |||| || |||||||||||||||||||| |||||||| |||||| ||||||    
T  3593938 aaattatataaaaattattatatgcatgacatatataagctaaaataatattgtaaa 3593882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 47 - 211
Target Start/End: Original strand, 1242635 - 1242783
Alignment:
Q  47 atcaaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaat 146  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| ||||             |||||||||||| ||||||||||||||||||| ||    
T  1242635 atcaaggttttgcaactcgagagtttacctcaactcgttttacctagataaa-------------ctcgaatcgtaaactcgtacgagtttacctaagat 1242721  T
Q  147 tgaaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaaaagatc 211  Q
    | |||||||||||||||||||||||||||   ||||||||||||||||||| |||||||||||||    
T  1242722 taaaattttatacaatttattatatgcat---atatgtaagctaatataattctgtaaaaagatc 1242783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 49 - 194
Target Start/End: Original strand, 33886292 - 33886437
Alignment:
Q  49 caaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattg 148  Q
    ||||||||| ||||||||||||||| | |||||||||||| ||| |||||||||| ||||||| |||| | |||| |||||||||||||||||||||||     
T  33886292 caaggttttacaactcgagagtttatctcaactcgttttagctatgtaaactcgaatcgtaaattcgacttgtaaactcgtacgagtttacctaaaatta 33886391  T
Q  149 aaattttatacaatttattatatgcatgacatatgtaagctaatat 194  Q
    ||||| |||| ||||||||||||  ||  |||||||||||||||||    
T  33886392 aaattatataaaatttattatatatatagcatatgtaagctaatat 33886437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 49 - 194
Target Start/End: Complemental strand, 33957960 - 33957815
Alignment:
Q  49 caaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattg 148  Q
    ||||||||| ||||||||||||||| | |||||||||||| ||| |||||||||| ||||||| |||| | |||| |||||||||||||||||||||||     
T  33957960 caaggttttacaactcgagagtttatctcaactcgttttagctatgtaaactcgaatcgtaaattcgacttgtaaactcgtacgagtttacctaaaatta 33957861  T
Q  149 aaattttatacaatttattatatgcatgacatatgtaagctaatat 194  Q
    ||||| |||| ||||||||||||  ||  |||||||||||||||||    
T  33957860 aaattatataaaatttattatatatatagcatatgtaagctaatat 33957815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 120 - 211
Target Start/End: Complemental strand, 26758325 - 26758235
Alignment:
Q  120 gtaagctcgtacgagtttacctaaaattgaaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaaaagatc 211  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  26758325 gtaaactcgtacaagtttacctaaaattgaaattttatacaatttattatatgcat-acatatgtaagctaatataatactgtaaaaagatc 26758235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 49 - 194
Target Start/End: Complemental strand, 30177032 - 30176888
Alignment:
Q  49 caaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattg 148  Q
    ||||||||| ||| |||||| |||||| |||||||||||| ||| |||||||||| |||||||||||| |  ||| |||||||||||||||||||||||     
T  30177032 caaggttttacaattcgagaatttacctcaactcgttttagctatgtaaactcgaatcgtaaactcgacttataaactcgtacgagtttacctaaaatt- 30176934  T
Q  149 aaattttatacaatttattatatgcatgacatatgtaagctaatat 194  Q
    ||||| || | ||||||||||||  || ||||||||||||||||||    
T  30176933 aaattataaaaaatttattatatatataacatatgtaagctaatat 30176888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 47 - 198
Target Start/End: Original strand, 50037951 - 50038101
Alignment:
Q  47 atcaaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaat 146  Q
    ||||||||||| || ||||||||||||||  | ||||||||||||| |||| ||||| |||||||||  | |||||| ||| ||| ||||||||||||||    
T  50037951 atcaaggttttacagctcgagagtttaccttatctcgttttacctatgtaagctcgaatcgtaaactt-actcgtaaactcttacaagtttacctaaaat 50038049  T
Q  147 tgaaattttatacaatttattatatgcatgacatatgtaagctaatataata 198  Q
    | ||||| |||| |||||||||||| |||||||||||||||||  |||||||    
T  50038050 taaaattatataaaatttattatatacatgacatatgtaagctggtataata 50038101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 49 - 205
Target Start/End: Original strand, 47370882 - 47371024
Alignment:
Q  49 caaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattg 148  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||  ||             |||||||||||||||||||||||     
T  47370882 caaggttttgcaactcgagagtttacctcaactcgttttgcctaggtaaactcgactcgagaa-------------ctcgtacgagtttacctaaaatta 47370968  T
Q  149 aaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaa 205  Q
    ||||| |||| ||||||||||||||||||||||| | || |||||||||| ||||||    
T  47370969 aaattatataaaatttattatatgcatgacatatat-agttaatataatattgtaaa 47371024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 46 - 205
Target Start/End: Complemental strand, 25254332 - 25254187
Alignment:
Q  46 aatcaaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaa 145  Q
    |||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||  |||| |             ||||||||||||||||     
T  25254332 aatcaaggttttacaactcgagagtttacttcaactcgttttacctaggtaaactcgactcgagaacttg-------------tacgagtttacctaaa- 25254247  T
Q  146 ttgaaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaa 205  Q
    || ||||| |||| ||||||||||||||||||||||| |||||| |||||||||||||||    
T  25254246 ttaaaattatataaaatttattatatgcatgacatatataagctgatataatactgtaaa 25254187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 49 - 147
Target Start/End: Complemental strand, 7799201 - 7799103
Alignment:
Q  49 caaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaatt 147  Q
    ||||||||| ||||||||||||||||| |||||||||||| |||  ||||||||| |||||||||||| |||||| || ||||||||||||||||||||    
T  7799201 caaggttttacaactcgagagtttacctcaactcgttttagctatataaactcgaatcgtaaactcgactcgtaaacttgtacgagtttacctaaaatt 7799103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 107 - 198
Target Start/End: Original strand, 42637520 - 42637610
Alignment:
Q  107 gtaaactcgaatcgtaagctcgtacgagtttacctaaaattgaaattttatacaatttattatatgcatgacatatgtaagctaatataata 198  Q
    |||||||||||| |||| |||||| |||||||||||||||| ||||| |||| |||||||||||| |||||||||| |||||||||||||||    
T  42637520 gtaaactcgaattgtaaactcgtatgagtttacctaaaattaaaattatata-aatttattatatacatgacatatataagctaatataata 42637610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 49 - 211
Target Start/End: Complemental strand, 19863692 - 19863531
Alignment:
Q  49 caaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattg 148  Q
    |||||||||||||||||||||| || | ||| |||||||   ||| |||| |  ||||||||| | || |||  | |||||||||||||| ||||||||     
T  19863692 caaggttttgcaactcgagagtctatctcaattcgttttgtttagataaatttaactcgtaaatttgattcgagaactcgtacgagtttaactaaaatta 19863593  T
Q  149 aaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaaaagatc 211  Q
    ||||| |||| |||| |||||||||||||||||  ||||||||||||||| |||||| |||||    
T  19863592 aaattatataaaatt-attatatgcatgacatacataagctaatataatattgtaaatagatc 19863531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 120 - 205
Target Start/End: Original strand, 28403319 - 28403405
Alignment:
Q  120 gtaagctcgtacgagtttacctaaaattgaaattttatacaatttattatatgcatgacatatgtaagctaa-tataatactgtaaa 205  Q
    |||| ||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||| |||||||| ||||||| ||||||    
T  28403319 gtaaactcgtacgagtttacctaaaattaaaattatataaaatttattatatgcatgacatatataagctaattataatattgtaaa 28403405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 60 - 198
Target Start/End: Original strand, 32759389 - 32759528
Alignment:
Q  60 aactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattgaaatt-ttata 158  Q
    ||||||||| |||||| |||||||||||  ||| ||||| |||||||||| |||||| |||  |  |||||||| ||||||||||||  |||||  ||||    
T  32759389 aactcgagaatttacctcaactcgttttgtctaagtaaattcgactcgtacactcgactcgagaattcgtacgaatttacctaaaataaaaattaatata 32759488  T
Q  159 caatttattatatgcatgacatatgtaagctaatataata 198  Q
     ||||||||||||||| || |||| |||||||||||||||    
T  32759489 aaatttattatatgcaagatatatataagctaatataata 32759528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 26758370 - 26758317
Alignment:
Q  49 caaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcg 102  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26758370 caaggttttgcaactcgagagtttacctcaactcgttttacctaggtaaactcg 26758317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 107 - 194
Target Start/End: Original strand, 34751036 - 34751123
Alignment:
Q  107 gtaaactcgaatcgtaagctcgtacgagtttacctaaaattgaaattttatacaatttattatatgcatgacatatgtaagctaatat 194  Q
    ||||||||||||||||| ||||||||| ||||||||||||| ||||| |||| |||||||| |||  ||  |||||||||||||||||    
T  34751036 gtaaactcgaatcgtaaactcgtacgaatttacctaaaattaaaattatataaaatttattttatatatagcatatgtaagctaatat 34751123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 42 - 211
Target Start/End: Original strand, 48965822 - 48965977
Alignment:
Q  42 tttaaatcaaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacct 141  Q
    ||||||||||||||||||||||||||| |||||| ||||| ||||| ||| ||||||||| |||||  ||             ||| |||||||| ||||    
T  48965822 tttaaatcaaggttttgcaactcgagaatttacctcaacttgttttgccttggtaaactcaactcgagaa-------------ctcctacgagttaacct 48965908  T
Q  142 aaaattgaaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaaaagatc 211  Q
    |||||| ||||| |||| ||||||  ||||||| ||||||||||| ||||||||||| |||||| |||||    
T  48965909 aaaattaaaattatataaaattta-catatgcaagacatatgtaaactaatataatattgtaaatagatc 48965977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 34019715 - 34019651
Alignment:
Q  107 gtaaactcgaatcgtaagctcgtacgagtttacctaaaattgaaattttatacaatttattatat 171  Q
    ||||||| ||||||||| ||||||||||||||||||||||| ||||| |||| ||||||||||||    
T  34019715 gtaaacttgaatcgtaaactcgtacgagtttacctaaaattaaaattatataaaatttattatat 34019651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 47 - 115
Target Start/End: Original strand, 34750989 - 34751057
Alignment:
Q  47 atcaaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcg 115  Q
    ||||||||||| ||||||||||||||||| |||||||||||| | | |||||||||| |||||||||||    
T  34750989 atcaaggttttacaactcgagagtttacctcaactcgttttagcaatgtaaactcgaatcgtaaactcg 34751057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 107 - 198
Target Start/End: Complemental strand, 15928335 - 15928244
Alignment:
Q  107 gtaaactcgaatcgtaagctcgtacgagtttacctaaaattgaaattttatacaatttattatatgcatgacatatgtaagctaatataata 198  Q
    |||||||||| |||  | |||||||||||||||||||||||  |||| |||| |||||| |||||||| |||||||  ||||||||||||||    
T  15928335 gtaaactcgactcgagaactcgtacgagtttacctaaaattagaattatataaaatttaatatatgcaagacatatacaagctaatataata 15928244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 125 - 205
Target Start/End: Original strand, 42303770 - 42303852
Alignment:
Q  125 ctcgtacgagtttacctaaaattgaaattttatacaatttattata--tgcatgacatatgtaagctaatataatactgtaaa 205  Q
    |||||| || ||||||||||||| ||||| |||| |||||||||||  ||||||||||||||||| |||||||||| ||||||    
T  42303770 ctcgtatgactttacctaaaattaaaattatataaaatttattatatatgcatgacatatgtaagttaatataatattgtaaa 42303852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 115
Target Start/End: Original strand, 49236319 - 49236385
Alignment:
Q  49 caaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcg 115  Q
    |||| |||| |||||| |||||||||| ||||||||||| ||||||||||||||||||| |||||||    
T  49236319 caagattttacaactcaagagtttacctcaactcgttttgcctaggtaaactcgactcgaaaactcg 49236385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 107 - 205
Target Start/End: Original strand, 49971048 - 49971146
Alignment:
Q  107 gtaaactcgaatcgtaagctcgtacgagtttacctaaaattgaaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaa 205  Q
    |||||||||| |||  | ||||||||||||||||||||||| |||||  ||| | |||||||| | |||||||||||||| |||||||| || ||||||    
T  49971048 gtaaactcgactcgagaactcgtacgagtttacctaaaattaaaattaaataaagtttattatttacatgacatatgtaaactaatatagtattgtaaa 49971146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 108 - 185
Target Start/End: Complemental strand, 43855142 - 43855065
Alignment:
Q  108 taaactcgaatcgtaagctcgtacgagtttacctaaaattgaaattttatacaatttattatatgcatgacatatgta 185  Q
    ||||||||| || ||| ||||||||||||||||||||||| ||||| |||| |||||||  ||| |||||||||||||    
T  43855142 taaactcgactcataaactcgtacgagtttacctaaaattaaaattatataaaatttatagtatacatgacatatgta 43855065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 49 - 205
Target Start/End: Original strand, 27257570 - 27257713
Alignment:
Q  49 caaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattg 148  Q
    ||||||||| ||||||||||||||||| |||||||||||| | | ||||||||||||||  ||             ||| |||||||||||||||||||     
T  27257570 caaggttttacaactcgagagtttacctcaactcgttttatccaagtaaactcgactcgagaa-------------ctcttacgagtttacctaaaatta 27257656  T
Q  149 aaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaa 205  Q
    |||||  ||  |||||||||| | |||||||||| ||| ||||||||||| ||||||    
T  27257657 aaattaaattaaatttattatttacatgacatatctaaactaatataatattgtaaa 27257713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 107 - 205
Target Start/End: Complemental strand, 52182763 - 52182665
Alignment:
Q  107 gtaaactcgaatcgtaagctcgtacgagtttacctaaaattgaaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaa 205  Q
    |||||||||| |||  | || |||||||||||  ||||||| |||||  ||| |||||||||| | |||||||||||||| ||||||||||| ||||||    
T  52182763 gtaaactcgattcgagaacttgtacgagtttatttaaaattaaaattaaataaaatttattatttacatgacatatgtaaactaatataatattgtaaa 52182665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 205
Target Start/End: Original strand, 35176657 - 35176730
Alignment:
Q  132 gagtttacctaaaattgaaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaa 205  Q
    |||||||||||||||| ||||  |  | ||||||| ||||||||||||||| ||||||||||||||| ||||||    
T  35176657 gagtttacctaaaattaaaatgatccaaaatttatgatatgcatgacatatataagctaatataatattgtaaa 35176730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 61 - 107
Target Start/End: Complemental strand, 15928368 - 15928322
Alignment:
Q  61 actcgagagtttaccgcaactcgttttacctaggtaaactcgactcg 107  Q
    ||||| ||||||||| ||||||||||| |||||||||||||||||||    
T  15928368 actcgggagtttacctcaactcgttttgcctaggtaaactcgactcg 15928322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 49 - 115
Target Start/End: Complemental strand, 34019760 - 34019694
Alignment:
Q  49 caaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcg 115  Q
    ||||||||| ||||||||||||||||| |||||  ||||| ||| ||||||| || |||||||||||    
T  34019760 caaggttttacaactcgagagtttacctcaacttattttagctatgtaaacttgaatcgtaaactcg 34019694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 2292585 - 2292638
Alignment:
Q  54 ttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcg 107  Q
