View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21388_low_15 (Length: 255)
Name: NF21388_low_15
Description: NF21388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21388_low_15 |
 | |
|
| [»] scaffold0294 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 26)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 9 - 248
Target Start/End: Original strand, 5065540 - 5065779
Alignment:
| Q |
9 |
gatactactctctgcccctcctcatcttcaaaggagattaacgcctctctcttgtagagctgaatggtggattttgtgtaattttttaccaacaaatttg |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5065540 |
gatactactctctgcccctcctcatcttcaaaggagattaacgcctctctcttatagagctgaatggtggattttgtgtaattttttaccaacaaatttg |
5065639 |
T |
|
| Q |
109 |
tgaggccatcagatgctatgttatccggggttgaagaatagacaatgcatatcattattgtcttcaacatacgcccttccatttgagggacttcaaaagt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
5065640 |
tgaggccatcagatgctatgttatccggggttgaagaatagacaatgcatatcattattgtcttcaacatacgccctttcatttgagggacttcaaaagt |
5065739 |
T |
|
| Q |
209 |
tacagaagaaccttcgcaattgtaagttacagaataatct |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5065740 |
tacagaagaaccttcgcaattgtaagttacagaagaatct |
5065779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 63 - 248
Target Start/End: Complemental strand, 5253699 - 5253514
Alignment:
| Q |
63 |
tagagctgaatggtggattttgtgtaattttttaccaacaaatttgtgaggccatcagatgctatgttatccggggttgaagaatagacaatgcatatca |
162 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| | ||||||| ||||||||||| |||||||||| |||| |
|
|
| T |
5253699 |
tagagctgaatggtggcctttgtgtaattttttaccaacaaatttgtgaagccatcagatgttgtgttatctggggttgaagattagacaatgcttatct |
5253600 |
T |
|
| Q |
163 |
ttattgtcttcaacatacgcccttccatttgagggacttcaaaagttacagaagaaccttcgcaattgtaagttacagaataatct |
248 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||| |||||| ||||||||||| ||||| |
|
|
| T |
5253599 |
ttattgtcttcaacatacgcccttccaattgagggactttaaaaggtacagaagaaccttcacaattgaaagttacagaagaatct |
5253514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 9 - 224
Target Start/End: Original strand, 5126720 - 5126935
Alignment:
| Q |
9 |
gatactactctctgcccctcctcatcttcaaaggagattaacgcctctctcttgtagagctgaatggtggattttgtgtaattttttaccaacaaatttg |
108 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| | ||||||||||| ||||| |||||||||| || ||||||||||| |||||||| ||| |
|
|
| T |
5126720 |
gatactactctctccccctcctcatcttcaaaggagactgctgcctctctcttatagagttgaatggtggccttcgtgtaatttttcaccaacaagcttg |
5126819 |
T |
|
| Q |
109 |
tgaggccatcagatgctatgttatccggggttgaagaatagacaatgcatatcattattgtcttcaacatacgcccttccatttgagggacttcaaaagt |
208 |
Q |
| |
|
| |||||||| |||| |||||||||| ||||||||||||||||||||||||||||| | |||||||| ||||||||| || |||||| ||||||||||| |
|
|
| T |
5126820 |
taaggccatctgatgttatgttatccaaggttgaagaatagacaatgcatatcattactttcttcaacgtacgccctttcacttgaggtacttcaaaagt |
5126919 |
T |
|
| Q |
209 |
tacagaagaaccttcg |
224 |
Q |
| |
|
||| |||||||||||| |
|
|
| T |
5126920 |
taccgaagaaccttcg |
5126935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 9 - 237
Target Start/End: Complemental strand, 5346233 - 5346005
Alignment:
| Q |
9 |
gatactactctctgcccctcctcatcttcaaaggagattaacgcctctctcttgtagagctgaatggtggattttgtgtaattttttaccaacaaatttg |
108 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||| | || |||||||||||||| ||||||||||| | |||||||||||||| |||||||| ||| |
|
|
| T |
5346233 |
gatacaactctctggccctcctcatcttcaaaggcggctactgcctctctcttgtatagctgaatggtagcctttgtgtaatttttcaccaacaagtttc |
5346134 |
T |
|
| Q |
109 |
tgaggccatcagatgctatgttatccggggttgaagaatagacaatgcatatcattattgtcttcaacatacgcccttccatttgagggacttcaaaagt |
208 |
Q |
| |
|
| ||||||||||||| ||| ||||||| |||||||||||||||| |||||| |||||||||||||||| |||||||||| |||||| ||||||||||| |
|
|
| T |
5346133 |
tcaggccatcagatgttatattatccgaagttgaagaatagacaacacatatcgttattgtcttcaacattcgcccttccacttgaggaacttcaaaagt |
5346034 |
T |
|
| Q |
209 |
tacagaagaaccttcgcaattgtaagtta |
237 |
Q |
| |
|
|||||||||||||| ||||| |||||| |
|
|
| T |
5346033 |
aacagaagaaccttcagaattgaaagtta |
5346005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 9 - 230
Target Start/End: Complemental strand, 5177943 - 5177722
Alignment:
| Q |
9 |
gatactactctctgcccctcctcatcttcaaaggagattaacgcctctctcttgtagagctgaatggtggattttgtgtaattttttaccaacaaatttg |
108 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||| ||| ||||||||||| || ||||||||||||| |||||||||||| || |||||||| |||| |
|
|
| T |
5177943 |
gatactactctctgaccctcttcatcttcaaaggaggctaatgcctctctcttataaagctgaatggtggcttttgtgtaattcttaaccaacaagtttg |
5177844 |
T |
|
| Q |
