View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21388_low_1 (Length: 1022)
Name: NF21388_low_1
Description: NF21388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21388_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 499; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 413 - 999
Target Start/End: Complemental strand, 476119 - 475518
Alignment:
| Q |
413 |
gagtgtagcctattgtatagagaaattgatacaatttttcattctttaaatttaacacagttttttcaatcaacagtgtaatatatattcatcagctaaa |
512 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
476119 |
gagtgtagcctattgtatagagaaattgatacaatttttcattctttaaatttaacacagttttttcaatcaacagtgtaatatatattcatcagctaaa |
476020 |
T |
|
| Q |
513 |
aattttataatttacctttcttgaagattcattttaaaaatttcatttgtctcataattaaccatt--ttatgctcttaattttgtatttctctcacaat |
610 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
476019 |
aaatttataatttacctttcttgaagattcattttaaaaatttcatttgtctcataattaaccattgattatgctcttaagtttgtatttctctcacaat |
475920 |
T |
|
| Q |
611 |
aaatgaatacataaatgacaaagagtaaaaaagtaacttcaactgttattctcttcagctatatcatggaaagcnnnnnnnnnnnngatacagtgatgat |
710 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
475919 |
aaatgaatacataaatgacaaagagtaaaaaagtaacttcaactgttattctcttcagctatatcatggaaagcaaacataaaaaagatacagtgatgat |
475820 |
T |
|
| Q |
711 |
gacattaattttaatta-------------tggaatgacattcattgattcctttttcaatcaacgttgtaatgtagattcatctgctaaaagagtttct |
797 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
475819 |
gacattaattttaattaagctaaaaaattatggaatgacattcattgattcctttttcaatcaacgttgtaatgtagattcatctgctaaaagagtttct |
475720 |
T |
|
| Q |
798 |
ttcaaatcggttatcaaaattttcacttcctctgtctgagtaaccatagattttggatctatcttctgtttgacatggactacatcttccgctttacccc |
897 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
475719 |
ttcaaatcggttatcaaaattttcacttcctctgtctgagtaaccatagattttggatctatcttctgtttgacatggactacatcttccgctttacccc |
475620 |
T |
|
| Q |
898 |
aaagcacgacatacaagccaatgatcactccaattgcgcctatcatgctaactcacatgaagcataagcatcagttaattagattaataatttaagttgt |
997 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
475619 |
aaagcacgacatacaagccaatgatcactccaattgcgcctatcaagctaactcacatgaagcataagcatcagttaattagattaataatttaagttgt |
475520 |
T |
|
| Q |
998 |
aa |
999 |
Q |
| |
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|| |
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| T |
475519 |
aa |
475518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 45 - 419
Target Start/End: Complemental strand, 476518 - 476144
Alignment:
| Q |
45 |
ttatatctggccttatggatgtcaaataacttgccagcaaaggctcaatatattcttcagtatcatcattgtgtaatccttgaataggatctattgggaa |
144 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
476518 |
ttatatctggccttatggatgtcaaataacttgccaacaaaggctcaatatattcttcagtatcatcattgtgtaatccttgaataggatctattgggaa |
476419 |
T |
|
| Q |
145 |
aactggatggcttgaagaccaagttatttgtcttagttaataaatatagaaaatactgtctttgacacaaagtgatatcttgttctgaatgtacagtttc |
244 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
476418 |
aactggatggcttgaagaccaagttatttgtcttagttaataaatatagaaaatactgtctttgacacaaagtgatatcttgttctgaatgtacagtttc |
476319 |
T |
|
| Q |
245 |
tgttcctaggaagaattttaaaaatccaaagtccttgatctcaaaatcatcttgaaattttcctttggttgcttcaaattccccactaaattgtttcctg |
344 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
476318 |
tgttcctaggaagaattttaaaaatccaaagtccttgatctcaaaatcatcttgaaattttcctttggttgcttcaaattccccactaaattgtttcctg |
476219 |
T |
|
| Q |
345 |
tgagaactcactctatcatcaacatagactaagagtggtgtaaaagatgaagctagtttattagtgaagagtgta |
419 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
476218 |
tgagaactcactctatcatcaacatagactaagagtggtgtaaaagatgaagctagtttattagtgaagagtgta |
476144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 815 - 940
Target Start/End: Complemental strand, 449745 - 449620
Alignment:
| Q |
815 |
aattttcacttcctctgtctgagtaaccatagattttggatctatcttctgtttgacatggactacatcttccgctttaccccaaagcacgacatacaag |