    ||||| |||||||||||||||| |||||| ||||  ||||||||||||||||||    
T  2292585 ttttgtaactcgagagtttacctcaactcattttgtctaggtaaactcgactcg 2292638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 3583311 - 3583364
Alignment:
Q  54 ttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcg 107  Q
    |||| ||||||||||||||||| |||||| |||| | |||||||||||||||||    
T  3583311 ttttacaactcgagagtttacctcaactcattttgcttaggtaaactcgactcg 3583364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 226596 - 226540
Alignment:
Q  142 aaaattgaaattttatacaatttattatatgcatgacatatgtaagctaatataata 198  Q
    |||||| ||||| |||| |||||||||||| | |||||||| |||||||||||||||    
T  226596 aaaatttaaattatataaaatttattatatacgtgacatatataagctaatataata 226540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 171
Target Start/End: Complemental strand, 1109022 - 1108972
Alignment:
Q  120 gtaagctcgtacgagtttacctaaaattgaaattttatacaatttattatat 171  Q
    |||| ||||||||||||||||||||||| ||||| |||| ||||||||||||    
T  1109022 gtaaactcgtacgagtttacctaaaatt-aaattatataaaatttattatat 1108972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 107
Target Start/End: Complemental strand, 51903621 - 51903579
Alignment:
Q  65 gagagtttaccgcaactcgttttacctaggtaaactcgactcg 107  Q
    ||||||||||| ||||||||||| ||||||||| |||||||||    
T  51903621 gagagtttacctcaactcgttttgcctaggtaagctcgactcg 51903579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 1109067 - 1109014
Alignment:
Q  49 caaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcg 102  Q
    ||||||||| ||| ||||||||||| | |||||||||||| ||| |||||||||    
T  1109067 caaggttttacaattcgagagtttatctcaactcgttttagctatgtaaactcg 1109014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 170
Target Start/End: Original strand, 49236382 - 49236427
Alignment:
Q  125 ctcgtacgagtttacctaaaattgaaattttatacaatttattata 170  Q
    ||||||||||||||| ||||||| ||||| |||| |||||||||||    
T  49236382 ctcgtacgagtttacataaaattaaaattatataaaatttattata 49236427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 198
Target Start/End: Complemental strand, 46042558 - 46042522
Alignment:
Q  162 tttattatatgcatgacatatgtaagctaatataata 198  Q
    |||||||||| |||||||| |||||||||||||||||    
T  46042558 tttattatatacatgacatgtgtaagctaatataata 46042522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 151; Significance: 4e-80; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 49 - 211
Target Start/End: Original strand, 16137 - 16299
Alignment:
Q  49 caaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattg 148  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  16137 caaggttttgcaactcgagagtttacctcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaaactcgtacgagtttacctaaaattg 16236  T
Q  149 aaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaaaagatc 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  16237 aaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaaaggatc 16299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 150; Significance: 2e-79; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 46 - 211
Target Start/End: Complemental strand, 19484976 - 19484812
Alignment:
Q  46 aatcaaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaa 145  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  19484976 aatcaaggttttgcaactcgagagtttacctcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaaactcgtacgagtttacctaaaa 19484877  T
Q  146 ttgaaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaaaagatc 211  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  19484876 ttgaaattttatacaatttattatatgcat-acatatgtaagctaatataatactgtaaaaagatc 19484812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 48 - 205
Target Start/End: Original strand, 6387199 - 6387356
Alignment:
Q  48 tcaaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaatt 147  Q
    |||||||||| |||||| |||||||||| ||||||||||| | ||||||||||| |||| ||||||||| |||  |  ||||||||||||||||||||||    
T  6387199 tcaaggttttacaactcaagagtttacctcaactcgttttgcttaggtaaactccactcttaaactcgattcgagaattcgtacgagtttacctaaaatt 6387298  T
Q  148 gaaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaa 205  Q
     ||||| |||| ||||||||||||||||||||||| |||| |||||||||| ||||||    
T  6387299 aaaattatataaaatttattatatgcatgacatatataagttaatataatattgtaaa 6387356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 49 - 195
Target Start/End: Original strand, 26619927 - 26620072
Alignment:
Q  49 caaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattg 148  Q
    ||||||||| ||| ||||||||||||  |||||||||||   |||||||| ||||||||||||||||| |||  | |||||||||||||||||||||||     
T  26619927 caaggttttacaattcgagagtttactacaactcgttttgtttaggtaaa-tcgactcgtaaactcgactcgagaactcgtacgagtttacctaaaatta 26620025  T
Q  149 aaattttatacaatttattatatgcatgacatatgtaagctaatata 195  Q
    ||||| |||| ||||||||||||| ||||||||| ||||||||||||    
T  26620026 aaattatataaaatttattatatggatgacatatataagctaatata 26620072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 50 - 191
Target Start/End: Original strand, 27869074 - 27869215
Alignment:
Q  50 aaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattga 149  Q
    |||||||||||| ||||||||||||| ||| ||||||| | |||||||| |||| ||||||| |||| |||  | |||| |||||||||||||||| | |    
T  27869074 aaggttttgcaattcgagagtttacctcaattcgttttgcttaggtaaattcgattcgtaaattcgactcgagaactcgaacgagtttacctaaaaataa 27869173  T
Q  150 aattttatacaatttattatatgcatgacatatgtaagctaa 191  Q
    |||| |||| ||||||||||||||||||||||| ||||||||    
T  27869174 aattatataaaatttattatatgcatgacatatataagctaa 27869215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 49 - 205
Target Start/End: Original strand, 8029166 - 8029309
Alignment:
Q  49 caaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattg 148  Q
    ||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||  ||||||             |||||||||||||||||||     
T  8029166 caaggttttgcaactcgagagtttacctcaactcgtttcgcctaggtaaactcgactcgagaactcg-------------tacgagtttacctaaaatta 8029252  T
Q  149 aaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaa 205  Q
    ||||| |||| |||||| |||||||| ||||||| ||||||||||||||| ||||||    
T  8029253 aaattatataaaatttactatatgcaagacatatataagctaatataatattgtaaa 8029309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 50 - 205
Target Start/End: Original strand, 27974266 - 27974421
Alignment:
Q  50 aaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattga 149  Q
    ||||||||| |||||||||||||||| ||| |  ||||  |||||||||||||||| |||||||||| |||  | ||||||  ||||||||||||||| |    
T  27974266 aaggttttgtaactcgagagtttacctcaatttattttgtctaggtaaactcgacttgtaaactcgactcgagaactcgtataagtttacctaaaattaa 27974365  T
Q  150 aattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaa 205  Q
    |||| |||| ||   |||||||||||||||||| |||||||| |||||| ||||||    
T  27974366 aattatataaaaaaaattatatgcatgacatatataagctaacataatattgtaaa 27974421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 50 - 205
Target Start/End: Original strand, 28031535 - 28031690
Alignment:
Q  50 aaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattga 149  Q
    ||||||||| |||||||||||||||| ||| |  ||||  |||||||||||||||| |||||||||| |||  | ||||||  ||||||||||||||| |    
T  28031535 aaggttttgtaactcgagagtttacctcaatttattttgtctaggtaaactcgacttgtaaactcgactcgagaactcgtataagtttacctaaaattaa 28031634  T
Q  150 aattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaa 205  Q
    |||| |||| ||   |||||||||||||||||| |||||||| |||||| ||||||    
T  28031635 aattatataaaaaaaattatatgcatgacatatataagctaacataatattgtaaa 28031690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 49 - 205
Target Start/End: Complemental strand, 42423994 - 42423851
Alignment:
Q  49 caaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattg 148  Q
    ||||||||||||||| ||||||||||| ||||||||||| | |||||||||||||||||  ||||||             |||||||||||||||||||     
T  42423994 caaggttttgcaacttgagagtttacctcaactcgttttgcttaggtaaactcgactcgagaactcg-------------tacgagtttacctaaaatta 42423908  T
Q  149 aaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaa 205  Q
    ||||| |||  ||||||||||||||| |||| ||||||||||||||| || ||||||    
T  42423907 aaattatattaaatttattatatgcaagacacatgtaagctaatatattattgtaaa 42423851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 46 - 205
Target Start/End: Complemental strand, 41394655 - 41394509
Alignment:
Q  46 aatcaaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaa 145  Q
    |||||||||||| ||||||||||||||||| ||||||||||| | |||||||||||||||||  ||||||             |||||||||||  ||||    
T  41394655 aatcaaggttttacaactcgagagtttacctcaactcgttttgcttaggtaaactcgactcgagaactcg-------------tacgagtttacaaaaaa 41394569  T
Q  146 ttgaaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaa 205  Q
    || ||||| |||| ||||||||||||||||||||| | ||| ||||||||||| ||||||    
T  41394568 tttaaattatataaaatttattatatgcatgacatgtataacctaatataatattgtaaa 41394509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 48 - 205
Target Start/End: Complemental strand, 24082977 - 24082835
Alignment:
Q  48 tcaaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaatt 147  Q
    |||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |  ||||||             |||||||||||||||||||    
T  24082977 tcaatgttttgcaactcgagagtttacctcaactcgttttgcctaggtaaactcgactagagaactcg-------------tacgagtttacctaaaatt 24082891  T
Q  148 gaaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaa 205  Q
     | ||| |||| ||||||||||||||||||||||  |||| |||||||||| ||||||    
T  24082890 aatattatataaaatttattatatgcatgacata--taagttaatataatattgtaaa 24082835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 107 - 208
Target Start/End: Original strand, 4870523 - 4870624
Alignment:
Q  107 gtaaactcgaatcgtaagctcgtacgagtttacctaaaattgaaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaaa 206  Q
    ||||||| ||||||||| ||||||||||||||||||||||| | ||| |||| |||||||||||| | |||||||||||||| || |||||| || ||||    
T  4870523 gtaaacttgaatcgtaaactcgtacgagtttacctaaaattaatattatataaaatttattatatacgtgacatatgtaagccaacataatattgcaaaa 4870622  T
Q  207 ag 208  Q
    ||    
T  4870623 ag 4870624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 49 - 205
Target Start/End: Complemental strand, 18985119 - 18984976
Alignment:
Q  49 caaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattg 148  Q
    ||||||||||||||||||||||||||| ||||| |||||  ||||||||||| ||||||  |||||| |             |||||||||||||||||     
T  18985119 caaggttttgcaactcgagagtttacctcaacttgttttgtctaggtaaacttgactcgagaactcgca-------------cgagtttacctaaaatta 18985033  T
Q  149 aaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaa 205  Q
    ||||| |||| |||||||||| |||| ||||||| ||||||||||||||| ||||||    
T  18985032 aaattatataaaatttattatgtgcaagacatatataagctaatataatattgtaaa 18984976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 120 - 196
Target Start/End: Original strand, 33177259 - 33177335
Alignment:
Q  120 gtaagctcgtacgagtttacctaaaattgaaattttatacaatttattatatgcatgacatatgtaagctaatataa 196  Q
    |||| ||||||| ||||||||||||||| ||||| |||| |||||||||||| |||||||||||||| |||||||||    
T  33177259 gtaaactcgtaccagtttacctaaaattaaaattatataaaatttattatatacatgacatatgtaaactaatataa 33177335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 126 - 205
Target Start/End: Original strand, 12737459 - 12737539
Alignment:
Q  126 tcgtacgagtttacctaaaattgaaattttatacaa-tttattatatgcatgacatatgtaagctaatataatactgtaaa 205  Q
    ||||||||||| |||||||||  ||||| |||| || ||||||||||||||||||||| ||||||||||||||| ||||||    
T  12737459 tcgtacgagttaacctaaaatgaaaattatataaaaatttattatatgcatgacatatataagctaatataatattgtaaa 12737539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 136 - 198
Target Start/End: Original strand, 27876479 - 27876541
Alignment:
Q  136 ttacctaaaattgaaattttatacaatttattatatgcatgacatatgtaagctaatataata 198  Q
    |||||||||||  ||||| |||| ||||||||||||||||||||||| |||||||||||||||    
T  27876479 ttacctaaaataaaaattatataaaatttattatatgcatgacatatataagctaatataata 27876541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 136 - 198
Target Start/End: Original strand, 28016660 - 28016722
Alignment:
Q  136 ttacctaaaattgaaattttatacaatttattatatgcatgacatatgtaagctaatataata 198  Q
    |||||||||||  ||||| |||| ||||||||||||||||||||||| |||||||||||||||    
T  28016660 ttacctaaaataaaaattatataaaatttattatatgcatgacatatataagctaatataata 28016722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 107 - 211
Target Start/End: Original strand, 12521764 - 12521867
Alignment:
Q  107 gtaaactcgaatcgtaagctcgtacgagtttacctaaaattgaaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaaa 206  Q
    |||||||||| |||  | ||||| ||||||||||||||||| ||||| |||| |||||||| ||| |||| ||||| ||||||||||| ||| ||||||     
T  12521764 gtaaactcgattcgagaactcgtgcgagtttacctaaaattaaaattatata-aatttattttattcatggcatatataagctaatatgatattgtaaat 12521862  T
Q  207 agatc 211  Q
    |||||    
T  12521863 agatc 12521867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 196
Target Start/End: Original strand, 3007128 - 3007266
Alignment:
Q  46 aatcaaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaa 145  Q
    |||||||||||| ||||||||||||||||| ||||||||||| |||||  |||||||| |||       ||||       ||||||||||||||||||||    
T  3007128 aatcaaggttttacaactcgagagtttacctcaactcgttttgcctagcaaaactcgattcg------agaat-------tcgtacgagtttacctaaaa 3007214  T
Q  146 ttgaaat-tttatacaatttattatatgcatgacatatgtaagctaatataa 196  Q
    || ||||   |||| ||||||||||||||| || |||| |||||||||||||    
T  3007215 ttaaaatcaatataaaatttattatatgcaagaaatatataagctaatataa 3007266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 12737396 - 12737453
Alignment:
Q  50 aaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcg 107  Q
    |||||||| ||| ||||||||||||| ||||||||||| | |||||||||||||||||    
T  12737396 aaggttttacaattcgagagtttacctcaactcgttttgcttaggtaaactcgactcg 12737453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 33177214 - 33177267
Alignment:
Q  49 caaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcg 102  Q
    ||||||||| |||||||||||||||||| |||| |||||||||| |||||||||    
T  33177214 caaggttttacaactcgagagtttaccgtaacttgttttacctatgtaaactcg 33177267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 107
Target Start/End: Complemental strand, 44977529 - 44977472
Alignment:
Q  50 aaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcg 107  Q
    |||||||||||||||||||||||||  ||||||||||| | |||||||| ||||||||    
T  44977529 aaggttttgcaactcgagagtttacttcaactcgttttgcttaggtaaattcgactcg 44977472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 186