109 |
tgaggccatcagatgctatgttatccggggttgaagaatagacaatgcatatcattattgtcttcaacatacgcccttccatttgagggacttcaaaagt |
208 |
Q |
| |
|
||||||| |||| ||| |||||| |||||||||||||| ||||||||||||| |||||||| || | | |||||||| ||||||||||||||| | |
|
|
| T |
5177843 |
caaggccatttgatgttatattatccagggttgaagaatagtcaatgcatatcatcattgtctttaaagtgcacccttccacttgagggacttcaaacat |
5177744 |
T |
|
| Q |
209 |
tacagaagaaccttcgcaattg |
230 |
Q |
| |
|
||| |||||||||||||||||| |
|
|
| T |
5177743 |
taccgaagaaccttcgcaattg |
5177722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 10 - 223
Target Start/End: Original strand, 5242604 - 5242817
Alignment:
| Q |
10 |
atactactctctgcccctcctcatcttcaaaggagattaacgcctctctcttgtagagctgaatggtggattttgtgtaattttttaccaacaaatttgt |
109 |
Q |
| |
|
||||||||||| |||||| |||||||||||||| | || |||||||||||||||||||||||||||| |||||||||||||| || ||||| ||| |
|
|
| T |
5242604 |
atactactctcagccccttctcatcttcaaaggcggctactgcctctctcttgtagagctgaatggtggcctttgtgtaatttttcactaacaagtttcc |
5242703 |
T |
|
| Q |
110 |
gaggccatcagatgctatgttatccggggttgaagaatagacaatgcatatcattattgtcttcaacatacgcccttccatttgagggacttcaaaagtt |
209 |
Q |
| |
|
||||||||||||| ||| |||||| ||||||||||||||| |||||| |||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
5242704 |
aaggccatcagatgttatactatccgaagttgaagaatagacagcacatatcgttattgtcttcaacattcgcccttccacttgagggacttcaaaagta |
5242803 |
T |
|
| Q |
210 |
acagaagaaccttc |
223 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
5242804 |
acagaagaaccttc |
5242817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 9 - 230
Target Start/End: Complemental strand, 5279768 - 5279547
Alignment:
| Q |
9 |
gatactactctctgcccctcctcatcttcaaaggagattaacgcctctctcttgtagagctgaatggtggattttgtgtaattttttaccaacaaatttg |
108 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||| ||| ||||||||||| || ||||||||||||| |||||||||||| || |||||||| |||| |
|
|
| T |
5279768 |
gatactactctctgaccctcttcatcttcaaaggaggctaatgcctctctcttataaagctgaatggtggcttttgtgtaattcttcaccaacaagtttg |
5279669 |
T |
|
| Q |
109 |
tgaggccatcagatgctatgttatccggggttgaagaatagacaatgcatatcattattgtcttcaacatacgcccttccatttgagggacttcaaaagt |
208 |
Q |
| |
|
||||||| |||| ||| |||||| |||||||||||||| ||||||||||||| | |||||| || | | |||||||| ||||||||||||||| | |
|
|
| T |
5279668 |
caaggccatttgatgttatattatccagggttgaagaatagtcaatgcatatcatcaatgtctttaaagtgcacccttccacttgagggacttcaaacat |
5279569 |
T |
|
| Q |
209 |
tacagaagaaccttcgcaattg |
230 |
Q |
| |
|
||| |||||||||||||||||| |
|
|
| T |
5279568 |
taccgaagaaccttcgcaattg |
5279547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 9 - 230
Target Start/End: Original strand, 5688994 - 5689215
Alignment:
| Q |
9 |
gatactactctctgcccctcctcatcttcaaaggagattaacgcctctctcttgtagagctgaatggtggattttgtgtaattttttaccaacaaatttg |
108 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||| ||| ||||| ||||| || ||||||||||||| |||||||||||| || |||||||| |||| |
|
|
| T |
5688994 |
gatactactctctgtccctcttcatcttcaaaggagactaatgcctcgctcttataaagctgaatggtggcttttgtgtaattcttcaccaacaagtttg |
5689093 |
T |
|
| Q |
109 |
tgaggccatcagatgctatgttatccggggttgaagaatagacaatgcatatcattattgtcttcaacatacgcccttccatttgagggacttcaaaagt |
208 |
Q |
| |
|
||||||| |||| |||||||||| |||||| ||||||| | ||||||||||| | |||||| || | |||||||||| ||||||||||||||| | |
|
|
| T |
5689094 |
caaggccatttgatgttatgttatccagggttgtagaatagtcgatgcatatcatcaatgtctttaaagtgcgcccttccacttgagggacttcaaacat |
5689193 |
T |
|
| Q |
209 |
tacagaagaaccttcgcaattg |
230 |
Q |
| |
|
||| |||||||||||||||||| |
|
|
| T |
5689194 |
taccgaagaaccttcgcaattg |
5689215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 25 - 223
Target Start/End: Original strand, 5136026 - 5136221
Alignment:
| Q |
25 |
cctcctcatcttcaaaggagattaacgcctctctcttgtagagctgaatggtggattttgtgtaattttttaccaacaaatttgtgaggccatcagatgc |
124 |
Q |
| |
|
|||||||||||||||||||| ||| || || |||||||||||||||||||||| |||||||||||||||||||||| |||| | |||||| |||| |
|
|
| T |
5136026 |
cctcctcatcttcaaaggaggctaatgcttcgctcttgtagagctgaatggtggcctttgtgtaattttttaccaacacatttttaaggccacttgatgt |
5136125 |
T |
|
| Q |
125 |
tatgttatccggggttgaagaatagacaatgcatatcattattgtcttcaacatacgcccttccatttgagggacttcaaaagttacagaagaaccttc |
223 |
Q |
| |
|
||||||||| |||||||||| |||||||||||| ||| ||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
5136126 |
tatgttatctggggttgaagtatagacaatgca---catcattgtcttcaagttacgcccttccacttgagggacttctaaagttacagaagaaccttc |
5136221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 25 - 223
Target Start/End: Original strand, 5100925 - 5101120
Alignment:
| Q |
25 |
