View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21388_high_9 (Length: 349)

Name: NF21388_high_9
Description: NF21388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21388_high_9
NF21388_high_9
[»] chr7 (7 HSPs)
chr7 (6-349)||(27831558-27831901)
chr7 (18-327)||(27848849-27849158)
chr7 (112-292)||(6788711-6788891)
chr7 (24-82)||(8646286-8646344)
chr7 (24-77)||(3146678-3146731)
chr7 (183-292)||(8615914-8616023)
chr7 (177-265)||(8674464-8674552)
[»] chr1 (1 HSPs)
chr1 (177-292)||(15594237-15594352)
[»] chr4 (1 HSPs)
chr4 (204-292)||(30774451-30774539)
[»] chr2 (3 HSPs)
chr2 (121-223)||(12246207-12246309)
chr2 (121-166)||(7541548-7541593)
chr2 (121-265)||(16658318-16658462)
[»] chr8 (1 HSPs)
chr8 (24-77)||(43744230-43744283)


Alignment Details
Target: chr7 (Bit Score: 332; Significance: 0; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 6 - 349
Target Start/End: Original strand, 27831558 - 27831901
Alignment:
Q  6 acctttgtctttatcagggtttatgagggggagagaactagagccagcgacaacaatctacttggttcttttaatctcactgggttgacccctgcgcctc 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27831558 acctttgtctttatcagggtttatgagggggagagaactagagccagcgacaacaatctacttggttcttttaatctcactgggttgacccctgcgcctc 27831657  T
Q  106 gtcgccatcctttttatgtatgttttgctatcgatgaaaatggcattttgacagtctctgccacagaagtttccaccggcaatacaaataagataataat 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27831658 gtcgccatcctttttatgtatgttttgctatcgatgaaaatggcattttgacagtctctgccacagaagtttccaccggcaatacaaataagataataat 27831757  T
Q  206 aaccaattacaaagaaagactatcaacagaagaaattaagaaaatgattgaagaagctgataattaccgtgctgaagatgagaaattactacgaatggct 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  27831758 aaccaattacaaagaaagactatcaacagaagaaattaagaaaatgattgaagaagctgataattaccgtgctgaagatgagaaattcctacgaatggct 27831857  T
Q  306 caactgaaaaatgcattagatatctgtgtttacacaattgaaac 349  Q
    ||||||||||||||||||||| |||||||||||| |||||||||    
T  27831858 caactgaaaaatgcattagatctctgtgtttacaaaattgaaac 27831901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 18 - 327
Target Start/End: Original strand, 27848849 - 27849158
Alignment:
Q  18 atcagggtttatgagggggagagaactagagccagcgacaacaatctacttggttcttttaatctcactgggttgacccctgcgcctcgtcgccatcctt 117  Q
    ||||| ||||||||||||||||||||||  ||||| ||||||||||  ||||| ||||||| |||| |||| ||  | ||||| | |||  |||||||||    
T  27848849 atcagtgtttatgagggggagagaactaaggccagtgacaacaatcggcttggctcttttactctctctggattccctcctgcccttcgcggccatcctt 27848948  T
Q  118 tttatgtatgttttgctatcgatgaaaatggcattttgacagtctctgccacagaagtttccaccggcaatacaaataagataataataaccaattacaa 217  Q
    || ||||||||||| | || |||| ||| || |  ||||||||  ||||||  ||||| ||||| |||| ||||||| |||| ||||| || ||||||||    
T  27848949 ttgatgtatgttttacaattgatggaaacggtacattgacagttgctgccaaggaagtatccactggcagtacaaatgagattataattactaattacaa 27849048  T
Q  218 agaaagactatcaacagaagaaattaagaaaatgattgaagaagctgataattaccgtgctgaagatgagaaattactacgaatggctcaactgaaaaat 317  Q
    |||||| |||||||||||||||||||| ||  ||||| |||||||||| ||  |||||| ||||||||||||||| |||| |||||||||||||||||||    
T  27849049 agaaaggctatcaacagaagaaattaaaaagttgattcaagaagctgagaaccaccgtgatgaagatgagaaattcctacaaatggctcaactgaaaaat 27849148  T
Q  318 gcattagata 327  Q
    ||||| ||||    
T  27849149 gcattggata 27849158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 112 - 292
Target Start/End: Complemental strand, 6788891 - 6788711
Alignment:
Q  112 atcctttttatgtatgttttgctatcgatgaaaatggcattttgacagtctctgccacagaagtttccaccggcaatacaaataagataataataaccaa 211  Q
    |||||||| |||||| |||| |||| ||||||||||| |||||||| || ||||| || |||   ||||| |||||||  ||| |||| |  ||||||||    
T  6788891 atccttttgatgtatatttttctattgatgaaaatggtattttgaccgtttctgctactgaaaaatccacgggcaatatgaatgagattaccataaccaa 6788792  T
Q  212 ttacaaagaaagactatcaacagaagaaattaagaaaatgattgaagaagctgataattaccgtgctgaagatgagaaatt 292  Q
    ||||||||||||  | |  |  || |||||||| ||| ||||| |||||||||| |||||||  | ||||||| |||||||    
T  6788791 ttacaaagaaaggttgtgtagtgacgaaattaaaaaattgattaaagaagctgagaattacctcgttgaagataagaaatt 6788711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 8646344 - 8646286
Alignment:
Q  24 gtttatgagggggagagaactagagccagcgacaacaatctacttggttcttttaatct 82  Q
    ||||||||||| |||||| | ||||| || ||||||||||| |||||||||||||||||    