914 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||| ||||||||| ||| |||| ||||| ||||| |||||||||||||| || | ||||||| |
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|
| T |
449745 |
aattttcacttcctctgtctcattaaccatagattttggaactatcttctctttaacatcaactacttcttcagctttaccccaaagtacaatatacaag |
449646 |
T |
|
| Q |
915 |
ccaatgatcactccaattgcgcctat |
940 |
Q |
| |
|
|||||||||||||||||||||||||| |
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| T |
449645 |
ccaatgatcactccaattgcgcctat |
449620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 841 - 988
Target Start/End: Complemental strand, 469129 - 468982
Alignment:
| Q |
841 |
ccatagattttggatctatcttctgtttgacatggactacatcttccgctttaccccaaagcacgacatacaagccaatgatcactccaattgcgcctat |
940 |
Q |
| |
|
|||||||||||||| |||| |||| ||| | || ||||| ||||| |||||||||||||| || | |||||| |||||||||||||||||||| ||||| |
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|
| T |
469129 |
ccatagattttggaactatattctctttaatatcaactacttcttcagctttaccccaaagtacaatatacaaaccaatgatcactccaattgcacctat |
469030 |
T |
|
| Q |
941 |
catgctaactcacatgaagcataagcatcagttaattagattaataat |
988 |
Q |
| |
|
|| |||||| ||||||||| | ||| |||| ||| ||||||||||||| |
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| T |
469029 |
caagctaacacacatgaagtagaagaatcatttagttagattaataat |
468982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 879 - 1004
Target Start/End: Complemental strand, 457977 - 457851
Alignment:
| Q |
879 |
acatcttccgctttaccccaaagcacgacatacaagccaatgatcactccaattgcgcctatcatgct-aactcacatgaagcataagcatcagttaatt |
977 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||| || |||||||| ||||| ||||| ||| || |
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|
| T |
457977 |
acatcttcagctttaccccaaagcacagtatacaagccaatgatcactccaattgcgcctattaagctaaaaacacatgaatcataaacatcatttagtt |
457878 |
T |
|
| Q |
978 |
agattaataatttaagttgtaatgttc |
1004 |
Q |
| |
|
||| |||||||| |||||||||||||| |
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|
| T |
457877 |
agactaataattcaagttgtaatgttc |
457851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 476583 - 476539
Alignment:
| Q |
1 |
caaactagggaagtgtgctgaggttggtgaatctagaaattgact |
45 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
476583 |
caaactagggaagtgtgctgaggttggtgaatctagaaattgact |
476539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 849 - 949
Target Start/End: Complemental strand, 481303 - 481203
Alignment:
| Q |
849 |
tttggatctatcttctgtttgacatggactacatcttccgctttaccccaaagcacgacatacaagccaatgatcactccaattgcgcctatcatgctaa |
948 |
Q |
| |
|
||||||||| |||||| |||||| | |||||||||| |||||||||||||| || |||||| || ||||||||||||||||| || |||| ||||| |
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|
| T |
481303 |
tttggatctgtcttctctttgacttcagctacatcttcagctttaccccaaagtacagtatacaaacctatgatcactccaattgcaccaatcaagctaa |
481204 |
T |
|
| Q |
949 |
c |
949 |
Q |
| |
|
| |
|
|
| T |
481203 |
c |
481203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 3e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 838 - 986
Target Start/End: Original strand, 27489261 - 27489411
Alignment:
| Q |
838 |
taaccatagattttggatctatcttctgtttgacatggactacatcttccgctttaccccaaagcacgacatacaagccaatgatcactccaattgcgcc |
937 |
Q |
| |
|
|||| ||||||||| ||| | ||||| ||| |||| ||||||||||| ||||| |||||||| || | ||||||||||||||||||||||||||| || |
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|
| T |
27489261 |
taacgatagatttttgatttcccttctctttcacatcaactacatcttcagcttttccccaaagaacaatatacaagccaatgatcactccaattgcacc |
27489360 |
T |
|
| Q |
938 |
tatcatgc--taactcacatgaagcataagcatcagttaattagattaata |
986 |
Q |
| |
|
||||| || |||| |||||||||| ||| |||| ||| ||||||||||| |
|
|
| T |
27489361 |
tatcaagctataacaaacatgaagcagaagaatcatttagttagattaata |
27489411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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