Target Start/End: Complemental strand, 35880089 - 35880028
Alignment:
Q  125 ctcgtacgagtttacctaaaattgaaattttatacaatttattatatgcatgacatatgtaa 186  Q
    |||||||||||||| |||||||| |||||  ||| |||||||||| | ||||||||||||||    
T  35880089 ctcgtacgagtttatctaaaattaaaattaaataaaatttattatttacatgacatatgtaa 35880028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 153
Target Start/End: Complemental strand, 7761310 - 7761210
Alignment:
Q  53 gttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattgaaat 152  Q
    ||||| ||||| ||||| ||||| |||||||||||   |  ||||| | ||||||||||||| | |||  | |||||||||||||| |||||||| ||||    
T  7761310 gttttacaacttgagaggttacctcaactcgttttgtttgagtaaatttgactcgtaaactcaactcgagaactcgtacgagtttatctaaaattaaaat 7761211  T
Q  153 t 153  Q
    |    
T  7761210 t 7761210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 147
Target Start/End: Complemental strand, 41252763 - 41252723
Alignment:
Q  107 gtaaactcgaatcgtaagctcgtacgagtttacctaaaatt 147  Q
    ||||||||||||| ||| || ||||||||||||||||||||    
T  41252763 gtaaactcgaatcttaaacttgtacgagtttacctaaaatt 41252723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 49 - 211
Target Start/End: Complemental strand, 8599716 - 8599554
Alignment:
Q  49 caaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattg 148  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  8599716 caaggttttgcaactcgagagtttacctcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaaactcgcacgagtttacctaaaattg 8599617  T
Q  149 aaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaaaagatc 211  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  8599616 aaattttatacaatttattatatgcatgatatatgtaagctaatataatactgtaaaaagatc 8599554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 46 - 211
Target Start/End: Complemental strand, 49296877 - 49296713
Alignment:
Q  46 aatcaaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaa 145  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  49296877 aatcaaggttttgcaactcgagagtttacctcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaaactcgtacgagtttacctaaaa 49296778  T
Q  146 ttgaaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaaaagatc 211  Q
    || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  49296777 ttaaaattttatacaatttattatatgcat-acatatgtaagctaatataatactgtaaaaagatc 49296713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 51 - 205
Target Start/End: Original strand, 7436859 - 7437013
Alignment:
Q  51 aggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattgaa 150  Q
    ||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||| |||  | ||||||||||||||||||||||| ||    
T  7436859 aggttttgcaactcgagagtttacctcaactcgttttgcttaggtaaactcgactcgtaaactcgactcgagaactcgtacgagtttacctaaaattaaa 7436958  T
Q  151 attttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaa 205  Q
    ||| |||| ||||||||||||||||||||||| ||||||||||||||| ||||||    
T  7436959 attatataaaatttattatatgcatgacatatataagctaatataatattgtaaa 7437013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 53 - 211
Target Start/End: Original strand, 22488419 - 22488569
Alignment:
Q  53 gttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattgaaat 152  Q
    ||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||        ||| |||| ||||||||||||||||||||||||||||    
T  22488419 gttttacaactcgagagtttacctcaactcgttttacctagttaaactcgactcg--------aattgtaaactcgtacgagtttacctaaaattgaaat 22488510  T
Q  153 tttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaaaagatc 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  22488511 tttatacaatttattatatgcatgacatatgtaagctaatataatattgtaaaaagatc 22488569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 49 - 205
Target Start/End: Complemental strand, 33694070 - 33693914
Alignment:
Q  49 caaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattg 148  Q
    |||||||||||||||||||||||||||  |||||||||| |  | ||||||||||||||||||||| | |||  | |||||||||||||||| ||||||     
T  33694070 caaggttttgcaactcgagagtttaccttaactcgttttgctaatgtaaactcgactcgtaaactcaactcgagaactcgtacgagtttaccaaaaatta 33693971  T
Q  149 aaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaa 205  Q
    ||||| |||| ||||||||||||||||||||||| ||||||||||||||| ||||||    
T  33693970 aaattatataaaatttattatatgcatgacatatataagctaatataatattgtaaa 33693914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 49 - 194
Target Start/End: Original strand, 9817992 - 9818136
Alignment:
Q  49 caaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattg 148  Q
    ||||||||| ||||||||||||||||| |||||||||||| ||| |||||||||| |||||||||||| |||||| |||||||||| ||||||||||||     
T  9817992 caaggttttacaactcgagagtttacctcaactcgttttagctatgtaaactcgaatcgtaaactcgactcgtaaactcgtacgag-ttacctaaaatta 9818090  T
Q  149 aaattttatacaatttattatatgcatgacatatgtaagctaatat 194  Q
    ||||| |||| ||||||||||||  ||  |||||||||||||||||    
T  9818091 aaattatataaaatttattatatatatagcatatgtaagctaatat 9818136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 49 - 194
Target Start/End: Complemental strand, 27262041 - 27261896
Alignment:
Q  49 caaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatc-gtaagctcgtacgagtttacctaaaatt 147  Q
    ||||||||| ||||||||||||||||| |||||||||||| ||| ||||||| || |||||||||||| || |||| |||||||||||||||||||||||    
T  27262041 caaggttttacaactcgagagtttacctcaactcgttttagctatgtaaacttgaatcgtaaactcgactcagtaaactcgtacgagtttacctaaaatt 27261942  T
Q  148 gaaattttatacaatttattatatgcatgacatatgtaagctaatat 194  Q
     ||||| |||| ||||||| ||||  || ||||||||||||||||||    
T  27261941 -aaattatataaaatttatgatatatataacatatgtaagctaatat 27261896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 49 - 194
Target Start/End: Original strand, 47466818 - 47466962
Alignment:
Q  49 caaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattg 148  Q
    ||||||||| ||||||||||||||| | |||||||||||| ||| |||||||||| |||||||||||| | |||| |||||||||||||||||||||||     
T  47466818 caaggttttacaactcgagagtttatctcaactcgttttagctatgtaaactcgaatcgtaaactcgacttgtaaactcgtacgagtttacctaaaatta 47466917  T
Q  149 aaattttatacaatttattatatgcatgacatatgtaagctaatat 194  Q
    ||||| | || ||||||||||||  ||  |||||||||||||||||    
T  47466918 aaattat-taaaatttattatatatatagcatatgtaagctaatat 47466962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 47 - 205
Target Start/End: Complemental strand, 49459171 - 49459011
Alignment:
Q  47 atcaaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaat 146  Q
    ||||||||||||||||||||||||||||| ||||||||||   ||||||||| | |||||||||||| || |||  |  |||||||||||||||||||||    
T  49459171 atcaaggttttgcaactcgagagtttacctcaactcgtttcgtctaggtaaatttgactcgtaaacttgactcgagaattcgtacgagtttacctaaaat 49459072  T
Q  147 tgaaattttatacaatttattatatgcatg--acatatgtaagctaatataatactgtaaa 205  Q
    | ||||| |||| ||||||||||||||| |  | |||| ||||||||||||||| ||||||    
T  49459071 taaaattatataaaatttattatatgcaagccatatatataagctaatataatattgtaaa 49459011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 50 - 207
Target Start/End: Complemental strand, 53836704 - 53836561
Alignment:
Q  50 aaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattga 149  Q
    |||||||||||||| ||||||||||| | |||||||||| |||| ||||||||||||| |||||||             ||||||||||||||||||| |    
T  53836704 aaggttttgcaacttgagagtttacctcgactcgttttatctagataaactcgactcgaaaactcg-------------tacgagtttacctaaaattaa 53836618  T
Q  150 aattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaaaa 207  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  53836617 aattttatacaatttattatatgcat-acatatctaagctaatataatactgtaaaaa 53836561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 47 - 205
Target Start/End: Complemental strand, 43173684 - 43173539
Alignment:
Q  47 atcaaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaat 146  Q
    ||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||  ||             |||||| |||||||| ||||||    
T  43173684 atcaaggttttgcaactcgagagtttacctcaactcgttttatttaggtaaactcgactcgagaa-------------ctcgtatgagtttacataaaat 43173598  T
Q  147 tgaaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaa 205  Q
    | |||||  ||| ||||||||||||||||||||| | ||||||||||||||| ||||||    
T  43173597 taaaattacataaaatttattatatgcatgacatgtataagctaatataatattgtaaa 43173539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 130 - 205
Target Start/End: Original strand, 4962090 - 4962165
Alignment:
Q  130 acgagtttacctaaaattgaaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaa 205  Q
    |||||||||||||||||| ||||| |||| ||||||||||||||||||||||| ||||||||||||||| ||||||    
T  4962090 acgagtttacctaaaattaaaattatataaaatttattatatgcatgacatatataagctaatataatattgtaaa 4962165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 46 - 198
Target Start/End: Original strand, 30237895 - 30238047
Alignment:
Q  46 aatcaaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaa 145  Q
    |||||| ||||| | | ||||||||| | | ||||| |||||||||| ||||| ||||    ||||||||| | ||||  | ||||||||||||||||||    
T  30237895 aatcaacgttttacgattcgagagttcagctcaacttgttttacctatgtaaattcgaactataaactcgacttgtaaatttgtacgagtttacctaaaa 30237994  T
Q  146 ttgaaattttatacaatttattatatgcatgacatatgtaagctaatataata 198  Q
    || ||| | |||| |||||||||||| || ||||||||| |||||||||||||    
T  30237995 ttaaaagtatataaaatttattatatacaagacatatgttagctaatataata 30238047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 107 - 194
Target Start/End: Complemental strand, 40064884 - 40064798
Alignment:
Q  107 gtaaactcgaatcgtaagctcgtacgagtttacctaaaattgaaattttatacaatttattatatgcatgacatatgtaagctaatat 194  Q
    ||||||||||||||||| |||||||||||||| | |||||| ||||| |||| ||||||||||||  || ||||||||||||||||||    
T  40064884 gtaaactcgaatcgtaaactcgtacgagtttatccaaaatt-aaattatataaaatttattatatatataacatatgtaagctaatat 40064798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 107 - 194
Target Start/End: Original strand, 53644796 - 53644882
Alignment:
Q  107 gtaaactcgaatcgtaagctcgtacgagtttacctaaaattgaaattttatacaatttattatatgcatgacatatgtaagctaatat 194  Q
    ||||| ||||||||||| ||||||||||||||||||||||| ||||| |||| |||||||||||   || ||||||||||||||||||    
T  53644796 gtaaattcgaatcgtaaactcgtacgagtttacctaaaatt-aaattatataaaatttattatacatataacatatgtaagctaatat 53644882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 107 - 205
Target Start/End: Complemental strand, 24064039 - 24063942
Alignment:
Q  107 gtaaactcgaatcgtaagctcgtacgagtttacctaaaattgaaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaa 205  Q
    |||||||||| |||  | |||||| ||||||||||||| || ||||| |||| ||||||||||||||| ||||||| ||||||||||||||| ||||||    
T  24064039 gtaaactcgactcgagaactcgtatgagtttacctaaa-ttaaaattatataaaatttattatatgcacgacatatataagctaatataatattgtaaa 24063942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 48 - 205
Target Start/End: Complemental strand, 25932207 - 25932051
Alignment:
Q  48 tcaaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaatt 147  Q
    |||||||||| ||||| ||||||||||  |||||||||||  || ||||||||||||| ||||  || |||||  | ||||||||||||||| |||||      
T  25932207 tcaaggttttacaacttgagagtttacttcaactcgttttgtctgggtaaactcgacttgtaatttcaaatcgagaactcgtacgagtttacttaaaa-- 25932110  T
Q  148 gaaattttatacaatttattatatgcatg--acatatgtaagctaatataatactgtaaa 205  Q
     | ||| |||| |||||||||||| ||||  | |||| ||||||||||||||| ||||||    
T  25932109 -atattatataaaatttattatatacatgatatatatataagctaatataatattgtaaa 25932051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 63 - 163
Target Start/End: Complemental strand, 32766705 - 32766605
Alignment:
Q  63 tcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattgaaattttatacaat 162  Q
    ||||||||||||| ||| |||||||  ||| ||| ||||||||||||||||||| | |  | ||||||||||||||||||||||| ||||| |||| |||    
T  32766705 tcgagagtttacctcaattcgttttgtctatgtatactcgactcgtaaactcgacttgagaactcgtacgagtttacctaaaattaaaattatataaaat 32766606  T
Q  163 t 163  Q
    |    
T  32766605 t 32766605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 50 - 205
Target Start/End: Complemental strand, 25050352 - 25050210
Alignment:
Q  50 aaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattga 149  Q
    |||||||| ||||||||||||||||| ||||||||||| || | ||||||||||||||  |||||| |             ||||||||||||||||| |    
T  25050352 aaggttttacaactcgagagtttacctcaactcgttttgcccaagtaaactcgactcgagaactcgga-------------cgagtttacctaaaattaa 25050266  T
Q  150 aattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaa 205  Q
     |||  ||| |||||||||| | |||||||||||||| ||||||||||| ||||||    
T  25050265 tattaaataaaatttattatttacatgacatatgtaaactaatataatattgtaaa 25050210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 107 - 182
Target Start/End: Complemental strand, 27163092 - 27163017
Alignment:
Q  107 gtaaactcgaatcgtaagctcgtacgagtttacctaaaattgaaattttatacaatttattatatgcatgacatat 182  Q
    ||||| |||| |||||| ||||||| ||||||||||||||| ||||| |||| |||||||||||| ||||||||||    
T  27163092 gtaaattcgactcgtaaactcgtacaagtttacctaaaattaaaattatataaaatttattatatacatgacatat 27163017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 107 - 194
Target Start/End: Complemental strand, 37833431 - 37833345
Alignment:
Q  107 gtaaactcgaatcgtaagctcgtacgagtttacctaaaattgaaattttatacaatttattatatgcatgacatatgtaagctaatat 194  Q
    ||||||||||||||||| ||||||| | || |||||||||| ||||| |||| ||||||||||||  || ||||||||||||||||||    
T  37833431 gtaaactcgaatcgtaaactcgtacaaattaacctaaaatt-aaattatataaaatttattatatatataacatatgtaagctaatat 37833345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 107 - 194
Target Start/End: Complemental strand, 49294339 - 49294253
Alignment:
Q  107 gtaaactcgaatcgtaagctcgtacgagtttacctaaaattgaaattttatacaatttattatatgcatgacatatgtaagctaatat 194  Q
    ||||||||||||||||| || ||||||||||| |||||||| ||||| |||| ||||||| ||||  || ||||||||||||||||||    
T  49294339 gtaaactcgaatcgtaaacttgtacgagtttatctaaaatt-aaattatataaaatttatcatatatataacatatgtaagctaatat 49294253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 107 - 205
Target Start/End: Complemental strand, 1666624 - 1666526
Alignment:
Q  107 gtaaactcgaatcgtaagctcgtacgagtttacctaaaattgaaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaa 205  Q
    ||||| |||| ||| || |||||||||||||| |||||||  ||||| | || |||||||||||||||||| |||| ||| ||||||||||| ||||||    
T  1666624 gtaaattcgactcgaaaactcgtacgagtttatctaaaatgaaaattatgtaaaatttattatatgcatgaaatatataacctaatataatattgtaaa 1666526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 143 - 210