cctcctcatcttcaaaggagattaacgcctctctcttgtagagctgaatggtggattttgtgtaattttttaccaacaaatttgtgaggccatcagatgc |
124 |
Q |
| |
|
||||||||||||||||||||| ||| ||||| ||||| |||||||||||||||| |||||||||||||| || |||| |||| | |||||| |||| |
|
|
| T |
5100925 |
cctcctcatcttcaaaggagactaatgcctcgctcttatagagctgaatggtggcctttgtgtaatttttcactaacacatttttaaggccacttgatgt |
5101024 |
T |
|
| Q |
125 |
tatgttatccggggttgaagaatagacaatgcatatcattattgtcttcaacatacgcccttccatttgagggacttcaaaagttacagaagaaccttc |
223 |
Q |
| |
|
||||||||| |||||||||| |||||||||||| ||| ||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
5101025 |
tatgttatctggggttgaagtatagacaatgca---catcattgtcttcaagttacgcccttccacttgagggacttctaaagttacagaagaaccttc |
5101120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 9 - 223
Target Start/End: Original strand, 5352954 - 5353165
Alignment:
| Q |
9 |
gatactactctctgcccctcctcatcttcaaaggagattaacgcctctctcttgtagagctgaatggtggattttgtgtaattttttaccaacaaatttg |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| ||||||||||| || ||||||||||| | |||||||||||||||| ||||| |||| |
|
|
| T |
5352954 |
gatactactctctgcccctcctcatcttcaaaggaaattaatgcctctctcttataaagctgaatggtagcctttgtgtaattttttagcaacacatttt |
5353053 |
T |
|
| Q |
109 |
tgaggccatcagatgctatgttatccggggttgaagaatagacaatgcatatcattattgtcttcaacatacgcccttccatttgagggacttcaaaagt |
208 |
Q |
| |
|
| ||||||| || | |||||||| ||||||| | ||||| |||||| ||| ||||||||||| |||||||||||| ||||||| | |||||| |
|
|
| T |
5353054 |
taaggccatatgaagttatgttattttgggttgacgtatagataatgca---catcattgtcttcaagttacgcccttccaccagagggacatgaaaagt |
5353150 |
T |
|
| Q |
209 |
tacagaagaaccttc |
223 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
5353151 |
tacagaagaaccttc |
5353165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 5439206 - 5439004
Alignment:
| Q |
18 |
ctctgcccctcctcatcttcaaaggagattaacgcctctctcttgtagagctgaatggtggattttgtgtaattttttaccaacaaatttgtgaggccat |
117 |
Q |
| |
|
||||||||||||||||||||||| |||| || ||||| ||||| |||||||||||||||| ||||||| |||| | ||||| | |||| | |||| || |
|
|
| T |
5439206 |
ctctgcccctcctcatcttcaaaagagactacagcctcactcttatagagctgaatggtggcctttgtgtgatttatcaccaatacatttataaggctat |
5439107 |
T |
|
| Q |
118 |
cagatgctatgttatccggggttgaagaatagacaatgcatatcattattgtcttcaacatacgcccttccatttgagggacttcaaaagttacagaaga |
217 |
Q |
| |
|
| |||| |||||||||||| |||||||||||||||||||| ||| | || | |||| |||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
5439106 |
ctgatgttatgttatccggagttgaagaatagacaatgca---catcaatgacatcaaattacgcccttccacttgagggacttgaaaagttacagaaga |
5439010 |
T |
|
| Q |
218 |
accttc |
223 |
Q |
| |
|
|||||| |
|
|
| T |
5439009 |
accttc |
5439004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 220
Target Start/End: Complemental strand, 5398250 - 5398042
Alignment:
| Q |
9 |
gatactactctctgcccctcctcatcttcaaaggagattaacgcctctctcttgtagagctgaatggtggattttgtgtaattttttaccaacaaatttg |
108 |
Q |
| |
|
|||||||| || |||||||| |||| ||||||||||| ||||||||| ||||| |||||||||||||||| |||||||||||| | || |||| ||| |
|
|
| T |
5398250 |
gatactaccctttgcccctcttcatgttcaaaggagaataacgcctcactcttatagagctgaatggtggcctttgtgtaatttatcactaacatgtttt |
5398151 |
T |
|
| Q |
109 |
tgaggccatcagatgctatgttatccggggttgaagaatagacaatgcatatcattattgtcttcaacatacgcccttccatttgagggacttcaaaagt |
208 |
Q |
| |
|
| |||||| ||||| || |||||| | ||||||| ||| |||||||| ||| ||||||||||| |||||||||||| ||||| ||||||||||| |
|
|
| T |
5398150 |
taaggccactagatgttacattatccagagttgaagtatacacaatgca---catcattgtcttcaagttacgcccttccacatgaggaacttcaaaagt |
5398054 |
T |
|
| Q |
209 |
tacagaagaacc |
220 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
5398053 |
taaagaagaacc |
5398042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 9 - 223
Target Start/End: Original strand, 5156104 - 5156315
Alignment:
| Q |
9 |
gatactactctctgcccctcctcatcttcaaaggagattaacgcctctctcttgtagagctgaatggtggattttgtgtaattttttaccaacaaatttg |
108 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||| || ||||| ||||| || ||||||||||||| |||||||||||||| | |||| ||| |
|
|
| T |
5156104 |
gatactaccctctgcccctcttcatcttcaaaggaggccaatgcctcactcttataaagctgaatggtggcctttgtgtaatttttcaataacatgtttt |
5156203 |
T |
|
| Q |
109 |
tgaggccatcagatgctatgttatccggggttgaagaatagacaatgcatatcattattgtcttcaacatacgcccttccatttgagggacttcaaaagt |
208 |
Q |
| |
|
| |||||| | ||| || ||||| |||||||||| |||||||||||| ||| ||||||||||| |||||||||||| |||||| |||||||| | |
|
|
| T |
5156204 |
taaggccactacatgttacattatctggggttgaagtatagacaatgca---catcattgtcttcaagttacgcccttccacttgaggaacttcaaattt |
5156300 |
T |
|
| Q |
209 |
tacagaagaaccttc |
