View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21388_high_7 (Length: 361)
Name: NF21388_high_7
Description: NF21388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21388_high_7 |
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| [»] chr5 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 10 - 361
Target Start/End: Complemental strand, 6580296 - 6579945
Alignment:
| Q |
10 |
acatcatcagccttcttgataaagtgttcggaaagtcctgggctagaaactacacttcaacaacattatgcagatcaatatagttattacctttaaattt |
109 |
Q |
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| T |
6580296 |
acatcatcagtcttcttgacaaagtgttcggaaagtcctgggctagaaactacacttcaacaacattatgcagatcaatatagttattacctttaaattt |
6580197 |
T |
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| Q |
110 |
ctctgtggtgatggtgggatgaaggaaataataaagaaactttagaaagagtcaaatcaaatataccagacaatcgaattgcttcactttcttacagttc |
209 |
Q |
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| T |
6580196 |
ctctgtggtgatggtgggatgaaggaaataataaaggaactttagaaagagtcaaatcaaatataccaaacaatcgaattgcttcactttcttacagttc |
6580097 |
T |
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| Q |
210 |
gtttcattgcacttggttttctcattcgtattacattcttatgcagcaattgaatcaattgatatcccacgtatcctttctcaacaaggtggagaagcag |
309 |
Q |
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| T |
6580096 |
gtttcattgcacttggttttctcattcgtattacattcttatgcagcaattgaatcaattgatatcccacgtatcctttctcaacaaggtggagaagcag |
6579997 |
T |
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| Q |
310 |
tgtatcccttaccgcgaattaaagctatagaatttcatccaaaatctaattt |
361 |
Q |
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| T |
6579996 |
tgtatcccttaccgcgaattaaagctatagaatttcatccaaaatctaattt |
6579945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 241 - 361
Target Start/End: Original strand, 34239579 - 34239699
Alignment:
| Q |
241 |
tacattcttatgcagcaattgaatcaattgatatcccacgtatcctttctcaacaaggtggagaagcagtgtatcccttaccgcgaattaaagctataga |
340 |
Q |
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| T |
34239579 |
tacattctgatgcagcaatcgaatcaattgatatccctcgcatcctttctcaacagggtggagaagcagtttatccattgccacgaattaaagcaataga |
34239678 |
T |
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| Q |
341 |
atttcatccaaaatctaattt |
361 |
Q |
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| T |
34239679 |
atttcatccaaaatcgaattt |
34239699 |
T |
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