View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21388_high_3 (Length: 631)
Name: NF21388_high_3
Description: NF21388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21388_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 504; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 3 - 613
Target Start/End: Complemental strand, 4236867 - 4236248
Alignment:
| Q |
3 |
aggaggagcagagatggtactaagaatgtgctcaaaataccatgatcgttttggaatttcgaaagatcttgacaatgaaaccatgttgaaattcgaaagg |
102 |
Q |
| |
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||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4236867 |
aggagcagcagagatggtactaagaatgtgttcaaaataccatgatggttttggaatttcgaaagatcttgacaatgaaaccatgttgaaattcgaaagg |
4236768 |
T |
|
| Q |
103 |
attattcaaggtatggcggctagtagtcttcgttgcatcgctttagcgtatacaaaagttacagacgaagagcttgaagttgaaggagatatgaacaaga |
202 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4236767 |
attattcaaggtatggcggctagtagtcttcgttgcatcgctttagcgtatacaaaagttacagacgaagagcttgaagttgaaggagatatgaacaaga |
4236668 |
T |
|
| Q |
203 |
tggtggtaaaagacaatggtttaacattgttaggacttgtaggcattaaggatccatgtcgcccgggggtgaagacggcagtggaagcttgccaacatgc |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
4236667 |
tggtggtaaaagacaatggtttaacattgttaggacttgtaggcattaaggatccatgtcgcccgggggtgaagacgacagtggaagcttgccaacatgc |
4236568 |
T |
|
| Q |
303 |
tggtgtgaatgtcaaaatgattacaggtattactaaaatatcttatttatcgataacttgataatataaaattctctatttatacatacgagtctatatg |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4236567 |
tggtgtgaatgtcaaaatgattacaggtattactaaaatatcttatttatcgataacttgataatataaaattctctatttatacatacgagcctatatg |
4236468 |
T |
|
| Q |
403 |
aatacgaagaagataataagaa---------taactaattcttaattgactattaactaactttatctctgatgacaggtgataatgttttcactgcaaa |
493 |
Q |
| |
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| | || ||| |||||||||| |||||| || |||||| || |||||| ||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
4236467 |
gaaatgatgaatataataagaatagttaacctaactagttgttaattaaccattaacatactttatctctgatgacaggtgacaatgttttcactgcaaa |
4236368 |
T |
|
| Q |
494 |
agctatagcatttgaatgcggaattcttcaaccaaatcaggacacagatgaaacagtggttgaaggtgaacaatttcgtaacttcacacacgaagagagg |
593 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
4236367 |
agctatagcatttgaatgtggaattcttcaacctaatcaggacacggatgaaacagtggttgaaggcgaacaatttcgtaacttcacacacgaagagagg |
4236268 |
T |
|
| Q |
594 |
ttggcgaaagttgagaaaat |
613 |
Q |
| |
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|||||||||||||||||||| |
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| T |
4236267 |
ttggcgaaagttgagaaaat |
4236248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 364
Target Start/End: Original strand, 37067887 - 37067926
Alignment:
| Q |
325 |
acaggtattactaaaatatcttatttatcgataacttgat |
364 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||| |
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|
| T |
37067887 |
acaggtattactaaaatatctcatttattgataacttgat |
37067926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 325 - 363
Target Start/End: Original strand, 37060411 - 37060449
Alignment:
| Q |
325 |
acaggtattactaaaatatcttatttatcgataacttga |
363 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||||| |
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|
| T |
37060411 |
acaggtattactaaaatatctcatttattgataacttga |
37060449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 3 - 352
Target Start/End: Complemental strand, 6185960 - 6185611
Alignment:
| Q |
3 |
aggaggagcagagatggtactaagaatgtgctcaaaataccatgatcgttttggaatttcgaaagatcttgacaatgaaaccatgttgaaattcgaaagg |
102 |
Q |
| |
|
||||| ||| |||||||||||||||||||| |||| |||| ||||| ||| |||||||| ||||||||||||||||||| | ||| ||||||||||||| |
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|
| T |
6185960 |
aggagcagccgagatggtactaagaatgtgttcaagatactatgatggttatggaattttgaaagatcttgacaatgaatctatgctgaaattcgaaagc |
6185861 |
T |
|
| Q |
103 |
attattcaaggtatggcggctagtagtcttcgttgcatcgctttagcgtatacaaaagttacagacgaagagcttgaagttgaaggagatatgaacaaga |
202 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||| |||||||| |||| | | ||||||||| | | ||||| |
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|
| T |
6185860 |
attattcaaggtatggcagctagtagtcttcgttgcatcgctttagcgtgtacagaagtctcagacgaaaagctaggacatgaaggagacaacaccaaga |
6185761 |
T |
|
| Q |
203 |
tggtggtaaaagacaatggtttaacattgttaggacttgtaggcattaaggatccatgtcgcccgggggtgaagacggcagtggaagcttgccaacatgc |
302 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||| |
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|
| T |
6185760 |
tggtggtaaaagagaatgatttaacattgttaggacttgtcggcattaaggatccatgtcgcccaggggtgaagacagcggtggaagcttgccaacatgc |
6185661 |
T |
|
| Q |
303 |
tggtgtgaatgtcaaaatgattacaggtattactaaaatatcttatttat |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| |||||| |
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|
| T |
6185660 |
cggtgtgaatgtcaaaatgattacaggtattactataatatctcatttat |
6185611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 470 - 592
Target Start/End: Complemental strand, 6185515 - 6185393
Alignment:
| Q |
470 |
aggtgataatgttttcactgcaaaagctatagcatttgaatgcggaattcttcaaccaaatcaggacacagatgaaacagtggttgaaggtgaacaattt |
569 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||| ||||||||| ||||||||||| ||||||||| |
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| T |
6185515 |
aggtgacaatgttttcactgcgaaagctatagcatttgaatgtggaattcttcaacctaatcaggacatagatgaaacggtggttgaaggcgaacaattt |
6185416 |
T |
|
| Q |
570 |
cgtaacttcacacacgaagagag |
592 |
Q |
| |
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|| ||||| || ||||||||||| |
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| T |
6185415 |
cgcaactttacgcacgaagagag |
6185393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 99
Target Start/End: Complemental strand, 21847718 - 21847622
Alignment:
| Q |
3 |
aggaggagcagagatggtactaagaatgtgctcaaaataccatgatcgttttggaatttcgaaagatcttgacaatgaaaccatgttgaaattcgaa |
99 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||| ||| | | | | |||||||| ||||||||||||||||| | | ||||||||||||||| |
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|
| T |
21847718 |
aggagaagcagagatggtactaagaatgtgttcaagatattacattggctgtggaattttgaaagatcttgacaatggatctatgttgaaattcgaa |
21847622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 325 - 364
Target Start/End: Complemental strand, 402337 - 402298
Alignment:
| Q |
325 |
acaggtattactaaaatatcttatttatcgataacttgat |
364 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
402337 |
acaggtattactaaaatatctcatttatcgataacttgat |
402298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 376 - 438
Target Start/End: Original strand, 45369930 - 45369992
Alignment:
| Q |
376 |
ctctatttatacatacgagtctatatgaatacgaagaagataataagaataactaattcttaa |
438 |
Q |
| |
|
||||||||||||||| ||||| ||||||| | ||| | ||||| ||| ||||||||||||||| |
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|
| T |
45369930 |
ctctatttatacatatgagtccatatgaaaatgaaaaggataacaaggataactaattcttaa |
45369992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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