223 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
5156301 |
cacagaagaaccttc |
5156315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 9 - 223
Target Start/End: Complemental strand, 5372301 - 5372090
Alignment:
| Q |
9 |
gatactactctctgcccctcctcatcttcaaaggagattaacgcctctctcttgtagagctgaatggtggattttgtgtaattttttaccaacaaatttg |
108 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||| ||| || || ||||| || ||||||||||||| |||||||||||||| | |||| ||| |
|
|
| T |
5372301 |
gatactaccctctgcccctcttcatcttcaaaggagactaatgcttcactcttataaagctgaatggtggcctttgtgtaatttttcaataacatgtttt |
5372202 |
T |
|
| Q |
109 |
tgaggccatcagatgctatgttatccggggttgaagaatagacaatgcatatcattattgtcttcaacatacgcccttccatttgagggacttcaaaagt |
208 |
Q |
| |
|
| |||||| ||||| || |||||||| ||||||| | ||||| |||| ||| ||||||||||| |||||||||||| |||||| |||||||| | |
|
|
| T |
5372201 |
taaggccactagatgttacattatccggagttgaagtacagacattgca---cataattgtcttcaagttacgcccttccacttgaggaacttcaaattt |
5372105 |
T |
|
| Q |
209 |
tacagaagaaccttc |
223 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
5372104 |
cacagaagaaccttc |
5372090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 9 - 223
Target Start/End: Complemental strand, 5448813 - 5448602
Alignment:
| Q |
9 |
gatactactctctgcccctcctcatcttcaaaggagattaacgcctctctcttgtagagctgaatggtggattttgtgtaattttttaccaacaaatttg |
108 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||| | ||| | ||| ||||| |||| |||||||| | |||||||||||||| ||||||| |||| |
|
|
| T |
5448813 |
gatactaacctctgcccctccttatcttcaaaggaaactaatgtctcactcttatagatttgaatggtagcctttgtgtaatttttcaccaacacatttt |
5448714 |
T |
|
| Q |
109 |
tgaggccatcagatgctatgttatccggggttgaagaatagacaatgcatatcattattgtcttcaacatacgcccttccatttgagggacttcaaaagt |
208 |
Q |
| |
|
| |||||| ||||| || ||||| |||||||||| |||||||||||| ||| | || | |||| |||| |||||| |||||||||||||||||| |
|
|
| T |
5448713 |
taaggccactagatgttacattatctggggttgaagtatagacaatgca---catcaatgacgtcaattgacgctcttccacttgagggacttcaaaagt |
5448617 |
T |
|
| Q |
209 |
tacagaagaaccttc |
223 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
5448616 |
tacagaagaaccttc |
5448602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 9 - 223
Target Start/End: Complemental strand, 5351604 - 5351393
Alignment:
| Q |
9 |
gatactactctctgcccctcctcatcttcaaaggagattaacgcctctctcttgtagagctgaatggtggattttgtgtaattttttaccaacaaatttg |
108 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| | ||| ||||| ||||| |||||| ||||||||| |||||||||||||| || |||| ||| |
|
|
| T |
5351604 |
gatactaacctctgcccctcctcatcttcaaaggaaactaatgcctcactcttatagagccgaatggtggcctttgtgtaatttttcactaacatgtttt |
5351505 |
T |
|
| Q |
109 |
tgaggccatcagatgctatgttatccggggttgaagaatagacaatgcatatcattattgtcttcaacatacgcccttccatttgagggacttcaaaagt |
208 |
Q |
| |
|
| |||||| |||| || |||| | |||||||||| |||||| ||||| ||| ||||||||||| ||||||||||| |||||| |||||||| | |
|
|
| T |
5351504 |
taaggccacttgatgttacgttaccaggggttgaagtatagactatgca---catcattgtcttcaagtcacgcccttccacttgaggaacttcaaattt |
5351408 |
T |
|
| Q |
209 |
tacagaagaaccttc |
223 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
5351407 |
cacagaagaaacttc |
5351393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 9 - 205
Target Start/End: Original strand, 5072773 - 5072966
Alignment:
| Q |
9 |
gatactactctctgcccctcctcatcttcaaaggagattaacgcctctctcttgtagagctgaatggtggattttgtgtaattttttaccaacaaatttg |
108 |
Q |
| |
|
||||||| ||||| ||||| ||||||| ||||||| ||| ||||||||||| || || |||||||||| ||| ||||||||||| |||| ||| ||| |
|
|
| T |
5072773 |
gatactaatctctcgccctcatcatctttgaaggagactaatgcctctctcttatatagttgaatggtggctttagtgtaatttttcaccatcaagtttt |
5072872 |
T |
|
| Q |
109 |
tgaggccatcagatgctatgttatccggggttgaagaatagacaatgcatatcattattgtcttcaacatacgcccttccatttgagggacttcaaa |
205 |
Q |
| |
|
| ||||| || ||| ||| |||| || | |||||||||||||| ||||||| ||||||||||| || |||||||||| ||||||||||||||| |
|
|
| T |
5072873 |
taaggccgtctgatactacattatttggtggtgaagaatagacaacgcatatc---attgtcttcaatatgcgcccttccacttgagggacttcaaa |
5072966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 223
Target Start/End: Original strand, 23127401 - 23127612
Alignment:
| Q |
9 |
gatactactctctgcccctcctcatcttcaaaggagattaacgcctctctcttgtagagctgaatggtggattttgtgtaattttttaccaacaaatttg |
108 |
Q |
| |
|
||||||| |||| ||| ||||||||||| || |||| ||| | ||||||||| |||| ||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
23127401 |
gatactaagctcttcccttcctcatcttcgaacgagactaatgtctctctcttatagatctgaatggtaccctttgtgtaattttttaccaacacgtttt |
23127500 |
T |
|
| Q |
109 |
