View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21388_high_8 (Length: 358)
Name: NF21388_high_8
Description: NF21388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21388_high_8 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 18 - 358
Target Start/End: Original strand, 48091075 - 48091428
Alignment:
| Q |
18 |
catcttactatatatgcaatgtatatatgcatgacagtccacaccttaaattttattttccaatgtatg----aataaaatgcaactactacct------ |
107 |
Q |
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| T |
48091075 |
catcttactatatatgcaatgtat----gcatgacagtccacaccttaaattttattttccaatgtatgtatgaataaaatgcaactactacctgtgtac |
48091170 |
T |
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| Q |
108 |
-----tttgttgtgtgggccattcttccatcaatattattttccaaaatcatcatatacatattaatatctctgacacactata--tatatagcaccttt |
200 |
Q |
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| T |
48091171 |
taccttttgttgtgtgggccattcttccatcaatattattttccaaaatcatcatatacatattaatatctctgacacactatatatatatagcaccttt |
48091270 |
T |
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| Q |
201 |
cctcattcctctacttacagtcttcatatacattgctaattttaagttgaattaaatccatggctgccactatggttttgcagtcttattacatcaatgt |
300 |
Q |
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| T |
48091271 |
cctcattcctctacttacagtcttcatatacattgctaattttaagttgaattaaatccatggctgccactatggttttgcagtcttattacatcaatgt |
48091370 |
T |
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| Q |
301 |
agtgatcatattgatggtggcattgacgagttgtttcaaaggcacagtggcacaacgt |
358 |
Q |
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| T |
48091371 |
agtgatcatattgatggtggcattgacgagttgtttcaaaggcacagtggcacaacgt |
48091428 |
T |
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