View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21388_low_11 (Length: 339)
Name: NF21388_low_11
Description: NF21388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21388_low_11 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 16 - 339
Target Start/End: Complemental strand, 27832237 - 27831916
Alignment:
| Q |
16 |
atcaaaatataaaccatatatataccattagaaaataaatctttatgtaaatgttttgcattcattgcatacaaaacagcaagacaacacagaaaatctt |
115 |
Q |
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| T |
27832237 |
atcaaaatataaaccatatatataccattagaaaataaatcttcatgtaaattttttgcattcat-----acaaaacagcaagacaacacagaaaatctt |
27832143 |
T |
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| Q |
116 |
aatggagaaaatcttaaa---gtataatcttaatggnnnnnnnnnnnnnnnnnnnnnctaatcaatcttggcaatagtgttttcaaacatactttcgagc |
212 |
Q |
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| T |
27832142 |
aatggagaaattgttaaaaaagtataatcttaatggaaaaagaaaaaagaaaaaaaactaatcaatcttggcaatagtgttttcaaacatactttcgagc |
27832043 |
T |
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| Q |
213 |
tccttcaaatgatcctgacgaacgtctagttcatgctggtgattctcgtcaagcagatttttggcaattgaaattgcagcattgatcttcgttttctcta |
312 |
Q |
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| T |
27832042 |
tccttcaaatgatcctgaagaacgtctagttcatgctggtgattctcgtcaagcagatttttggcaattgtaattgcagcattgatcttcgttttctcta |
27831943 |
T |
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| Q |
313 |
gtgtggagagtttcaactgaatattct |
339 |
Q |
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| T |
27831942 |
gtgtggagagtttcaactgaatattct |
27831916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 194 - 328
Target Start/End: Complemental strand, 27849340 - 27849206
Alignment:
| Q |
194 |
ttcaaacatactttcgagctccttcaaatgatcctgacgaacgtctagttcatgctggtgattctcgtcaagcagatttttggcaattgaaattgcagca |
293 |
Q |
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| T |
27849340 |
ttcaaacatactttcaagatcctccaaatgatcctcaagaacatctacttcatgaaggtcattctcatcaagcaaattttttgccattctaattgcaaca |
27849241 |
T |
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| Q |
294 |
ttgatcttcgttttctctagtgtggagagtttcaa |
328 |
Q |
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| T |
27849240 |
ttcatcttcctgttctcttgtgtggagagcttcaa |
27849206 |
T |
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