tgaggccatcagatgctatgttatccggggttgaagaatagacaatgcatatcattattgtcttcaacatacgcccttccatttgagggacttcaaaagt |
208 |
Q |
| |
|
| | |||||| || | |||||||| |||||||||| || ||||| || |||||||||||||| || ||||||||| |||||| |||||||| | |
|
|
| T |
23127501 |
taacgccatccgaggtaatgttatctggggttgaagtattgacaacaca---cattattgtcttcacgttatgcccttccacttgaggagcttcaaaact |
23127597 |
T |
|
| Q |
209 |
tacagaagaaccttc |
223 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
23127598 |
tacagaagaaccttc |
23127612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 223
Target Start/End: Complemental strand, 5098415 - 5098204
Alignment:
| Q |
9 |
gatactactctctgcccctcctcatcttcaaaggagattaacgcctctctcttgtagagctgaatggtggattttgtgtaattttttaccaacaaatttg |
108 |
Q |
| |
|
|||| ||| ||||| | |||||||||||||||||||| || ||||| ||||| |||||||||||||||| ||||||| ||||| || |||| ||| |
|
|
| T |
5098415 |
gatattaccctctggctctcctcatcttcaaaggagaccaatgcctcactcttatagagctgaatggtggcctttgtgtggtttttcactaacatgtttt |
5098316 |
T |
|
| Q |
109 |
tgaggccatcagatgctatgttatccggggttgaagaatagacaatgcatatcattattgtcttcaacatacgcccttccatttgagggacttcaaaagt |
208 |
Q |
| |
|
| |||||| ||| |||||| | |||||||||| |||||||||||| ||| ||||| ||||| |||| ||||||| ||| || |||| |||||| |
|
|
| T |
5098315 |
taaggccacttgatatcatgttagctggggttgaagtatagacaatgca---catcattgttttcaagctacggccttccacttggggaacttgaaaagt |
5098219 |
T |
|
| Q |
209 |
tacagaagaaccttc |
223 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
5098218 |
taccgaagaaccttc |
5098204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 223
Target Start/End: Original strand, 5180865 - 5181076
Alignment:
| Q |
9 |
gatactactctctgcccctcctcatcttcaaaggagattaacgcctctctcttgtagagctgaatggtggattttgtgtaattttttaccaacaaatttg |
108 |
Q |
| |
|
|||||||| ||||| ||||| ||||||||||| |||| ||||| || ||||| |||||||||||||| | |||||||||||||| || |||| ||| |
|
|
| T |
5180865 |
gatactaccctctgaccctcttcatcttcaaaagagactaacgtatcactcttatagagctgaatggtagcctttgtgtaatttttaactaacatgtttt |
5180964 |
T |
|
| Q |
109 |
tgaggccatcagatgctatgttatccggggttgaagaatagacaatgcatatcattattgtcttcaacatacgcccttccatttgagggacttcaaaagt |
208 |
Q |
| |
|
| |||||| |||| || |||| || |||||| |||||||| | | ||| ||||||||||| |||| ||||||| ||||||||||||||| |
|
|
| T |
5180965 |
taaggccacttgatgttacattatgtggagttgaattatagacaacg---agcatcattgtcttcaagttacgtccttccaccaaagggacttcaaaagt |
5181061 |
T |
|
| Q |
209 |
tacagaagaaccttc |
223 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
5181062 |
tacagaagaaccttc |
5181076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 223
Target Start/End: Complemental strand, 5427104 - 5426893
Alignment:
| Q |
9 |
gatactactctctgcccctcctcatcttcaaaggagattaacgcctctctcttgtagagctgaatggtggattttgtgtaattttttaccaacaaatttg |
108 |
Q |
| |
|
||||||||||| | |||||||||||||||||| || | ||| |||| ||||| || ||||||||| ||| |||||||||||||| | |||| || |
|
|
| T |
5427104 |
gatactactctttccccctcctcatcttcaaatgacactaatacctcactcttataaagctgaatgatggcctttgtgtaatttttcaataacatgattt |
5427005 |
T |
|
| Q |
109 |
tgaggccatcagatgctatgttatccggggttgaagaatagacaatgcatatcattattgtcttcaacatacgcccttccatttgagggacttcaaaagt |
208 |
Q |
| |
|
| |||||| ||| || ||| | |||||||||| |||||| ||||| ||| |||||||||| |||||||||||| ||| || |||| |||||| |
|
|
| T |
5427004 |
taaggccacttgatattacattaccaggggttgaagtatagactatgca---cataattgtcttcaggttacgcccttccacttgtggaacttgaaaagt |
5426908 |
T |
|
| Q |
209 |
tacagaagaaccttc |
223 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
5426907 |
tacagaagaaccttc |
5426893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 223
Target Start/End: Original strand, 5283429 - 5283514
Alignment:
| Q |
135 |
ggggttgaagaatagacaatgcatatcattattgtcttcaacatacgcccttccatttgagggacttcaaaagttacagaagaaccttc |
223 |
Q |
| |
|
|||||||||| |||||||||||| |||||| | |||||| ||| |||||| | ||||||||| ||||||||||||||||||||||| |
|
|
| T |
5283429 |
ggggttgaagtatagacaatgcacatcatt---gacttcaagttacacccttcaacttgagggacatcaaaagttacagaagaaccttc |
5283514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 135 - 223
Target Start/End: Original strand, 5256367 - 5256452
Alignment:
| Q |
135 |
ggggttgaagaatagacaatgcatatcattattgtcttcaacatacgcccttccatttgagggacttcaaaagttacagaagaaccttc |
223 |
Q |
| |
|
|||||||||| |||||||||||| |||||| | | |||| |||||||||| | || ||||||||||||||||||||||||||||| |
|
|
| T |
5256367 |
ggggttgaagtatagacaatgcacatcatt---gacatcaagttacgcccttcaacttcggggacttcaaaagttacagaagaaccttc |
5256452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 223
Target Start/End: Complemental strand, 5334340 - 5334172
Alignment:
| Q |
51 |
gcctctctcttgtagagctgaatggtggattttgtgtaattttttaccaacaaatttgtgaggccatcagatgctatgttatccggggttgaagaataga |