Target Start/End: Complemental strand, 1545328 - 1545261
Alignment:
Q  143 aaattgaaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaaaagat 210  Q
    ||||| |||||  ||| |||||||||||||||||||||||||||| |||||||||| |||||| ||||    
T  1545328 aaattaaaattacatataatttattatatgcatgacatatgtaagttaatataatattgtaaacagat 1545261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 198
Target Start/End: Original strand, 9030497 - 9030554
Alignment:
Q  141 taaaattgaaattttatacaatttattatatgcatgacatatgtaagctaatataata 198  Q
    ||||||| ||||| |||| |||||||||||| ||||||||| ||||||||||||||||    
T  9030497 taaaattaaaattatataaaatttattatatccatgacataagtaagctaatataata 9030554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 115
Target Start/End: Complemental strand, 37833463 - 37833410
Alignment:
Q  62 ctcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcg 115  Q
    |||||||||||||| |||||||||||| ||| |||||||||| |||||||||||    
T  37833463 ctcgagagtttacctcaactcgttttaactatgtaaactcgaatcgtaaactcg 37833410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 45731406 - 45731341
Alignment:
Q  50 aaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcg 115  Q
    ||||||||  |||||||||||||||| |||||||||||| ||| |||||||||| | |||||||||    
T  45731406 aaggttttataactcgagagtttacctcaactcgttttagctatgtaaactcgaattgtaaactcg 45731341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 46 - 115
Target Start/End: Complemental strand, 40064928 - 40064863
Alignment:
Q  46 aatcaaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcg 115  Q
    ||||||| |||| ||||||||||||||||| ||||||||||    ||||||||||||| |||||||||||    
T  40064928 aatcaagcttttacaactcgagagtttacctcaactcgttt----taggtaaactcgaatcgtaaactcg 40064863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 49 - 107
Target Start/End: Original strand, 4962024 - 4962081
Alignment:
Q  49 caaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcg 107  Q
    |||||||||||||||| |||||||||| ||||| | ||| |||||||||||||||||||    
T  4962024 caaggttttgcaactctagagtttacctcaacttg-tttgcctaggtaaactcgactcg 4962081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 107
Target Start/End: Complemental strand, 7667520 - 7667463
Alignment:
Q  50 aaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcg 107  Q
    |||||||| ||||| ||||||||||| ||||||||||| | || ||||||||||||||    
T  7667520 aaggttttacaacttgagagtttacctcaactcgttttgcttaagtaaactcgactcg 7667463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 107
Target Start/End: Complemental strand, 24064067 - 24064026
Alignment:
Q  66 agagtttaccgcaactcgttttacctaggtaaactcgactcg 107  Q
    |||||||||| ||||||||||| |||||||||||||||||||    
T  24064067 agagtttacctcaactcgttttgcctaggtaaactcgactcg 24064026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 205
Target Start/End: Original strand, 21718141 - 21718220
Alignment:
Q  125 ctcgtacgagtttacctaaaattgaaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaa 205  Q
    ||||||||||||||||||||||| |||||  ||| | ||| |||| | | |||||||||||| ||||||||||| ||||||    
T  21718141 ctcgtacgagtttacctaaaattaaaattaaata-atttttttatttacttgacatatgtaacctaatataatattgtaaa 21718220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 88
Target Start/End: Original strand, 53644750 - 53644790
Alignment:
Q  48 tcaaggttttgcaactcgagagtttaccgcaactcgtttta 88  Q
    |||||||||| ||||||||||||||||| ||||||||||||    
T  53644750 tcaaggttttacaactcgagagtttacctcaactcgtttta 53644790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 158
Target Start/End: Complemental strand, 45731362 - 45731311
Alignment:
Q  107 gtaaactcgaatcgtaagctcgtacgagtttacctaaaattgaaattttata 158  Q
    |||||||||||| |||| |||||| |||||||||||||||| ||||| ||||    
T  45731362 gtaaactcgaattgtaaactcgtatgagtttacctaaaattaaaattatata 45731311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 107
Target Start/End: Original strand, 21385811 - 21385865
Alignment:
Q  53 gttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcg 107  Q
    |||| |||| ||||||||||||| ||||||||||| | ||| |||||||||||||    
T  21385811 gtttcgcaattcgagagtttacctcaactcgttttgcttagataaactcgactcg 21385865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 158
Target Start/End: Complemental strand, 29650914 - 29650840
Alignment:
Q  84 ttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattgaaattttata 158  Q
    ||||| ||| |||||||||| | |||||||||| | |||| ||||||||| | ||||||||||| ||||| ||||    
T  29650914 ttttatctatgtaaactcgaattgtaaactcgatttgtaaactcgtacgaatgtacctaaaattaaaattatata 29650840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 143; Significance: 3e-75; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 49 - 211
Target Start/End: Original strand, 4639219 - 4639380
Alignment:
Q  49 caaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattg 148  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  4639219 caaggttttgcaactcgagagtttacctcaactcgttttaactaggtaaactcgactcgtaaactcgaatcgtaaactcgtacgagtttacctaaaattg 4639318  T
Q  149 aaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaaaagatc 211  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  4639319 aaattttatacaatttattatatgcat-acatatgtaagctaatataatactgtaaaaagatc 4639380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 49 - 206
Target Start/End: Original strand, 37915398 - 37915555
Alignment:
Q  49 caaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattg 148  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||    
T  37915398 caaggttttgcaactcgagagtttacctcaactcgttttacctaggtaaactcgactcgtaaacttgaatcgtaaactcgtacgaatttacctaaaattg 37915497  T
Q  149 aaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaaa 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37915498 aaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaaa 37915555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 50 - 195
Target Start/End: Original strand, 5771484 - 5771628
Alignment:
Q  50 aaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattga 149  Q
    ||||||||||||||| ||| |||||| ||||||||||| |||||||||||| ||||||||||||||| ||| ||  ||||||||||||||||||||||||    
T  5771484 aaggttttgcaactcaagaatttacctcaactcgttttgcctaggtaaacttgactcgtaaactcgactcgaaaattcgtacgagtttacctaaaattga 5771583  T
Q  150 aattttatacaatttattatatgcatgacatatgtaagctaatata 195  Q
    |||| |||| || |||||||||||||||||||| ||||||||||||    
T  5771584 aattatata-aaattattatatgcatgacatatataagctaatata 5771628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 94 - 211
Target Start/End: Complemental strand, 14742166 - 14742050
Alignment:
Q  94 gtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattgaaattttatacaatttattatatgcatgacatatgtaagctaata 193  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||| ||||||    
T  14742166 gtaaactcgaatcgtaaactcgaatcgtaaactcgtacgagtttacttaaaattgaaattttatacaatttattatatgtat-acatatgtaaactaata 14742068  T
Q  194 taatactgtaaaaagatc 211  Q
    ||||||||||||||||||    
T  14742067 taatactgtaaaaagatc 14742050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 49 - 194
Target Start/End: Complemental strand, 21024735 - 21024590
Alignment:
Q  49 caaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattg 148  Q
    ||||||||| ||||||||||||||||| ||||| |||||| ||| |||||||||| |||||||||||| |||||| |||||||||||||||||||||||     
T  21024735 caaggttttacaactcgagagtttacctcaactagttttagctatgtaaactcgaatcgtaaactcgactcgtaaactcgtacgagtttacctaaaatta 21024636  T
Q  149 aaattttatacaatttattatatgcatgacatatgtaagctaatat 194  Q
    ||||| |||| ||||||||||||  ||  |||||||||||||||||    
T  21024635 aaattatataaaatttattatatatatagcatatgtaagctaatat 21024590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 48 - 205
Target Start/End: Complemental strand, 43172878 - 43172721
Alignment:
Q  48 tcaaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaatt 147  Q
    |||||||||| ||||||||||||||||| |||||| |||| |||||||||||||||| |||||||| || |||  | |||||||||| ||| |||||||     
T  43172878 tcaaggttttacaactcgagagtttacctcaactcattttgcctaggtaaactcgacccgtaaacttgagtcgagaactcgtacgagattatctaaaata 43172779  T
Q  148 gaaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaa 205  Q
     ||||| |||| || |||||||||||||||||||| |||||||| |||||| ||||||    
T  43172778 aaaattatataaaaattattatatgcatgacatatataagctaaaataatattgtaaa 43172721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 53 - 171
Target Start/End: Complemental strand, 35314194 - 35314076
Alignment:
Q  53 gttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattgaaat 152  Q
    ||||| ||||| ||||||||||| |||||||||||| ||| |||||||||| |||||||||||| |||||| |||||| |||||||||||||||| ||||    
T  35314194 gttttacaacttgagagtttacctcaactcgttttagctatgtaaactcgaatcgtaaactcgactcgtaaactcgtatgagtttacctaaaattaaaat 35314095  T
Q  153 tttatacaatttattatat 171  Q
    | |||| ||||||||||||    
T  35314094 tatataaaatttattatat 35314076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 52 - 194
Target Start/End: Original strand, 37391892 - 37392033
Alignment:
Q  52 ggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattgaaa 151  Q
    |||||| ||||||||||||||||| |||||| |||||  || |||||||||| |||||||||||| |  ||| ||||||||||||||||||||||| |||    
T  37391892 ggttttacaactcgagagtttacctcaactcattttatttatgtaaactcgaatcgtaaactcgacttataaactcgtacgagtttacctaaaatt-aaa 37391990  T
Q  152 ttttatacaatttattatatgcatgacatatgtaagctaatat 194  Q
    || |||| ||||||||||||  || ||||||||||||||||||    
T  37391991 ttatataaaatttattatatatataacatatgtaagctaatat 37392033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 49 - 194
Target Start/End: Complemental strand, 38911142 - 38910998
Alignment:
Q  49 caaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattg 148  Q
    |||| |||| |||||||||||||||||  ||||| |||||  || |||||||||| || ||||||||| |||||| |||||||||||||||||||||||     
T  38911142 caagattttacaactcgagagtttacctaaactcattttagttatgtaaactcgaatcataaactcgactcgtaaactcgtacgagtttacctaaaatt- 38911044  T
Q  149 aaattttatacaatttattatatgcatgacatatgtaagctaatat 194  Q
    ||||| |||| ||||||||||||  || ||||||||||||||||||    
T  38911043 aaattatataaaatttattatatatataacatatgtaagctaatat 38910998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 47 - 205
Target Start/End: Complemental strand, 42611308 - 42611163
Alignment:
Q  47 atcaaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaat 146  Q
    ||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||  ||||||             ||||||||||||||||||    
T  42611308 atcaaggttttacaactcgagagtttacctcaactcgttttgcctaggtaaactcgactcgagaactcg-------------tacgagtttacctaaaat 42611222  T
Q  147 tgaaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaa 205  Q
    | ||||| |||| | ||||||||||||||||||||| ||||||||||| ||| ||||||    
T  42611221 taaaattatataaagtttattatatgcatgacatatataagctaatatgatattgtaaa 42611163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 107 - 198
Target Start/End: Original strand, 1253887 - 1253978
Alignment:
Q  107 gtaaactcgaatcgtaagctcgtacgagtttacctaaaattgaaattttatacaatttattatatgcatgacatatgtaagctaatataata 198  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||| |||| |||||||||||| ||| | ||||||||||||||||||||    
T  1253887 gtaaactcgaatcgtaaactcgtacgagtttacctaaaattaaaattatataaaatttattatatacataagatatgtaagctaatataata 1253978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 53 - 128
Target Start/End: Complemental strand, 14742259 - 14742184
Alignment:
Q  53 gttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcg 128  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  14742259 gttttgcaactcaagagtttacctcaactcgttttacctaggtaaactcgactcgtaaactcgactcgtaaactcg 14742184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 46 - 171
Target Start/End: Complemental strand, 34657298 - 34657174
Alignment:
Q  46 aatcaaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaa 145  Q
    |||||||||||||||| | ||||||||| | |||||| ||||| ||| |||||||||| |||||||||||| ||||||  |||||||| |||| ||||||    
T  34657298 aatcaaggttttgcaatttgagagtttatctcaactcattttagctatgtaaactcgaatcgtaaactcgactcgtaaattcgtacgaatttatctaaaa 34657199  T
Q  146 ttgaaattttatacaatttattatat 171  Q
    || ||||| |||| ||||||||||||    
T  34657198 tt-aaattatataaaatttattatat 34657174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 107 - 194
Target Start/End: Original strand, 14731756 - 14731843
Alignment:
Q  107 gtaaactcgaatcgtaagctcgtacgagtttacctaaaattgaaattttatacaatttattatatgcatgacatatgtaagctaatat 194  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||| |||| ||||||||||||  ||  |||||||||||||||||    
T  14731756 gtaaactcgaatcgtaaactcgtacgagtttacctaaaattaaaattatataaaatttattatatatatagcatatgtaagctaatat 14731843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 107 - 205
Target Start/End: Complemental strand, 21486880 - 21486782
Alignment:
Q  107 gtaaactcgaatcgtaagctcgtacgagtttacctaaaattgaaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaa 205  Q
    |||||||||| |||  | |||||| ||||||| |||||||| ||||| | || ||||||||||||||||||||||| ||||||||||||||| ||||||    
T  21486880 gtaaactcgactcgagaactcgtatgagtttagctaaaattaaaattatgtagaatttattatatgcatgacatatataagctaatataatattgtaaa 21486782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 107 - 205
Target Start/End: Original strand, 33496775 - 33496873
Alignment:
Q  107 gtaaactcgaatcgtaagctcgtacgagtttacctaaaattgaaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaa 205  Q
    ||||| |||| || ||| |||||||||||||| |||||||| |||||  ||| |||||||||| | |||||||||||||| ||||||||||| ||||||    
T  33496775 gtaaattcgactcataaactcgtacgagtttatctaaaattaaaattaaataaaatttattatttacatgacatatgtaaactaatataatattgtaaa 33496873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 125 - 205
Target Start/End: Complemental strand, 27149410 - 27149330
Alignment:
Q  125 ctcgtacgagtttacctaaaattgaaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaa 205  Q
    ||||||||||||||||||||||| |||||  ||  |||||||||| | |||||||||||||| ||||||||||| ||||||    
T  27149410 ctcgtacgagtttacctaaaatttaaattaaattaaatttattatttacatgacatatgtaaactaatataatattgtaaa 27149330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 171
Target Start/End: Complemental strand, 6269224 - 6269107
Alignment:
Q  53 gttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattgaaat 152  Q
    ||||| ||||||||||||||  | ||||| ||||||  || |||||||| | || |||||| || | |||| ||||||||||||||||||||||| ||||    
T  6269224 gttttacaactcgagagtttttctcaacttgttttat-tatgtaaactcaaatcataaacttgacttgtaaactcgtacgagtttacctaaaattaaaat 6269126  T
Q  153 tttatacaatttattatat 171  Q
    | |||| ||||||||||||    