T  8646344 gtttatgagggtgagagagcaagagcaagtgacaacaatctgcttggttcttttaatct 8646286  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 3146731 - 3146678
Alignment:
Q  24 gtttatgagggggagagaactagagccagcgacaacaatctacttggttctttt 77  Q
    ||||||||||| |||||| | ||||| || ||||||||||| ||||||||||||    
T  3146731 gtttatgagggtgagagagcaagagctagtgacaacaatctgcttggttctttt 3146678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 292
Target Start/End: Complemental strand, 8616023 - 8615914
Alignment:
Q  183 ggcaatacaaataagataataataaccaattacaaagaaagactatcaacagaagaaattaagaaaatgattgaagaagctgataattaccgtgctgaag 282  Q
    |||||||||||| | ||||  ||||||||| ||||||||||  ||||  | || |||||||| ||| ||||| ||||||| ||  | ||||| |||||||    
T  8616023 ggcaatacaaatgaaataacgataaccaatgacaaagaaaggttatcggctgatgaaattaaaaaactgattcaagaagcagaggagtaccgcgctgaag 8615924  T
Q  283 atgagaaatt 292  Q
    |||| |||||    
T  8615923 atgaaaaatt 8615914  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 265
Target Start/End: Original strand, 8674464 - 8674552
Alignment:
Q  177 tccaccggcaatacaaataagataataataaccaattacaaagaaagactatcaacagaagaaattaagaaaatgattgaagaagctga 265  Q
    |||||||| ||||| ||  |||||| |||||| ||  ||||||||||  | |||| |||||||||||| ||| ||||| ||||||||||    
T  8674464 tccaccggaaataccaacgagataacaataacaaacaacaaagaaaggttgtcaatagaagaaattaacaaattgattcaagaagctga 8674552  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 177 - 292
Target Start/End: Complemental strand, 15594352 - 15594237
Alignment:
Q  177 tccaccggcaatacaaataagataataataaccaattacaaagaaagactatcaacagaagaaattaagaaaatgattgaagaagctgataattaccgtg 276  Q
    ||||| |||||||||||  |||| | |||||||||| ||||||||||  | ||| || | |||||||| ||||||||| ||||||| ||  | || ||||    
T  15594352 tccactggcaatacaaacgagatcacaataaccaatgacaaagaaaggttgtcagcatatgaaattaaaaaaatgattcaagaagccgaggaatatcgtg 15594253  T
Q  277 ctgaagatgagaaatt 292  Q
    ||||||||||||||||    
T  15594252 ctgaagatgagaaatt 15594237  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 204 - 292
Target Start/End: Complemental strand, 30774539 - 30774451
Alignment:
Q  204 ataaccaattacaaagaaagactatcaacagaagaaattaagaaaatgattgaagaagctgataattaccgtgctgaagatgagaaatt 292  Q
    ||||||||  ||||||||||  |||| | |||||||||||| ||||||||| ||||||||    | |||||||||||||||||||||||    
T  30774539 ataaccaacgacaaagaaaggttatccagagaagaaattaacaaaatgattcaagaagctagagagtaccgtgctgaagatgagaaatt 30774451  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 223
Target Start/End: Original strand, 12246207 - 12246309
Alignment:
Q  121 atgtatgttttgctatcgatgaaaatggcattttgacagtctctgccacagaagtttccaccggcaatacaaataagataataataaccaattacaaaga 220  Q
    |||||||||||||||| | ||||||||| ||||||||||| ||||| ||  |   |||  | |||||| ||||| |||| | |||||| |||||||||||    
T  12246207 atgtatgttttgctattggtgaaaatggtattttgacagtttctgctacgaatagttcttctggcaattcaaatgagattacaataactaattacaaaga 12246306  T
Q  221 aag 223  Q
    |||    
T  12246307 aag 12246309  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 166
Target Start/End: Complemental strand, 7541593 - 7541548
Alignment:
Q  121 atgtatgttttgctatcgatgaaaatggcattttgacagtctctgc 166  Q
    |||| ||||||||||| ||||||||||| ||||||||||| |||||    
T  7541593 atgtttgttttgctattgatgaaaatggtattttgacagtttctgc 7541548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 265
Target Start/End: Original strand, 16658318 - 16658462
Alignment:
Q  121 atgtatgttttgctatcgatgaaaatggcattttgacagtctctgccacagaagtttccaccggcaatacaaataagataataataaccaattacaaaga 220  Q
    ||||||||||||   ||||||||||||| ||  | || || ||||| |  ||||| || || || |||||||| ||||| |  ||||||||| | |||||    
T  16658318 atgtatgttttgacctcgatgaaaatggtatcctaactgtttctgctaaggaagtatctacaggaaatacaaacaagatcaccataaccaatgaaaaaga 16658417  T
Q  221 aagactatcaacagaagaaattaagaaaatgattgaagaagctga 265  Q
    |||| | |||||    |||||||| ||||||||||||||||||||    
T  16658418 aagattgtcaaccttggaaattaaaaaaatgattgaagaagctga 16658462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 43744283 - 43744230
Alignment:
Q  24 gtttatgagggggagagaactagagccagcgacaacaatctacttggttctttt 77  Q
    ||||||||||| |||||| | ||||| || ||||||||||| ||||||||||||    
T  43744283 gtttatgagggtgagagagcaagagcaagtgacaacaatctgcttggttctttt 43744230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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