150 |
Q |
| |
|
||||| ||||| ||||| |||||||||| |||||||||||| | || |||| ||| | |||||| |||| || ||||| ||||||||| ||||| |
|
|
| T |
5334340 |
gcctcactcttatagagttgaatggtggcctttgtgtaatttatcactaacatgtttttaaggccacttgatg-tacattatctggggttgaattataga |
5334242 |
T |
|
| Q |
151 |
caatgcatatcattattgtcttcaacatacgcccttccatttgagggacttcaaaagttacagaagaaccttc |
223 |
Q |
| |
|
|||||| |||||| |||||||| ||| |||||||| |||||| |||||||| | |||||||||||||| |
|
|
| T |
5334241 |
aaatgcacatcatt---gtcttcaagttacccccttccacttgaggaacttcaaatttcacagaagaaccttc |
5334172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 130
Target Start/End: Original strand, 5124534 - 5124655
Alignment:
| Q |
9 |
gatactactctctgcccctcctcatcttcaaaggagattaacgcctctctcttgtagagctgaatggtggattttgtgtaattttttaccaacaaatttg |
108 |
Q |
| |
|
||||||| ||| ||||||||||| |||| ||| | || ||| || |||||||| ||||| |||||||| || ||||||||||| |||| || | || |
|
|
| T |
5124534 |
gatactaatctatgcccctcctcctcttgaaatgcgactaatgcatctctcttatagagttgaatggtccccttcgtgtaatttttcaccatcacagttt |
5124633 |
T |
|
| Q |
109 |
tgaggccatcagatgctatgtt |
130 |
Q |
| |
|
| |||||||| ||||||||||| |
|
|
| T |
5124634 |
taaggccatccgatgctatgtt |
5124655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 55 - 230
Target Start/End: Original strand, 22583424 - 22583599
Alignment:
| Q |
55 |
ctctcttgtagagctgaatggtggattttgtgtaattttttaccaacaaatttgtgaggccatcagatgctatgttatccggggttgaagaatagacaat |
154 |
Q |
| |
|
|||||||||||| ||||||||||| ||||| | |||||| |||||||| ||| ||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
22583424 |
ctctcttgtagaactgaatggtggcctttgtatgatttttcaccaacaaggctgtagggccatcggatcttatgttatccggggttgaagaatagacaat |
22583523 |
T |
|
| Q |
155 |
gcatatcattattgtcttcaacatacgcccttccatttgagggacttcaaaagttacagaagaaccttcgcaattg |
230 |
Q |
| |
|
||| |||||||||| ||||||||||||||||| || | |||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
22583524 |
gcagatcattattgacttcaacatacgccctttcactacagggactttaaaagttacagaagaaccttggcaattg |
22583599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 9 - 230
Target Start/End: Original strand, 36213012 - 36213230
Alignment:
| Q |
9 |
gatactactctctgcccctcctcatcttcaaaggagattaacgcctctctcttgtagagctgaatggtggattttgtgtaattttttaccaacaaatttg |
108 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||| ||| ||||||||||| |||| ||||||||| | ||||||| ||||||||||| || ||| |
|
|
| T |
36213012 |
gatactaatctctgcccctcctcatcttcaaatgagactaatgcctctctcttatagatctgaatggtagcctttgtgtgattttttaccatcacgtttt |
36213111 |
T |
|
| Q |
109 |
tgaggccatcagatgctatgttatccggggttgaagaatagacaatgcatatcattattgtcttcaacatacgcccttccatttgagggacttcaaaagt |
208 |
Q |
| |
|
| || ||||| ||||||||||| || || ||||||||||||||||| || |||||||||||| || |||| || |||| | ||||||| |||||| | |
|
|
| T |
36213112 |
taagtccatctgatgctatgttttctggagttgaagaatagacaataca---cattattgtctttaagttacgtccatccactcgagggacatcaaaaat |
36213208 |
T |
|
| Q |
209 |
tacagaagaaccttcgcaattg |
230 |
Q |
| |
|
|||||||||||||| ||||||| |
|
|
| T |
36213209 |
tacagaagaacctttgcaattg |
36213230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 15 - 223
Target Start/End: Original strand, 4319399 - 4319604
Alignment:
| Q |
15 |
actctctgcccctcctcatcttcaaaggagattaacgcctctctcttgtagagctgaatggtggattttgtgtaattttttaccaacaaatttgtgaggc |
114 |
Q |
| |
|
|||||||||| |||||||| |||||||||| ||| || |||||||| ||||| |||||||||| ||||||| |||| | || |||| |||| |||| |
|
|
| T |
4319399 |
actctctgccactcctcattttcaaaggaggataatgcttctctcttatagagttgaatggtggtctttgtgtgatttatcactaacacattttcaaggc |
4319498 |
T |
|
| Q |
115 |
catcagatgctatgttatccggggttgaagaatagacaatgcatatcattattgtcttcaacatacgcccttccatttgagggacttcaaaagttacaga |
214 |
Q |
| |
|
|||| |||| ||||| | ||| ||||||||||||||||||| ||||||||||||||| |||| ||||||| |||||||||||||||| ||||||| |
|
|
| T |
4319499 |
catctgatgttatgtcgtatgggcttgaagaatagacaatgca---cattattgtcttcaagctacgtccttccacttgagggacttcaaaaattacaga |
4319595 |
T |
|
| Q |
215 |
agaaccttc |
223 |
Q |
| |
|
||||||||| |
|
|
| T |
4319596 |
agaaccttc |
4319604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 47 - 222
Target Start/End: Complemental strand, 4362718 - 4362546
Alignment:
| Q |
47 |
taacgcctctctcttgtagagctgaatggtggattttgtgtaattttttaccaacaaatttgtgaggccatcagatgctatgttatccggggttgaagaa |
146 |
Q |
| |
|
||||||||||||||| ||||| |||||||||| ||||||| |||| | ||||||| |||| | |||||||| |||| ||||| || ||| |||||||| |
|
|
| T |
4362718 |
taacgcctctctcttatagagttgaatggtggtctttgtgtgatttatcaccaacacatttctaaggccatctgatgttatgtcatatgggcttgaagaa |
4362619 |
T |
|
| Q |
147 |