T  6269125 tatataaaatttattatat 6269107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 135 - 205
Target Start/End: Complemental strand, 16710237 - 16710167
Alignment:
Q  135 tttacctaaaattgaaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaa 205  Q
    ||||||||||||| ||||| |||| ||||||||||||||| ||||||| |||||||||| |||| ||||||    
T  16710237 tttacctaaaattaaaattatataaaatttattatatgcaagacatatataagctaataaaatattgtaaa 16710167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 135 - 205
Target Start/End: Complemental strand, 17684473 - 17684403
Alignment:
Q  135 tttacctaaaattgaaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaa 205  Q
    ||||||||||||| ||||| |||| ||||||||||||||| ||||||| |||||||||| |||| ||||||    
T  17684473 tttacctaaaattaaaattatataaaatttattatatgcaagacatatataagctaataaaatattgtaaa 17684403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 49 - 205
Target Start/End: Complemental strand, 23017772 - 23017629
Alignment:
Q  49 caaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattg 148  Q
    ||||||||| ||||||||||||||||| |||||||||||  |||| ||||||||||| |  ||             ||||||  |||||||||||||||     
T  23017772 caaggttttacaactcgagagtttacctcaactcgttttgactagataaactcgacttgagaa-------------ctcgtataagtttacctaaaatta 23017686  T
Q  149 aaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaa 205  Q
    ||||| |||| |||||||||||||||| ||| || |||| |||||||||| ||||||    
T  23017685 aaattatataaaatttattatatgcattacagatataagttaatataatattgtaaa 23017629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 205
Target Start/End: Original strand, 26201210 - 26201307
Alignment:
Q  108 taaactcgaatcgtaagctcgtacgagtttacctaaaattgaaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaa 205  Q
    ||||||||| |||  | ||||||| ||||||  ||||||| |||||  ||| |||||||||| | |||||||||||||| ||||||||||| ||||||    
T  26201210 taaactcgactcgagaactcgtacaagtttaggtaaaattaaaattaaataaaatttattatttacatgacatatgtaatctaatataatattgtaaa 26201307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 92
Target Start/End: Complemental strand, 16710277 - 16710230
Alignment:
Q  45 aaatcaaggttttgcaactcgagagtttaccgcaactcgttttaccta 92  Q
    ||||||||||||||||||||||||||||||  ||||| ||||||||||    
T  16710277 aaatcaaggttttgcaactcgagagtttacttcaacttgttttaccta 16710230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 92
Target Start/End: Complemental strand, 17684513 - 17684466
Alignment:
Q  45 aaatcaaggttttgcaactcgagagtttaccgcaactcgttttaccta 92  Q
    ||||||||||||||||||||||||||||||  ||||| ||||||||||    
T  17684513 aaatcaaggttttgcaactcgagagtttacttcaacttgttttaccta 17684466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 160 - 198
Target Start/End: Complemental strand, 31446033 - 31445995
Alignment:
Q  160 aatttattatatgcatgacatatgtaagctaatataata 198  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  31446033 aatttattatatgcatgacatatataagctaatataata 31445995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 196
Target Start/End: Complemental strand, 31175256 - 31175167
Alignment:
Q  107 gtaaactcgaatcgtaagctcgtacgagtttacctaaaattgaaattttatacaatttattatatgcatgacatatgtaagctaatataa 196  Q
    ||||| |||| ||||||  ||||| ||||| |  ||||||  ||||| |||| |||||||||||| ||| ||||||||||||||||||||    
T  31175256 gtaaaatcgattcgtaaattcgtaggagttaatataaaatgaaaattatataaaatttattatatacatcacatatgtaagctaatataa 31175167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 128
Target Start/End: Complemental strand, 14742192 - 14742158
Alignment:
Q  94 gtaaactcgactcgtaaactcgaatcgtaagctcg 128  Q
    |||||||||||||||||||||||||||||| ||||    
T  14742192 gtaaactcgactcgtaaactcgaatcgtaaactcg 14742158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 31175303 - 31175239
Alignment:
Q  46 aatcaaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaa 111  Q
    ||||||||||||  || ||||||||||||| ||||||||||||  |||||||| |||| |||||||    
T  31175303 aatcaaggtttta-aattcgagagtttacctcaactcgttttatttaggtaaaatcgattcgtaaa 31175239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 48 - 211
Target Start/End: Original strand, 37797458 - 37797620
Alignment:
Q  48 tcaaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaatt 147  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  37797458 tcaaggttttgcaactcgagagtttacctcaactcgttttacctagataaactcgactcgtaaactcgaatcataaactcgtacgagtttacctaaaatt 37797557  T
Q  148 gaaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaaaagatc 211  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  37797558 gaaattttatacaatttattatatgcat-acatatgtaagctaatataatactgtaaaaagatc 37797620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 53 - 211
Target Start/End: Original strand, 28622512 - 28622669
Alignment:
Q  53 gttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattgaaat 152  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  28622512 gttttgcaactcgagagtttacctcaactcgttttagctaggtaaactcgactcgtaaactcgaatcgtaaactcgtacgagtttacctaaaattgaaat 28622611  T
Q  153 tttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaaaagatc 211  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||    
T  28622612 tttatacaatttattatatgcat-acatatgtaagctgatataataccgtaaaaagatc 28622669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 48 - 211
Target Start/End: Original strand, 7124227 - 7124377
Alignment:
Q  48 tcaaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaatt 147  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||             ||||||||||||| |||| ||||||||||||||||||    
T  7124227 tcaaggttttgcaactcgaaagtttacctcaactcgttttacctaggtaa-------------actcgaatcgtaaactcgcacgagtttacctaaaatt 7124313  T
Q  148 gaaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaaaagatc 211  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7124314 gaaattttatacaatttattatatgcatgacatatataagctaatataatactgtaaaaagatc 7124377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 49 - 211
Target Start/End: Original strand, 5650129 - 5650278
Alignment:
Q  49 caaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattg 148  Q
    ||||||||| | |||| |||||||||| |||||||||||||||||||||||||||||| ||||||||             ||||||||||||||||||||    
T  5650129 caaggttttactactcaagagtttacctcaactcgttttacctaggtaaactcgactcataaactcg-------------tacgagtttacctaaaattg 5650215  T
Q  149 aaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaaaagatc 211  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  5650216 aaattgtatacaatttattatatgaatgacatatgtaagctaatataatattgtaaaaagatc 5650278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 53 - 194
Target Start/End: Complemental strand, 25869454 - 25869313
Alignment:
Q  53 gttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattgaaat 152  Q
    ||||| ||||||||||||||||| |||||||||||| ||| |||||||||| |||||||||||| ||||||  |||||||||||||||||||||| ||||    
T  25869454 gttttacaactcgagagtttacctcaactcgttttagctatgtaaactcgaatcgtaaactcgactcgtaaattcgtacgagtttacctaaaattaaaat 25869355  T
Q  153 tttatacaatttattatatgcatgacatatgtaagctaatat 194  Q
    | |||| ||||||||||||  ||  |||||||||||||||||    
T  25869354 tatataaaatttattatatatatagcatatgtaagctaatat 25869313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 49 - 147
Target Start/End: Original strand, 32236888 - 32236986
Alignment:
Q  49 caaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaatt 147  Q
    ||||||||| || |||||||||||||| |||||||||||| ||| |||||||||| |||||||||||| |||||| |||||||||||||||||||||||    
T  32236888 caaggttttacacctcgagagtttacctcaactcgttttaactatgtaaactcgaatcgtaaactcgactcgtaaactcgtacgagtttacctaaaatt 32236986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 49 - 205
Target Start/End: Complemental strand, 35702012 - 35701869
Alignment:
Q  49 caaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattg 148  Q
    ||||||||| ||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||| |             |||||||||||||||||||     
T  35702012 caaggttttacaactcgagagtttacctcaactcgttttacttaggtaaactcaactcgtaaacttg-------------tacgagtttacctaaaatta 35701926  T
Q  149 aaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaa 205  Q
    ||||| || | || ||||||||| |||||||||| ||||||||||||||||||||||    
T  35701925 aaattataaaaaaattattatatacatgacatatataagctaatataatactgtaaa 35701869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 50 - 205
Target Start/End: Original strand, 29716216 - 29716358
Alignment:
Q  50 aaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattga 149  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||  | | ||             ||||||||||||||||||| |    
T  29716216 aaggttttgcaactcgagagtttacctcaactcgttttgcctaggtaaactcgactcgagatcccg-------------tacgagtttacctaaaattaa 29716302  T
Q  150 aattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaa 205  Q
    |||| |||| ||||||||||||| ||||||||| ||||||||||||||| ||||||    
T  29716303 aattgtataaaatttattatatggatgacatatataagctaatataatattgtaaa 29716358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 107 - 198
Target Start/End: Complemental strand, 31914112 - 31914021
Alignment:
Q  107 gtaaactcgaatcgtaagctcgtacgagtttacctaaaattgaaattttatacaatttattatatgcatgacatatgtaagctaatataata 198  Q
    ||||||||||||| ||| ||||||||||| ||||||||||| ||||| |||| |||||||||||| ||||| ||||||||||||||||||||    
T  31914112 gtaaactcgaatcataaactcgtacgagtatacctaaaattaaaattatataaaatttattatatacatgatatatgtaagctaatataata 31914021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 125 - 196
Target Start/End: Complemental strand, 3032829 - 3032758
Alignment:
Q  125 ctcgtacgagtttacctaaaattgaaattttatacaatttattatatgcatgacatatgtaagctaatataa 196  Q
    ||||||||||||||||||||||  ||||| |||| |||||||||||| ||||||||||||||||||||||||    
T  3032829 ctcgtacgagtttacctaaaatcaaaattatataaaatttattatatacatgacatatgtaagctaatataa 3032758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 107 - 193
Target Start/End: Original strand, 33892307 - 33892393
Alignment:
Q  107 gtaaactcgaatcgtaagctcgtacgagtttacctaaaattgaaattttatacaatttattatatgcatgacatatgtaagctaata 193  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||| |||| ||||||||||||  ||  ||||| ||||||||||    
T  33892307 gtaaactcgaatcgtaaactcgtacgagtttacctaaaattaaaattatataaaatttattatatatatagcatatttaagctaata 33892393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 128 - 205
Target Start/End: Original strand, 4840884 - 4840961
Alignment:
Q  128 gtacgagtttacctaaaattgaaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaa 205  Q
    ||||||||||| |||||||| ||||| ||||||||||||||||| ||||| |||||| ||||||||||||| ||||||    
T  4840884 gtacgagtttaactaaaattaaaattatatacaatttattatatacatgatatatgtgagctaatataatattgtaaa 4840961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 60 - 181
Target Start/End: Original strand, 36195679 - 36195800
Alignment:
Q  60 aactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattgaaattttatac 159  Q
    ||||||| |||||||| ||||| ||||||| ||  ||||||||| |||||||||||| | ||||  || ||| |||||  |||||||| ||||| ||||     
T  36195679 aactcgaaagtttacctcaacttgttttacgtatataaactcgaatcgtaaactcgacttgtaaattcatacaagtttgtctaaaattaaaattatataa 36195778  T
Q  160 aatttattatatgcatgacata 181  Q
    |||||||||||| |||||||||    
T  36195779 aatttattatatacatgacata 36195800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 34910224 - 34910160
Alignment:
Q  107 gtaaactcgaatcgtaagctcgtacgagtttacctaaaattgaaattttatacaatttattatat 171  Q
    ||||||||||||||||| |||||||||||||| |||||||| ||||| |||| ||||||||||||    
T  34910224 gtaaactcgaatcgtaaactcgtacgagtttatctaaaattaaaattatataaaatttattatat 34910160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 111 - 198
Target Start/End: Complemental strand, 16801314 - 16801227
Alignment:
Q  111 actcgaatcgtaagctcgtacgagtttacctaaaattgaaattttatacaatttattatatgcatgacatatgtaagctaatataata 198  Q
    ||||||||||| | ||||||| ||| || |||||||| ||||| |||| |||||| ||||||||| | ||||||||||||||||||||    
T  16801314 actcgaatcgtgaactcgtacaagtgtatctaaaattaaaattatataaaatttactatatgcattatatatgtaagctaatataata 16801227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 147
Target Start/End: Original strand, 16497276 - 16497370
Alignment:
Q  53 gttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaatt 147  Q
    ||||| |||||| |||||||  | |||||||||||| ||| |||||||  | |||||||||||| || ||| |||||||||||||||||||||||    
T  16497276 gttttacaactcaagagtttgtctcaactcgttttatctaagtaaactaaaatcgtaaactcgactcataaactcgtacgagtttacctaaaatt 16497370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 205
Target Start/End: Original strand, 16548590 - 16548670
Alignment:
Q  125 ctcgtacgagtttacctaaaattgaaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaa 205  Q
    ||||||||| ||||||||||||| |||||  ||| |||||||||| | |||| ||||||||| ||||||||||| ||||||    
T  16548590 ctcgtacgaatttacctaaaattaaaattaaataaaatttattatttacatggcatatgtaaactaatataatattgtaaa 16548670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 108 - 171
Target Start/End: Original strand, 2674555 - 2674618
Alignment:
Q  108 taaactcgaatcgtaagctcgtacgagtttacctaaaattgaaattttatacaatttattatat 171  Q
    |||| ||||||||||| |||||||||||||| |||||||| ||||| |||| ||||||||||||    
T  2674555 taaattcgaatcgtaaactcgtacgagtttatctaaaattaaaattatataaaatttattatat 2674618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 48 - 111
Target Start/End: Original strand, 21238202 - 21238265
Alignment:
Q  48 tcaaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaa 111  Q
    |||||||||| ||||||||||||||||| |||||||||||| ||| ||||||| || |||||||    
T  21238202 tcaaggttttacaactcgagagtttacctcaactcgttttaactatgtaaacttgaatcgtaaa 21238265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 107 - 194
Target Start/End: Original strand, 21238248 - 21238334
Alignment:
Q  107 gtaaactcgaatcgtaagctcgtacgagtttacctaaaattgaaattttatacaatttattatatgcatgacatatgtaagctaatat 194  Q
    ||||||| |||||||||  |||||||||||||||||||||| ||||| |||| ||||||||||||  ||  |||||||||| ||||||    
T  21238248 gtaaacttgaatcgtaaaatcgtacgagtttacctaaaattaaaattgtata-aatttattatatatatagcatatgtaagttaatat 21238334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 59 - 113
Target Start/End: Complemental strand, 36180276 - 36180222
Alignment:
Q  59 caactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaact 113  Q
    ||||||||||||||||| |||||| |||||| ||||||||||| |||||||||||    
T  36180276 caactcgagagtttacctcaactcattttacttaggtaaactcaactcgtaaact 36180222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 51 - 115
Target Start/End: Complemental strand, 34910267 - 34910203
Alignment:
Q  51 aggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcg 115  Q
    ||||||| ||| ||||||||||||| ||||||||||||  || |||||||||| |||||||||||    
T  34910267 aggttttacaattcgagagtttacctcaactcgttttagttatgtaaactcgaatcgtaaactcg 34910203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 205
Target Start/End: Complemental strand, 29759337 - 29759259
Alignment:
Q  126 tcgtacgagtttacctaaaattgaaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaa 205  Q
    ||||||||||||| |||||||| |||||  ||| |||||||||| |  ||||||||||||| ||||||||||| ||||||    
T  29759337 tcgtacgagtttatctaaaattaaaattaaata-aatttattatttaaatgacatatgtaaactaatataatattgtaaa 29759259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 107
Target Start/End: Complemental strand, 29759402 - 29759343
Alignment:
Q  48 tcaaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcg 107  Q
    |||||||||| |||||||| |||||||| |||||| |||| | |||||||||||||||||    
T  29759402 tcaaggttttacaactcgatagtttacctcaactcattttgcttaggtaaactcgactcg 29759343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 88
Target Start/End: Original strand, 33892262 - 33892301
Alignment:
Q  49 caaggttttgcaactcgagagtttaccgcaactcgtttta 88  Q
    ||||||||| ||||||||||||||||| ||||||||||||    
T  33892262 caaggttttacaactcgagagtttacctcaactcgtttta 33892301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 115
Target Start/End: Original strand, 2674509 - 2674575
Alignment:
Q  49 caaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcg 115  Q
    |||| |||| ||| ||||||||||||| |||||||||||| |||  |||| |||| |||||||||||    
T  2674509 caagattttacaattcgagagtttacctcaactcgttttagctatataaattcgaatcgtaaactcg 2674575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 92
Target Start/End: Complemental strand, 31914152 - 31914114
Alignment:
Q  54 ttttgcaactcgagagtttaccgcaactcgttttaccta 92  Q
    |||| ||||||||||||||||| ||||||||||||||||    
T  31914152 ttttacaactcgagagtttacctcaactcgttttaccta 31914114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 205
Target Start/End: Complemental strand, 36180241 - 36180143
Alignment:
Q  107 gtaaactcgaatcgtaagctcgtacgagtttacctaaaattgaaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaa 205  Q
    |||||||| | |||||| || ||| || |||| |||||||| ||||| |||| ||||||| |||| |||||  || || ||||||||||||| ||||||    
T  36180241 gtaaactcaactcgtaaacttgtatgattttatctaaaattaaaattatataaaatttatcatatacatgatgtacgtgagctaatataatattgtaaa 36180143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 131; Significance: 4e-68; HSPs: 36)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 53 - 211
Target Start/End: Original strand, 18899248 - 18899405
Alignment:
Q  53 gttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattgaaat 152  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  18899248 gttttgcaactcgagagtttacctcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaaactcgtacgagtttacttaaaattgaaat 18899347  T
Q  153 tttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaaaagatc 211  Q
    |||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||    
T  18899348 tttatacaatttattatatgtat-acatatgtaaactaatataatactgtaaaaagatc 18899405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 51 - 205
Target Start/End: Original strand, 18726919 - 18727073
Alignment:
Q  51 aggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattgaa 150  Q
    ||||||||||||| ||||||||||| ||||||||||| | ||||||||||||| |||||||||||| |||  | ||||||||||||||||||||||| ||    
T  18726919 aggttttgcaacttgagagtttacctcaactcgttttgcttaggtaaactcgattcgtaaactcgactcgagaactcgtacgagtttacctaaaattaaa 18727018  T
Q  151 attttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaa 205  Q
    ||| |||| ||||||||||||| |||||| || ||||||||||||||| ||||||    
T  18727019 attatataaaatttattatatggatgacaaatataagctaatataatattgtaaa 18727073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 132 - 211
Target Start/End: Complemental strand, 15224714 - 15224635
Alignment:
Q  132 gagtttacctaaaattgaaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaaaagatc 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  15224714 gagtttacctaaaattgaaattttatacaatttattatatgcatgacatatgtaagctaatataatattgtaaaaagatc 15224635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 48 - 171
Target Start/End: Complemental strand, 13908752 - 13908629
Alignment:
Q  48 tcaaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaatt 147  Q
    |||||||||| ||| ||||||||||||| ||||||||||||  || |||||||||| |||||||||||| ||||||  ||||||||||||||||||||||    
T  13908752 tcaaggttttacaattcgagagtttacctcaactcgttttaattatgtaaactcgaatcgtaaactcgactcgtaaattcgtacgagtttacctaaaatt 13908653  T
Q  148 gaaattttatacaatttattatat 171  Q
     ||||| |||| ||||||||||||    
T  13908652 aaaattatataaaatttattatat 13908629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 49 - 195
Target Start/End: Original strand, 35403912 - 35404059
Alignment:
Q  49 caaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaatt- 147  Q
    |||| |||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||| | || |||  | ||||| |||||||||||||||||     
T  35403912 caagattttgcaacttgagagtttacctcaactcgttttacataggtaaactcgactcgtaaatttgactcgagaactcgtgcgagtttacctaaaatta 35404011  T
Q  148 gaaattttatacaatttattatatgcatgacatatgtaagctaatata 195  Q
     |||||  ||| ||||||||||||| |||| ||||  |||||||||||    
T  35404012 aaaattacataaaatttattatatggatgaaatatacaagctaatata 35404059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 45 - 205
Target Start/End: Complemental strand, 42242591 - 42242444
Alignment:
Q  45 aaatcaaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaa 144  Q
    ||||||| |||||| |||||||||||||||| ||||||| ||| |||||||||||||||||||  ||||||             |||||||| |||||||    
T  42242591 aaatcaaagttttgaaactcgagagtttacctcaactcgctttgcctaggtaaactcgactcgagaactcg-------------tacgagttgacctaaa 42242505  T
Q  145 attgaaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaa 205  Q
    ||| ||||| | || ||||||||||||||||||||||| ||||||||||||||| ||||||    
T  42242504 attaaaattatgtaaaatttattatatgcatgacatatataagctaatataatattgtaaa 42242444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 49 - 205
Target Start/End: Original strand, 31846479 - 31846622
Alignment:
Q  49 caaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattg 148  Q
    ||||||||||||||||||||||||| | |||||| |||| ||||||||||||||||| |  ||||||             |||||||||||||||| ||     
T  31846479 caaggttttgcaactcgagagtttatctcaactcattttgcctaggtaaactcgacttgagaactcg-------------tacgagtttacctaaattta 31846565  T
Q  149 aaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaa 205  Q
    ||||| |||| ||||||||||||||||||||||| ||| ||||||||||| ||||||    
T  31846566 aaattatataaaatttattatatgcatgacatatataaactaatataatattgtaaa 31846622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 107 - 194
Target Start/End: Original strand, 45160654 - 45160740
Alignment:
Q  107 gtaaactcgaatcgtaagctcgtacgagtttacctaaaattgaaattttatacaatttattatatgcatgacatatgtaagctaatat 194  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||| |||| ||||||||||||  || ||||||||||||||||||    
T  45160654 gtaaactcgaatcgtaaactcgtacgagtttacctaaaatt-aaattatataaaatttattatatatataacatatgtaagctaatat 45160740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 128 - 205
Target Start/End: Original strand, 38295088 - 38295165
Alignment:
Q  128 gtacgagtttacctaaaattgaaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaa 205  Q
    |||||||||||||||||||| ||||| |||| |||||||||||||||||| |||| ||||||||| ||||| ||||||    
T  38295088 gtacgagtttacctaaaattaaaattatataaaatttattatatgcatgatatatataagctaatttaatattgtaaa 38295165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 105 - 205
Target Start/End: Complemental strand, 24026517 - 24026417
Alignment:
Q  105 tcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattgaaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaa 204  Q
    |||||||||||| |||||| | | |||||| ||||||||| || ||| | |||| |||||| ||||| ||||||||||||||||||| ||||||||||||    
T  24026517 tcgtaaactcgactcgtaaacccatacgagattacctaaagttaaaaatatataaaatttactatatacatgacatatgtaagctaacataatactgtaa 24026418  T
Q  205 a 205  Q
    |    
T  24026417 a 24026417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 50 - 165
Target Start/End: Complemental strand, 30851498 - 30851383
Alignment:
Q  50 aaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattga 149  Q
    |||||||||||| |||||| |||||| |||||| |||| | ||||||||||| ||| ||||| |||| |||  | |||||| |||||||||||||||| |    
T  30851498 aaggttttgcaattcgagaatttacctcaactctttttgcttaggtaaactctactggtaaagtcgactcgagaactcgtatgagtttacctaaaattaa 30851399  T
Q  150 aattttatacaattta 165  Q
    |||| |||| ||||||    
T  30851398 aattatataaaattta 30851383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 133 - 211
Target Start/End: Original strand, 43304659 - 43304737
Alignment:
Q  133 agtttacctaaaattgaaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaaaagatc 211  Q
    ||||||||||||||| ||||| |||| ||||||||||||||||||||| || || ||||||||||| |||||| |||||    
T  43304659 agtttacctaaaattaaaattctatataatttattatatgcatgacatttgcaaactaatataatattgtaaatagatc 43304737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 49 - 198
Target Start/End: Complemental strand, 28546481 - 28546333
Alignment:
Q  49 caaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattg 148  Q
    ||||| ||| ||| |||| |||||||||||| || ||||| ||| ||||| | || |||||||||||| ||||||  | |||| |||||||||||||||     
T  28546481 caaggatttacaattcgaaagtttaccgcaaatcattttatctatgtaaatttgaatcgtaaactcgactcgtaaaatagtac-agtttacctaaaatta 28546383  T
Q  149 aaattttatacaatttattatatgcatgacatatgtaagctaatataata 198  Q
    ||||| |||| |||||||||||| | | |||||  |||||||||| ||||    
T  28546382 aaattatataaaatttattatatacctaacatacataagctaatagaata 28546333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 125 - 205
Target Start/End: Complemental strand, 40830357 - 40830277
Alignment:
Q  125 ctcgtacgagtttacctaaaattgaaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaa 205  Q
    ||||||||| ||||||||||||| ||||| | || ||||||| ||||||||||||||| |||||| |||||||| ||||||    
T  40830357 ctcgtacgaatttacctaaaattaaaattatttaaaatttatgatatgcatgacatatataagctcatataatattgtaaa 40830277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 47 - 114
Target Start/End: Complemental strand, 33263549 - 33263482
Alignment:
Q  47 atcaaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactc 114  Q
    ||||||||||| ||||||||||||||||| ||||| |||||| ||| |||||||||| ||||||||||    
T  33263549 atcaaggttttacaactcgagagtttacctcaacttgttttagctatgtaaactcgaatcgtaaactc 33263482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 38411938 - 38411999
Alignment:
Q  54 ttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcg 115  Q
    |||| ||||||||||||||||| |||||||||||| ||| |||||||||| |||||||||||    
T  38411938 ttttacaactcgagagtttacctcaactcgttttagctatgtaaactcgaatcgtaaactcg 38411999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 107 - 175
Target Start/End: Complemental strand, 9731694 - 9731626
Alignment:
Q  107 gtaaactcgaatcgtaagctcgtacgagtttacctaaaattgaaattttatacaatttattatatgcat 175  Q
    |||||||||| |||  | ||||||||||||||||||||||| ||||| |||| ||||||||||||||||    
T  9731694 gtaaactcgactcgagaactcgtacgagtttacctaaaattaaaattatataaaatttattatatgcat 9731626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 205
Target Start/End: Complemental strand, 34342969 - 34342890
Alignment:
Q  125 ctcgtacgagtttacctaaaattgaaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaa 205  Q
    ||||||||| |||||||||| || ||||| |||| |||||||||||| |||||||||| ||| ||||||||||| ||||||    
T  34342969 ctcgtacgaatttacctaaa-ttaaaattatataaaatttattatatacatgacatatataaactaatataatattgtaaa 34342890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 65 - 107
Target Start/End: Original strand, 32241815 - 32241857
Alignment:
Q  65 gagagtttaccgcaactcgttttacctaggtaaactcgactcg 107  Q
    ||||||||||| |||||||||||||||||||||||||||||||    
T  32241815 gagagtttacctcaactcgttttacctaggtaaactcgactcg 32241857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 100 - 205
Target Start/End: Complemental strand, 37790435 - 37790332
Alignment:
Q  100 tcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattgaaattttatacaatttattatatgcatgacatatgtaagctaatataatac 199  Q
    ||||||| ||||||||| ||||||  |||||||||||||| ||||| | ||||| |||  || |||||||||  ||||||||| ||  ||||||||||||    
T  37790435 tcgactcataaactcgactcgtaaaatcgtacgagtttacgtaaaagtaaaattatattaaaattattatatagatgacatatata--ctaatataatac 37790338  T
Q  200 tgtaaa 205  Q
    ||||||    
T  37790337 tgtaaa 37790332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 12520367 - 12520314
Alignment:
Q  49 caaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcg 102  Q
    ||||||||||||||| ||||||||||| ||||||||||| ||||||||| ||||    
T  12520367 caaggttttgcaacttgagagtttacctcaactcgttttgcctaggtaagctcg 12520314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 194
Target Start/End: Complemental strand, 41979448 - 41979360
Alignment:
Q  108 taaactcgaatcgtaagctcgtacgagtttacctaaaattgaaattttatacaattta--ttatatgcatgacatatgtaagctaatat 194  Q
    |||| ||||||| ||| ||||||||||||||||||||||| ||||| |||| ||||||  ||||||  ||  |||||||||||||||||    
T  41979448 taaattcgaatcataaactcgtacgagtttacctaaaattaaaattatataaaatttattttatatatatagcatatgtaagctaatat 41979360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 107 - 147
Target Start/End: Original strand, 38411978 - 38412018
Alignment:
Q  107 gtaaactcgaatcgtaagctcgtacgagtttacctaaaatt 147  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  38411978 gtaaactcgaatcgtaaactcgtacgagtttacctaaaatt 38412018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 203
Target Start/End: Original strand, 37810300 - 37810363
Alignment:
Q  140 ctaaaattgaaattttatacaatttattatatgcatgacatatgtaagctaatataatactgta 203  Q
    |||||||| ||||| |||| |||||||||||  ||||||||||||| |||||||||||| ||||    
T  37810300 ctaaaattaaaattatataaaatttattatacacatgacatatgtatgctaatataatattgta 37810363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 126 - 196
Target Start/End: Complemental strand, 2104356 - 2104286
Alignment:
Q  126 tcgtacgagtttacctaaaattgaaattttatacaatttattatatgcatgacatatgtaagctaatataa 196  Q
    ||||||||||||| |||||||| ||||| ||||  |||||||||||   ||| ||||||||||||||||||    
T  2104356 tcgtacgagtttatctaaaattaaaattatataatatttattatatatgtgatatatgtaagctaatataa 2104286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 9731734 - 9731681
Alignment:
Q  54 ttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcg 107  Q
    |||| |||||||||||||||||  |||| ||||| |||||||||||||||||||    
T  9731734 ttttacaactcgagagtttaccttaacttgttttgcctaggtaaactcgactcg 9731681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 32643989 - 32643924
Alignment:
Q  50 aaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcg 115  Q
    |||||||| |||||||| |||||||| |||||  ||||||||||||||||| || | |||||||||    
T  32643989 aaggtttttcaactcgaaagtttacctcaacttcttttacctaggtaaacttgagttgtaaactcg 32643924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 106
Target Start/End: Complemental strand, 34343020 - 34342975
Alignment:
Q  61 actcgagagtttaccgcaactcgttttacctaggtaaactcgactc 106  Q
    ||||||||||||||| ||||||||||| | ||||||||||||||||    
T  34343020 actcgagagtttacctcaactcgttttgcttaggtaaactcgactc 34342975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 105
Target Start/End: Complemental strand, 40830415 - 40830364
Alignment:
Q  54 ttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgact 105  Q
    |||| ||||||||||||||||| ||||||||||| | || ||||||||||||    
T  40830415 ttttacaactcgagagtttacctcaactcgttttgcttaagtaaactcgact 40830364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 107
Target Start/End: Original strand, 2307860 - 2307926
Alignment:
Q  41 ctttaaatcaaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcg 107  Q
    |||| |||||||||||| ||||||||||||||| |  ||||  |||| | |||||||||||||||||    
T  2307860 cttttaatcaaggttttacaactcgagagtttatcttaacttattttgcttaggtaaactcgactcg 2307926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 92
Target Start/End: Complemental strand, 41979496 - 41979451
Alignment:
Q  47 atcaaggttttgcaactcgagagtttaccgcaactcgttttaccta 92  Q
    ||||||||||| ||||| ||||||||||| |||||||||||| |||    
T  41979496 atcaaggttttacaacttgagagtttacctcaactcgttttaacta 41979451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 197
Target Start/End: Original strand, 3857923 - 3857995
Alignment:
Q  125 ctcgtacgagtttacctaaaattgaaattttatacaatttattatatgcatgacatatgtaagctaatataat 197  Q
    ||||||| ||||||||||||||| ||||   ||| |||| ||||| | ||||||||||| || ||||||||||    
T  3857923 ctcgtactagtttacctaaaattaaaatgaaataaaattcattatttacatgacatatgaaaactaatataat 3857995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 147
Target Start/End: Original strand, 13327677 - 13327717
Alignment:
Q  107 gtaaactcgaatcgtaagctcgtacgagtttacctaaaatt 147  Q
    |||| ||||| |||||| |||||||||||||||||||||||    
T  13327677 gtaatctcgactcgtaaactcgtacgagtttacctaaaatt 13327717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 147
Target Start/End: Complemental strand, 33263502 - 33263462
Alignment:
Q  107 gtaaactcgaatcgtaagctcgtacgagtttacctaaaatt 147  Q
    ||||||||||||||||| ||| ||||| |||||||||||||    
T  33263502 gtaaactcgaatcgtaaactcatacgaatttacctaaaatt 33263462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 196
Target Start/End: Original strand, 38147429 - 38147485
Alignment:
Q  140 ctaaaattgaaattttatacaatttattatatgcatgacatatgtaagctaatataa 196  Q
    |||||||| ||||| |||| |||||||||||| ||||||| || ||| |||||||||    
T  38147429 ctaaaatttaaattatataaaatttattatatacatgacaaatataaactaatataa 38147485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 103
Target Start/End: Original strand, 45160607 - 45160663
Alignment:
Q  47 atcaaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcga 103  Q
    ||||| ||||| |||||||||| |||||| |||||| ||||| ||| ||||||||||    
T  45160607 atcaaagttttacaactcgagaatttacctcaactcattttagctatgtaaactcga 45160663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 47)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 50 - 211
Target Start/End: Complemental strand, 8084950 - 8084790
Alignment:
Q  50 aaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattga 149  Q
    |||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  8084950 aaggttttgcaactcgagagtttacctcaactcgttttatttaggtaaactcgactcgtaaactcgaatcgtaaactcgtacgagtttacctaaaattga 8084851  T
Q  150 aattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaaaagatc 211  Q
    |||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  8084850 aattttatacaacttattatatgcat-acatatgtaagctaatataatactataaaaagatc 8084790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 49 - 206
Target Start/End: Original strand, 42936922 - 42937079
Alignment:
Q  49 caaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattg 148  Q
    ||||||||||||||||||||||||||| ||| ||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  42936922 caaggttttgcaactcgagagtttacctcaattcgttttacttagataaactcgactcgtaaactcgaatcgtaaactcgtacgagtctacctaaaattg 42937021  T
Q  149 aaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaaa 206  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  42937022 aaattttatacaatttattatatgcatggcatatgtaaactaatataatactgtaaaa 42937079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 107 - 211
Target Start/End: Complemental strand, 29469865 - 29469762
Alignment:
Q  107 gtaaactcgaatcgtaagctcgtacgagtttacctaaaattgaaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaaa 206  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  29469865 gtaaactcgactcgtaaactcgtacgagtttacctaaaattgaaattttatacaatttattatatgcat-acatatgtaagctaatataatactgtaaaa 29469767  T
Q  207 agatc 211  Q
    |||||    
T  29469766 agatc 29469762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 46 - 211
Target Start/End: Original strand, 23670914 - 23671066
Alignment:
Q  46 aatcaaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaa 145  Q
    |||||||||||| ||||||||||||||||| |||||| |||||||||  ||||||||||||||||||||              |||||||||||||| ||    
T  23670914 aatcaaggttttacaactcgagagtttacctcaactcattttacctatataaactcgactcgtaaactca-------------tacgagtttacctagaa 23671000  T
Q  146 ttgaaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaaaagatc 211  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  23671001 ttgaaattttatacaatttattatatccatgacatatgtaagctaatataatattgtaaaaagatc 23671066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 49 - 205
Target Start/End: Original strand, 41206719 - 41206874
Alignment:
Q  49 caaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattg 148  Q
    ||||||||| |||||| |||||||||| |||||||||||||||||||||| || ||||| |||| ||| |||  | ||||||||||||||| ||| |||     
T  41206719 caaggttttacaactcaagagtttacctcaactcgttttacctaggtaaaatcaactcgaaaac-cgactcgataactcgtacgagtttacttaatatta 41206817  T
Q  149 aaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaa 205  Q
    ||||| | ||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  41206818 aaattatgtacaatttattatatacatgacatatgtaagctaatataatattgtaaa 41206874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 45 - 205
Target Start/End: Original strand, 53573636 - 53573796
Alignment:
Q  45 aaatcaaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaa 144  Q
    ||||||| ||||| ||||||||||||||||| |||||| |||||| | |  ||||||||||||||||||||| |    | |||||||||||||||||| |    
T  53573636 aaatcaaagttttacaactcgagagtttacctcaactcattttacttggacaaactcgactcgtaaactcgacttaagaactcgtacgagtttacctaga 53573735  T
Q  145 attgaaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaa 205  Q
    | | ||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  53573736 aataaaattatatacaatttattatatgcatgacatatgtaaactaatataatattgtaaa 53573796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 48 - 171
Target Start/End: Complemental strand, 54561902 - 54561780
Alignment:
Q  48 tcaaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaatt 147  Q
    |||||||||| ||||||||||||||||| |||||||||||| ||| |||||||||| |||||||||||| |||||| |||||||||||||||||||||||    
T  54561902 tcaaggttttacaactcgagagtttacctcaactcgttttagctatgtaaactcgaatcgtaaactcgactcgtaaactcgtacgagtttacctaaaatt 54561803  T
Q  148 gaaattttatacaatttattatat 171  Q
     ||||| |||| ||||||||||||    
T  54561802 -aaattatataaaatttattatat 54561780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 54 - 205
Target Start/End: Complemental strand, 872289 - 872138
Alignment:
Q  54 ttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattgaaatt 153  Q
    |||| |||||| |||||||||| |||||||||||  ||||||||||||||||||||||||||| |||  | ||||||||||||||||||||||| |||||    
T  872289 ttttacaactcaagagtttacctcaactcgttttgtctaggtaaactcgactcgtaaactcgactcgagaactcgtacgagtttacctaaaattaaaatt 872190  T
Q  154 ttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaa 205  Q
      | | | |||||||| | ||||| |||||||| ||||||||||| ||||||    
T  872189 aaaaaaattttattatttacatgagatatgtaaactaatataatattgtaaa 872138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 49 - 182
Target Start/End: Original strand, 4511358 - 4511491
Alignment:
Q  49 caaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattg 148  Q
    ||||||||||||||||||||||||||| |||||| ||||  ||||||||| | || |||||||||||  | |  |  ||||||||||||||||||||||     
T  4511358 caaggttttgcaactcgagagtttacctcaactctttttgactaggtaaatttgagtcgtaaactcgtcttgagaaatcgtacgagtttacctaaaatta 4511457  T
Q  149 aaattttatacaatttattatatgcatgacatat 182  Q
    ||||| |||| |||||| ||||||||||||||||    
T  4511458 aaattatataaaatttactatatgcatgacatat 4511491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 53 - 170
Target Start/End: Original strand, 29965839 - 29965956
Alignment:
Q  53 gttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattgaaat 152  Q
    ||||| |||||||| |||||||| |||||||||||| ||| |||||||| | |||||| ||||| |||||| || |||||||||||||||||||| ||||    
T  29965839 gttttacaactcgaaagtttacctcaactcgttttagctatgtaaactcaaatcgtaatctcgactcgtaaactagtacgagtttacctaaaattaaaat 29965938  T
Q  153 tttatacaatttattata 170  Q
    | |||| |||||||||||    
T  29965939 tatataaaatttattata 29965956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 49 - 205
Target Start/End: Original strand, 24965804 - 24965946
Alignment:
Q  49 caaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattg 148  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  ||             ||| |||||||||| ||||||||     
T  24965804 caaggttttgcaactcgagagtttacctcaactcgttttacctaggtaaactcgactcgagaa-------------ctcatacgagtttatctaaaatta 24965890  T
Q  149 aaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaa 205  Q
    ||||  |||| ||||||||||||||||||||||| | ||||||||||||| ||||||    
T  24965891 aaataatataaaatttattatatgcatgacatatat-agctaatataatattgtaaa 24965946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 49 - 205
Target Start/End: Original strand, 29509374 - 29509517
Alignment:
Q  49 caaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattg 148  Q
    ||||||||||||||||||||||||||| |||||  ||||  ||||||||||||||||||  ||||||             |||||||||||||||||||     
T  29509374 caaggttttgcaactcgagagtttacctcaactaattttgtctaggtaaactcgactcgagaactcg-------------tacgagtttacctaaaatta 29509460  T
Q  149 aaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaa 205  Q
    ||||| |||  ||||||||||||||| |||||||||||||||||||| || ||||||    
T  29509461 aaattatattaaatttattatatgcaagacatatgtaagctaatatattattgtaaa 29509517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 107 - 204
Target Start/End: Original strand, 26490634 - 26490731
Alignment:
Q  107 gtaaactcgaatcgtaagctcgtacgagtttacctaaaattgaaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaa 204  Q
    |||||||||| |||  | ||| ||||||||||||||||||| ||||| |||| | ||||||||||||||||||||| ||||||||||| ||| |||||    
T  26490634 gtaaactcgattcgagaactcatacgagtttacctaaaattaaaattatataaagtttattatatgcatgacatatataagctaatatgatattgtaa 26490731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 107 - 171
Target Start/End: Original strand, 8562549 - 8562613
Alignment:
Q  107 gtaaactcgaatcgtaagctcgtacgagtttacctaaaattgaaattttatacaatttattatat 171  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||| |||| ||||||||||||    
T  8562549 gtaaactcgaatcgtaaactcgtacgagtttacctaaaattaaaattatataaaatttattatat 8562613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 49 - 205
Target Start/End: Complemental strand, 32890665 - 32890522
Alignment:
Q  49 caaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattg 148  Q
    ||||||||||||||||||||||||||| |||||||||||   ||||||||||||||| |  ||||||             |||||||||||||||||||     
T  32890665 caaggttttgcaactcgagagtttacctcaactcgttttgtttaggtaaactcgacttgataactcg-------------tacgagtttacctaaaatta 32890579  T
Q  149 aaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaa 205  Q
    ||||| | |  ||||||||||||||| || ||||||||||||||||| || ||||||    
T  32890578 aaattattttaaatttattatatgcaagatatatgtaagctaatatattattgtaaa 32890522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 47 - 115
Target Start/End: Complemental strand, 40163407 - 40163339
Alignment:
Q  47 atcaaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcg 115  Q
    ||||||||||| ||||||||||||||||| |||||||||||| ||| |||||||||| |||||||||||    
T  40163407 atcaaggttttacaactcgagagtttacctcaactcgttttagctatgtaaactcgaatcgtaaactcg 40163339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 107 - 194
Target Start/End: Complemental strand, 25014075 - 25013988
Alignment:
Q  107 gtaaactcgaatcgtaagctcgtacgagtttacctaaaattgaaattttatacaatttattatatgcatgacatatgtaagctaatat 194  Q
    ||||||| |||| |||| ||||||||||||||||||||||| ||||| |||| ||||||||||||  || |||||| |||||||||||    
T  25014075 gtaaacttgaattgtaaactcgtacgagtttacctaaaattaaaattatataaaatttattatatatataacatatttaagctaatat 25013988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 107 - 182
Target Start/End: Complemental strand, 33141067 - 33140992
Alignment:
Q  107 gtaaactcgaatcgtaagctcgtacgagtttacctaaaattgaaattttatacaatttattatatgcatgacatat 182  Q
    |||||||||| |||  | ||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||    
T  33141067 gtaaactcgactcgagaactcgtacgagtttacctaaaattaaaattatataaaatttattatatgcatgacatat 33140992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 49 - 115
Target Start/End: Original strand, 40487063 - 40487129
Alignment:
Q  49 caaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcg 115  Q
    ||||||||| ||||||||||||||||| |||||||||||| ||| |||||||||| |||||||||||    
T  40487063 caaggttttacaactcgagagtttacctcaactcgttttagctatgtaaactcgaatcgtaaactcg 40487129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 53 - 115
Target Start/End: Original strand, 41469640 - 41469702
Alignment:
Q  53 gttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcg 115  Q
    ||||| ||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||    
