View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21388_high_2 (Length: 765)
Name: NF21388_high_2
Description: NF21388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21388_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 499; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 156 - 742
Target Start/End: Complemental strand, 476119 - 475518
Alignment:
| Q |
156 |
gagtgtagcctattgtatagagaaattgatacaatttttcattctttaaatttaacacagttttttcaatcaacagtgtaatatatattcatcagctaaa |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
476119 |
gagtgtagcctattgtatagagaaattgatacaatttttcattctttaaatttaacacagttttttcaatcaacagtgtaatatatattcatcagctaaa |
476020 |
T |
|
| Q |
256 |
aattttataatttacctttcttgaagattcattttaaaaatttcatttgtctcataattaaccatt--ttatgctcttaattttgtatttctctcacaat |
353 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
476019 |
aaatttataatttacctttcttgaagattcattttaaaaatttcatttgtctcataattaaccattgattatgctcttaagtttgtatttctctcacaat |
475920 |
T |
|
| Q |
354 |
aaatgaatacataaatgacaaagagtaaaaaagtaacttcaactgttattctcttcagctatatcatggaaagcnnnnnnnnnnnngatacagtgatgat |
453 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
475919 |
aaatgaatacataaatgacaaagagtaaaaaagtaacttcaactgttattctcttcagctatatcatggaaagcaaacataaaaaagatacagtgatgat |
475820 |
T |
|
| Q |
454 |
gacattaattttaatta-------------tggaatgacattcattgattcctttttcaatcaacgttgtaatgtagattcatctgctaaaagagtttct |
540 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
475819 |
gacattaattttaattaagctaaaaaattatggaatgacattcattgattcctttttcaatcaacgttgtaatgtagattcatctgctaaaagagtttct |
475720 |
T |
|
| Q |
541 |
ttcaaatcggttatcaaaattttcacttcctctgtctgagtaaccatagattttggatctatcttctgtttgacatggactacatcttccgctttacccc |
640 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
475719 |
ttcaaatcggttatcaaaattttcacttcctctgtctgagtaaccatagattttggatctatcttctgtttgacatggactacatcttccgctttacccc |
475620 |
T |
|
| Q |
641 |
aaagcacgacatacaagccaatgatcactccaattgcgcctatcatgctaactcacatgaagcataagcatcagttaattagattaataatttaagttgt |
740 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
475619 |
aaagcacgacatacaagccaatgatcactccaattgcgcctatcaagctaactcacatgaagcataagcatcagttaattagattaataatttaagttgt |
475520 |
T |
|
| Q |
741 |
aa |
742 |
Q |
| |
|
|| |
|
|
| T |
475519 |
aa |
475518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 20 - 162
Target Start/End: Complemental strand, 476286 - 476144
Alignment:
| Q |
20 |
ccttgatctcaaaatcatcttgaaattttcctttggttgcttcaaattccccactaaattgtttcctgtgagaactcactctatcatcaacatagactaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
476286 |
ccttgatctcaaaatcatcttgaaattttcctttggttgcttcaaattccccactaaattgtttcctgtgagaactcactctatcatcaacatagactaa |
476187 |
T |
|
| Q |
120 |
gagtggtgtaaaagatgaagctagtttattagtgaagagtgta |
162 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
476186 |
gagtggtgtaaaagatgaagctagtttattagtgaagagtgta |
476144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 558 - 683
Target Start/End: Complemental strand, 449745 - 449620
Alignment:
| Q |
558 |
aattttcacttcctctgtctgagtaaccatagattttggatctatcttctgtttgacatggactacatcttccgctttaccccaaagcacgacatacaag |
657 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||| ||||||||| ||| |||| ||||| ||||| |||||||||||||| || | ||||||| |
|
|
| T |
449745 |
aattttcacttcctctgtctcattaaccatagattttggaactatcttctctttaacatcaactacttcttcagctttaccccaaagtacaatatacaag |
449646 |
T |
|
| Q |
658 |
ccaatgatcactccaattgcgcctat |
683 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
449645 |
ccaatgatcactccaattgcgcctat |
449620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 584 - 731
Target Start/End: Complemental strand, 469129 - 468982
Alignment:
| Q |
584 |
ccatagattttggatctatcttctgtttgacatggactacatcttccgctttaccccaaagcacgacatacaagccaatgatcactccaattgcgcctat |
683 |
Q |
| |
|
|||||||||||||| |||| |||| ||| | || ||||| ||||| |||||||||||||| || | |||||| |||||||||||||||||||| ||||| |
|
|
| T |
469129 |
ccatagattttggaactatattctctttaatatcaactacttcttcagctttaccccaaagtacaatatacaaaccaatgatcactccaattgcacctat |
469030 |
T |
|
| Q |
684 |
catgctaactcacatgaagcataagcatcagttaattagattaataat |
731 |
Q |
| |
|
|| |||||| ||||||||| | ||| |||| ||| ||||||||||||| |
|
|
| T |
469029 |
caagctaacacacatgaagtagaagaatcatttagttagattaataat |
468982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 622 - 747
Target Start/End: Complemental strand, 457977 - 457851
Alignment:
| Q |
622 |
acatcttccgctttaccccaaagcacgacatacaagccaatgatcactccaattgcgcctatcatgct-aactcacatgaagcataagcatcagttaatt |
720 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||| || |||||||| ||||| ||||| ||| || |
|
|
| T |
457977 |
acatcttcagctttaccccaaagcacagtatacaagccaatgatcactccaattgcgcctattaagctaaaaacacatgaatcataaacatcatttagtt |
457878 |
T |
|
| Q |
721 |
agattaataatttaagttgtaatgttc |
747 |
Q |
| |
|
||| |||||||| |||||||||||||| |
|
|
| T |
457877 |
agactaataattcaagttgtaatgttc |
457851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 592 - 692
Target Start/End: Complemental strand, 481303 - 481203
Alignment:
| Q |
592 |
tttggatctatcttctgtttgacatggactacatcttccgctttaccccaaagcacgacatacaagccaatgatcactccaattgcgcctatcatgctaa |
691 |
Q |
| |
|
||||||||| |||||| |||||| | |||||||||| |||||||||||||| || |||||| || ||||||||||||||||| || |||| ||||| |
|
|
| T |
481303 |
tttggatctgtcttctctttgacttcagctacatcttcagctttaccccaaagtacagtatacaaacctatgatcactccaattgcaccaatcaagctaa |
481204 |
T |
|
| Q |
692 |
c |
692 |
Q |
| |
|
| |
|
|
| T |
481203 |
c |
481203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 581 - 729
Target Start/End: Original strand, 27489261 - 27489411
Alignment:
| Q |
581 |
taaccatagattttggatctatcttctgtttgacatggactacatcttccgctttaccccaaagcacgacatacaagccaatgatcactccaattgcgcc |
680 |
Q |
| |
|
|||| ||||||||| ||| | ||||| ||| |||| ||||||||||| ||||| |||||||| || | ||||||||||||||||||||||||||| || |
|
|
| T |
27489261 |
taacgatagatttttgatttcccttctctttcacatcaactacatcttcagcttttccccaaagaacaatatacaagccaatgatcactccaattgcacc |
27489360 |
T |
|
| Q |
681 |
tatcatgc--taactcacatgaagcataagcatcagttaattagattaata |
729 |
Q |
| |
|
||||| || |||| |||||||||| ||| |||| ||| ||||||||||| |
|
|
| T |
27489361 |
tatcaagctataacaaacatgaagcagaagaatcatttagttagattaata |
27489411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University