tagacaatgcatatcattattgtcttcaacatacgcccttccatttgagggacttcaaaagttacagaagaacctt |
222 |
Q |
| |
|
||||||||||| ||||||||||||||| ||| ||||||| |||||||||||||||| |||||||| |||||| |
|
|
| T |
4362618 |
tagacaatgca---cattattgtcttcaagctacatccttccacttgagggacttcaaaaattacagaataacctt |
4362546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 9 - 222
Target Start/End: Complemental strand, 4337106 - 4336896
Alignment:
| Q |
9 |
gatactactctctgcccctcctcatcttcaaaggagattaacgcctctctcttgtagagctgaatggtggattttgtgtaattttttaccaacaaatttg |
108 |
Q |
| |
|
||||| |||||||||| |||||||| ||| ||||| ||| ||||||||||| |||| |||||||||| ||||||| |||| | ||||||| |||| |
|
|
| T |
4337106 |
gataccactctctgccactcctcattttcgaaggacgataatgcctctctcttaaagagttgaatggtggtctttgtgtgatttatcaccaacacatttt |
4337007 |
T |
|
| Q |
109 |
tgaggccatcagatgctatgttatccggggttgaagaatagacaatgcatatcattattgtcttcaacatacgcccttccatttgagggacttcaaaagt |
208 |
Q |
| |
|
|||||||| |||| ||||| || ||| ||||||||||||||||||| ||| ||||||||||| |||| ||||||| ||||||||||||||| | |
|
|
| T |
4337006 |
gaaggccatctgatgttatgtcatttgggcttgaagaatagacaatgca---catcattgtcttcaagctacgtccttccacatgagggacttcaaaatt |
4336910 |
T |
|
| Q |
209 |
tacagaagaacctt |
222 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
4336909 |
tacagaataacctt |
4336896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 9 - 206
Target Start/End: Original strand, 4122735 - 4122929
Alignment:
| Q |
9 |
gatactactctctgcccctcctcatcttcaaaggagattaacgcctctctcttgtagagctgaatggtggattttgtgtaattttttaccaacaaatttg |
108 |
Q |
| |
|
||||| ||||||| || ||||||| ||| |||||| ||||||||||||||| ||||| |||||||||| ||||||| |||| | ||||||| |||| |
|
|
| T |
4122735 |
gataccactctcttccattcctcattttctaaggaggataacgcctctctcttatagagttgaatggtggtctttgtgtgatttatcaccaacacatttt |
4122834 |
T |
|
| Q |
109 |
tgaggccatcagatgctatgttatccggggttgaagaatagacaatgcatatcattattgtcttcaacatacgcccttccatttgagggacttcaaaa |
206 |
Q |
| |
|
|||||| | ||||||||| || ||| |||| |||||||||||||| ||| ||||||||||| |||| ||||||| |||||||||||||||| |
|
|
| T |
4122835 |
gaaggccaactgatgctatgccatttgggcttgatgaatagacaatgca---catcattgtcttcaagctacgtccttccacttgagggacttcaaaa |
4122929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 47 - 222
Target Start/End: Complemental strand, 4346529 - 4346350
Alignment:
| Q |
47 |
taacgcctctctcttgtagagctgaatggtggattttgtgtaattttttaccaacaaatttgtgaggccatcagatgc-------tatgttatccggggt |
139 |
Q |
| |
|
||||||||||||||| ||||| |||||||||| ||||||| |||| | ||||||| |||| | |||||||| |||| ||||| ||| ||| | |
|
|
| T |
4346529 |
taacgcctctctcttatagagttgaatggtggtctttgtgtgatttatcaccaacacatttttaaggccatctgatgtctgatgttatgtcatctgggct |
4346430 |
T |
|
| Q |
140 |
tgaagaatagacaatgcatatcattattgtcttcaacatacgcccttccatttgagggacttcaaaagttacagaagaacctt |
222 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| || | ||||||| ||||||||||||||| |||||||| |||||| |
|
|
| T |
4346429 |
tgaagaatagacaatgca---cattattgtcttcaagctatgtccttccacttgagggacttcaaagattacagaataacctt |
4346350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 99
Target Start/End: Complemental strand, 25569044 - 25568954
Alignment:
| Q |
9 |
gatactactctctgcccctcctcatcttcaaaggagattaacgcctctctcttgtagagctgaatggtggattttgtgtaattttttacca |
99 |
Q |
| |
|
||||||||| | ||||||||||| | ||||||||| | ||| |||||||||||||||| |||||||||||| || ||||||||||| |||| |
|
|
| T |
25569044 |
gatactactatatgcccctcctcgttttcaaaggaaactaatgcctctctcttgtagacctgaatggtggacttggtgtaatttttcacca |
25568954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 118
Target Start/End: Original strand, 4132706 - 4132815
Alignment:
| Q |
9 |
gatactactctctgcccctcctcatcttcaaaggagattaacgcctctctcttgtagagctgaatggtggattttgtgtaattttttaccaacaaatttg |
108 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||| || ||||||||||| |||||||||||||| | || |||| |||| | ||||||| |||| |
|
|
| T |
4132706 |
gatactactctctgccactcctcattttcaaaggaggcgaatgcctctctcttatagagctgaatggtagtcttcgtgtgatttatcaccaacacatttt |
4132805 |
T |
|
| Q |
109 |
tgaggccatc |
118 |
Q |
| |
|
| |||||||| |
|
|
| T |
4132806 |
ttaggccatc |
4132815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 219
Target Start/End: Original strand, 7884381 - 7884456
Alignment:
| Q |
141 |
gaagaatagacaatgcatatcattattgtcttcaacatacgcccttccatttgagggacttcaaaagttacagaagaac |
219 |
Q |
| |
|
||||||||| ||||||| ||| ||||||||||| |||||| |||| |||||| ||||| |||||||||||||||| |
|
|
| T |
7884381 |
gaagaataggcaatgca---catgattgtcttcaaagaacgcccgtccacttgaggtacttcgaaagttacagaagaac |
7884456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 9 - 223