T  41469640 gttttacaactcgagagtttacctcaactcgttttagctatgtaaactcgactcgtaaactcg 41469702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 49 - 211
Target Start/End: Complemental strand, 50517882 - 50517733
Alignment:
Q  49 caaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattg 148  Q
    |||||||||||||||||| |||||||| |||||| |||| |||||||||||||||||||  ||             ||| || ||||||| ||||||||     
T  50517882 caaggttttgcaactcgaaagtttacctcaactcattttgcctaggtaaactcgactcgagaa-------------ctcatatgagtttatctaaaatta 50517796  T
Q  149 aaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaaaagatc 211  Q
    ||||| |||| ||||||| ||||||| ||||||| ||||||||||||||| | |||| |||||    
T  50517795 aaattatataaaatttatcatatgcaagacatatataagctaatataatattataaatagatc 50517733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 49 - 115
Target Start/End: Original strand, 56423416 - 56423482
Alignment:
Q  49 caaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcg 115  Q
    ||||||||| ||||||||||||||||| |||||||||||| ||| |||||||||| |||||||||||    
T  56423416 caaggttttacaactcgagagtttacctcaactcgttttagctatgtaaactcgaatcgtaaactcg 56423482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 46 - 115
Target Start/End: Original strand, 6486754 - 6486823
Alignment:
Q  46 aatcaaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcg 115  Q
    |||||||||||| ||||||||||||||||| |||||||||||| ||| |||||||||| || ||||||||    
T  6486754 aatcaaggttttacaactcgagagtttacctcaactcgttttagctatgtaaactcgaatcataaactcg 6486823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 107 - 171
Target Start/End: Original strand, 40487108 - 40487172
Alignment:
Q  107 gtaaactcgaatcgtaagctcgtacgagtttacctaaaattgaaattttatacaatttattatat 171  Q
    ||||||||||||||||| |||||||||||||| ||| |||| |||||||||| ||||||||||||    
T  40487108 gtaaactcgaatcgtaaactcgtacgagtttatctataattaaaattttataaaatttattatat 40487172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 205
Target Start/End: Complemental strand, 12755093 - 12754952
Alignment:
Q  53 gttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattgaaat 152  Q
    ||||| ||||||||||||||||| ||||||||||| | ||||||||||||||||| | ||            ||||||||||||||||||||||| ||||    
T  12755093 gttttacaactcgagagtttacctcaactcgttttgcttaggtaaactcgactcg-agac------------ctcgtacgagtttacctaaaattaaaat 12755007  T
Q  153 tttatacaatttattatatgcatgaca--tatgtaagctaatataatactgtaaa 205  Q
    | |||| |||||||| |||||||| ||  ||| |||| |||||||||| ||||||    
T  12755006 tatataaaatttattgtatgcatgccatgtatataaggtaatataatattgtaaa 12754952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 49 - 205
Target Start/End: Original strand, 46862257 - 46862400
Alignment:
Q  49 caaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattg 148  Q
    ||||||||||||||||||||||||||| |||||||||||  ||||||||| |||| |||  |||||  |             |||||||||||||||||     
T  46862257 caaggttttgcaactcgagagtttacctcaactcgttttgtctaggtaaattcgattcgagaactctga-------------cgagtttacctaaaatta 46862343  T
Q  149 aaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaa 205  Q
    |||||  | | |||||| |||||||| ||||||| ||||||||||||||| ||||||    
T  46862344 aaattacagaaaatttactatatgcaagacatatataagctaatataatattgtaaa 46862400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 107 - 194
Target Start/End: Complemental strand, 9973466 - 9973378
Alignment:
Q  107 gtaaactcgaatcgtaagctcgtacgagtttacctaaaattgaaattttatacaatttattatatgcat--gacatatgtaagctaatat 194  Q
    |||||||||| || ||| ||||||||||||||||||||||| ||||| |||| ||||||||||||  ||   ||||||||||||||||||    
T  9973466 gtaaactcgactcataaactcgtacgagtttacctaaaatt-aaattatataaaatttattatatatataaaacatatgtaagctaatat 9973378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 49 - 115
Target Start/End: Complemental strand, 26449287 - 26449221
Alignment:
Q  49 caaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcg 115  Q
    ||||||||| |||||||| |||||||| |||||||||||| ||| ||||||| || |||||||||||    
T  26449287 caaggttttacaactcgatagtttacctcaactcgttttagctatgtaaacttgaatcgtaaactcg 26449221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 8562509 - 8562570
Alignment:
Q  54 ttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcg 115  Q
    |||| ||| ||||||||||||| |||||||||||| ||| |||||||||| |||||||||||    
T  8562509 ttttccaattcgagagtttacctcaactcgttttagctatgtaaactcgaatcgtaaactcg 8562570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 109
Target Start/End: Original strand, 2326376 - 2326432
Alignment:
Q  53 gttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgta 109  Q
    ||||||||||||| ||||||| | ||||||||||| ||||| |||||||||||||||    
T  2326376 gttttgcaactcgcgagtttatctcaactcgttttgcctagataaactcgactcgta 2326432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 107 - 167
Target Start/End: Original strand, 23170160 - 23170220
Alignment:
Q  107 gtaaactcgaatcgtaagctcgtacgagtttacctaaaattgaaattttatacaatttatt 167  Q
    |||||||||||||| || ||||||| ||||||||||||||| ||||| |||| ||||||||    
T  23170160 gtaaactcgaatcggaaactcgtacaagtttacctaaaattaaaattatataaaatttatt 23170220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 107 - 167
Target Start/End: Complemental strand, 26449242 - 26449183
Alignment:
Q  107 gtaaactcgaatcgtaagctcgtacgagtttacctaaaattgaaattttatacaatttatt 167  Q
    ||||||| ||||||||| ||||||||||||||||||||||| ||||| |||| ||||||||    
T  26449242 gtaaacttgaatcgtaaactcgtacgagtttacctaaaatt-aaattatataaaatttatt 26449183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 107 - 147
Target Start/End: Original strand, 56423461 - 56423501
Alignment:
Q  107 gtaaactcgaatcgtaagctcgtacgagtttacctaaaatt 147  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  56423461 gtaaactcgaatcgtaaactcgtacgagtttacctaaaatt 56423501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 49 - 115
Target Start/End: Complemental strand, 22480416 - 22480350
Alignment:
Q  49 caaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcg 115  Q
    ||||||||| ||||||||||||||||  ||||||   ||||||| ||||| ||||||||||||||||    
T  22480416 caaggttttacaactcgagagtttacttcaactctaattacctaagtaaattcgactcgtaaactcg 22480350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 17503227 - 17503284
Alignment:
Q  50 aaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcg 107  Q
    |||||||| ||||| ||||||||||| |||||| |||| | |||||||||||||||||    
T  17503227 aaggttttacaacttgagagtttacctcaactcattttgcttaggtaaactcgactcg 17503284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 196
Target Start/End: Complemental strand, 22480371 - 22480283
Alignment:
Q  107 gtaaactcgaatcgtaagctcgtacgagtttacctaaaattgaaattttatacaatttattatatgcatgacatatgtaagctaatataa 196  Q
    ||||| |||| |||||| ||||||  |||||| |||||||| ||||| |||| || ||| ||||| |||||||||||||||| |||||||    
T  22480371 gtaaattcgactcgtaaactcgtatcagtttatctaaaattaaaattatata-aacttactatatacatgacatatgtaagccaatataa 22480283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 186
Target Start/End: Complemental strand, 24454290 - 24454229
Alignment:
Q  125 ctcgtacgagtttacctaaaattgaaattttatacaatttattatatgcatgacatatgtaa 186  Q
    |||||||||||||| |||||||| |||||  ||| |||||||||| | ||||||||||||||    
T  24454290 ctcgtacgagtttatctaaaattaaaattaaataaaatttattatttacatgacatatgtaa 24454229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 51967818 - 51967765
Alignment:
Q  49 caaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcg 102  Q
    |||||||||  |||||||||||||||| |||||||||||| ||| |||||||||    
T  51967818 caaggttttataactcgagagtttacctcaactcgttttagctacgtaaactcg 51967765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 189
Target Start/End: Complemental strand, 26973047 - 26972983
Alignment:
Q  125 ctcgtacgagtttacctaaaattgaaattttatacaatttattatatgcatgacatatgtaagct 189  Q
    ||||||||||||||||| ||||| ||||| |||| ||||||| || ||||||| |||| ||||||    
T  26973047 ctcgtacgagtttaccttaaattaaaattatataaaatttatcatttgcatgatatatataagct 26972983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 147
Target Start/End: Complemental strand, 40163360 - 40163320
Alignment:
Q  107 gtaaactcgaatcgtaagctcgtacgagtttacctaaaatt 147  Q
    ||||||||||||||||| |||||| ||||||||||||||||    
T  40163360 gtaaactcgaatcgtaaactcgtaggagtttacctaaaatt 40163320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 115
Target Start/End: Complemental strand, 9973512 - 9973445
Alignment:
Q  48 tcaaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcg 115  Q
    |||| ||||| |||||| ||| |||||| |||||| ||||| ||| ||||||||||||| ||||||||    
T  9973512 tcaatgttttacaactcaagattttacctcaactcattttagctatgtaaactcgactcataaactcg 9973445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 198
Target Start/End: Original strand, 21305775 - 21305866
Alignment:
Q  107 gtaaactcgaatcgtaagctcgtacgagtttacctaaaattgaaattttatacaatttattatatgcatgacatatgtaagctaatataata 198  Q
    |||||||||| || ||| |||||| ||||||||| ||||||   ||| |||| |||||||||||| ||| |||| |||| |||||| |||||    
T  21305775 gtaaactcgactcataaactcgtatgagtttacccaaaattatcattatataaaatttattatatacataacatttgtatgctaatgtaata 21305866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 92
Target Start/End: Complemental strand, 25014120 - 25014077
Alignment:
Q  49 caaggttttgcaactcgagagtttaccgcaactcgttttaccta 92  Q
    ||||||||| ||||||||||||||||| |||||||||||| |||    
T  25014120 caaggttttacaactcgagagtttacctcaactcgttttagcta 25014077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 115
Target Start/End: Original strand, 23170119 - 23170181
Alignment:
Q  53 gttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcg 115  Q
    ||||| |||||| |||||||| | ||||||||||||| || |||||||||| ||| |||||||    
T  23170119 gttttacaactcaagagtttatctcaactcgttttacataagtaaactcgaatcggaaactcg 23170181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 165 - 198
Target Start/End: Original strand, 40317095 - 40317128
Alignment:
Q  165 attatatgcatgacatatgtaagctaatataata 198  Q
    ||||||| ||||||||||||||||||||||||||    
T  40317095 attatatacatgacatatgtaagctaatataata 40317128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 165 - 198
Target Start/End: Original strand, 40327169 - 40327202
Alignment:
Q  165 attatatgcatgacatatgtaagctaatataata 198  Q
    ||||||| ||||||||||||||||||||||||||    
T  40327169 attatatacatgacatatgtaagctaatataata 40327202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 193
Target Start/End: Original strand, 41469706 - 41469767
Alignment:
Q  132 gagtttacctaaaattgaaattttatacaatttattatatgcatgacatatgtaagctaata 193  Q
    |||||||||||||||| ||||| |||| ||||||||||||  ||  ||||| ||||||||||    
T  41469706 gagtttacctaaaattaaaattatataaaatttattatatatatagcatatttaagctaata 41469767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 108 - 205
Target Start/End: Complemental strand, 136265 - 136168
Alignment:
Q  108 taaactcgaatcgtaagctcgtacgagtttacctaaaattgaaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaa 205  Q
    ||||||||| |||  | |||| |||||||||||||||||| ||||| |||| |||||||||||| |||||||||| ||||||||||||||||| ||||    
T  136265 taaactcgactcgagaactcgcacgagtttacctaaaattaaaattatataaaatttattatatacatgacatatataagctaatataatactataaa 136168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0573 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0573
Description:

Target: scaffold0573; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 123 - 205
Target Start/End: Complemental strand, 9588 - 9507
Alignment:
Q  123 agctcgtacgagtttacctaaaattgaaattttatacaatttattatatgcatgacatatgtaagctaatataatactgtaaa 205  Q
    |||||||||||||||||||||| || ||||| |||| ||||| ||||||||| ||||||| ||||||||||||||| ||||||    
T  9588 agctcgtacgagtttacctaaa-ttaaaattatataaaatttcttatatgcaagacatatataagctaatataatattgtaaa 9507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 47; Significance: 5e-18; HSPs: 3)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 49 - 115
Target Start/End: Original strand, 25002 - 25068
Alignment:
Q  49 caaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcg 115  Q
    ||||||||| ||||||||||||||||| |||||||||||| ||| |||||||||| |||||||||||    
T  25002 caaggttttacaactcgagagtttacctcaactcgttttagctatgtaaactcgaatcgtaaactcg 25068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 107 - 171
Target Start/End: Original strand, 25047 - 25111
Alignment:
Q  107 gtaaactcgaatcgtaagctcgtacgagtttacctaaaattgaaattttatacaatttattatat 171  Q
    ||||||||||||||||| |||||||||||||| ||| |||| |||||||||| ||||||||||||    
T  25047 gtaaactcgaatcgtaaactcgtacgagtttatctataattaaaattttataaaatttattatat 25111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 49 - 103
Target Start/End: Complemental strand, 2025 - 1971
Alignment:
Q  49 caaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcga 103  Q
    ||||||||| ||||||| ||||||||| |||||||||||| ||| ||||||||||    
T  2025 caaggttttacaactcgggagtttacctcaactcgttttagctatgtaaactcga 1971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 155 - 205
Target Start/End: Complemental strand, 89980 - 89930
Alignment:
Q  155 tatacaatttattatatgcatgacatatgtaagctaatataatactgtaaa 205  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  89980 tataaaatttattatatgcatgacatatgtaagctaatataatactgtaaa 89930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 60 - 183
Target Start/End: Complemental strand, 38584 - 38461
Alignment:
Q  60 aactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaagctcgtacgagtttacctaaaattgaaattttatac 159  Q
    |||| ||||||||||| ||||| ||||||| || ||||||| || |||| ||||||| | |||| | |||| |||||||||||| ||| ||||| ||||     
T  38584 aacttgagagtttacctcaacttgttttacttatgtaaacttgaatcgtgaactcgatttgtaaacccgtatgagtttacctaacattaaaattatataa 38485  T
Q  160 aatttattatatgcatgacatatg 183  Q
    | || | ||||| |||||||||||    
T  38484 atttgagtatatacatgacatatg 38461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 50 - 110
Target Start/End: Original strand, 36903 - 36963
Alignment:
Q  50 aaggttttgcaactcgagagtttaccgcaactcgttttacctaggtaaactcgactcgtaa 110  Q
    ||||||||||||||||| |||||||| |||||| |||| ||||||| |||| |||||||||    
T  36903 aaggttttgcaactcgaaagtttacctcaactcattttgcctaggtcaacttgactcgtaa 36963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 198
Target Start/End: Original strand, 4964 - 5039
Alignment:
Q  125 ctcgtacgagtttacctaaaattgaaattttatacaatttattatatgcatgacata--tgtaagctaatataata 198  Q
    ||||||||||||||||||||||| |||||  ||| |||||||||| |  ||||||||  ||||| |||||||||||    
T  4964 ctcgtacgagtttacctaaaattaaaattaaataaaatttattatttatatgacatatgtgtaaactaatataata 5039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University