Target Start/End: Original strand, 47985484 - 47985695
Alignment:
| Q |
9 |
gatactactctctgcccctcctcatcttcaaaggagattaacgcctctctcttgtagagctgaatggtggattttgtgtaattttttaccaacaaatttg |
108 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||||| | ||| ||||| ||||| |||||| ||| | |||||| |||| | || |||| ||| |
|
|
| T |
47985484 |
gatactactctctccccctcctcatctccaaaggagattaatgtctcactcttatagagttgaatgatggctcttgtgtgatttatcactaacacgtttt |
47985583 |
T |
|
| Q |
109 |
tgaggccatcagatgctatgttatccggggttgaagaatagacaatgcatatcattattgtcttcaacatacgcccttccatttgagggacttcaaaagt |
208 |
Q |
| |
|
| |||||||| |||| ||||| ||| | |||||||| |||||||||||| ||| |||||||| || || ||| ||||| |||||||||||||||||| |
|
|
| T |
47985584 |
taaggccatctgatgttatgtcatctgaggttgaagtatagacaatgca---catcattgtctttaagttatgcctttccacttgagggacttcaaaagt |
47985680 |
T |
|
| Q |
209 |
tacagaagaaccttc |
223 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
47985681 |
taccgaagaaccttc |
47985695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 9 - 223
Target Start/End: Original strand, 47994771 - 47994982
Alignment:
| Q |
9 |
gatactactctctgcccctcctcatcttcaaaggagattaacgcctctctcttgtagagctgaatggtggattttgtgtaattttttaccaacaaatttg |
108 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||||| | ||| ||||| ||||| |||||| ||| | |||||| |||| | || |||| ||| |
|
|
| T |
47994771 |
gatactactctctccccctcctcatctccaaaggagattaatgtctcactcttatagagttgaatgatggctcttgtgtgatttatcactaacacgtttt |
47994870 |
T |
|
| Q |
109 |
tgaggccatcagatgctatgttatccggggttgaagaatagacaatgcatatcattattgtcttcaacatacgcccttccatttgagggacttcaaaagt |
208 |
Q |
| |
|
| |||||||| |||| ||||| ||| | |||||||| |||||||||||| ||| |||||||| || || ||| ||||| |||||||||||||||||| |
|
|
| T |
47994871 |
taaggccatctgatgttatgtcatctgaggttgaagtatagacaatgca---catcattgtctttaagttatgcctttccacttgagggacttcaaaagt |
47994967 |
T |
|
| Q |
209 |
tacagaagaaccttc |
223 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
47994968 |
taccgaagaaccttc |
47994982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 9 - 223
Target Start/End: Original strand, 48004058 - 48004269
Alignment:
| Q |
9 |
gatactactctctgcccctcctcatcttcaaaggagattaacgcctctctcttgtagagctgaatggtggattttgtgtaattttttaccaacaaatttg |
108 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||||| | ||| ||||| ||||| |||||| ||| | |||||| |||| | || |||| ||| |
|
|
| T |
48004058 |
gatactactctctccccctcctcatctccaaaggagattaatgtctcactcttatagagttgaatgatggctcttgtgtgatttatcactaacacgtttt |
48004157 |
T |
|
| Q |
109 |
tgaggccatcagatgctatgttatccggggttgaagaatagacaatgcatatcattattgtcttcaacatacgcccttccatttgagggacttcaaaagt |
208 |
Q |
| |
|
| |||||||| |||| ||||| ||| | |||||||| |||||||||||| ||| |||||||| || || ||| ||||| |||||||||||||||||| |
|
|
| T |
48004158 |
taaggccatctgatgttatgtcatctgaggttgaagtatagacaatgca---catcattgtctttaagttatgcctttccacttgagggacttcaaaagt |
48004254 |
T |
|
| Q |
209 |
tacagaagaaccttc |
223 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
48004255 |
taccgaagaaccttc |
48004269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 9 - 223
Target Start/End: Original strand, 48013343 - 48013554
Alignment:
| Q |
9 |
gatactactctctgcccctcctcatcttcaaaggagattaacgcctctctcttgtagagctgaatggtggattttgtgtaattttttaccaacaaatttg |
108 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||||| | ||| ||||| ||||| |||||| ||| | |||||| |||| | || |||| ||| |
|
|
| T |
48013343 |
gatactactctctccccctcctcatctccaaaggagattaatgtctcactcttatagagttgaatgatggctcttgtgtgatttatcactaacacgtttt |
48013442 |
T |
|
| Q |
109 |
tgaggccatcagatgctatgttatccggggttgaagaatagacaatgcatatcattattgtcttcaacatacgcccttccatttgagggacttcaaaagt |
208 |
Q |
| |
|
| |||||||| |||| ||||| ||| | |||||||| |||||||||||| ||| |||||||| || || ||| ||||| |||||||||||||||||| |
|
|
| T |
48013443 |
taaggccatctgatgttatgtcatctgaggttgaagtatagacaatgca---catcattgtctttaagttatgcctttccacttgagggacttcaaaagt |
48013539 |
T |
|
| Q |
209 |
tacagaagaaccttc |
223 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
48013540 |
taccgaagaaccttc |
48013554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 145
Target Start/End: Original strand, 8016 - 8104
Alignment:
| Q |
57 |
ctcttgtagagctgaatggtggattttgtgtaattttttaccaacaaatttgtgaggccatcagatgctatgttatccggggttgaaga |
145 |
Q |
| |
|
||||| |||| ||||||||||| |||||||||||||| || |||| |||| | || ||||| | || ||||||||||| |||||||| |
|
|
| T |
8016 |
ctcttatagatctgaatggtggcctttgtgtaatttttcactaacacatttttaagaccatctggtgttatgttatccgcagttgaaga |
8104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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