View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21388_low_17 (Length: 238)

Name: NF21388_low_17
Description: NF21388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21388_low_17
NF21388_low_17
[»] chr6 (3 HSPs)
chr6 (18-105)||(1059541-1059628)
chr6 (143-207)||(1060532-1060596)
chr6 (97-133)||(1060480-1060516)


Alignment Details
Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 1059541 - 1059628
Alignment:
Q  18 tattcaagtggagtaaacatatatgaaaaaagataaataagtaaaatagacattaagatttttgagaggaaaatacacatcaagttag 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1059541 tattcaagtggagtaaacatatatgaaaaaagataaataagtaaaatagacattaagatttttgagaggaaaatacacatcaagttag 1059628  T

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Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 143 - 207
Target Start/End: Original strand, 1060532 - 1060596
Alignment:
Q  143 tcgatataggtggggtcatatcgacatgtgagtttctctttttttggagtcaacatgtgactatt 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1060532 tcgatataggtggggtcatatcgacatgtgagtttctctttttttggagtcaacatgtgactatt 1060596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 133
Target Start/End: Original strand, 1060480 - 1060516
Alignment:
Q  97 tcaagttagttatagagattttatatggaaaagaaat 133  Q
    ||||||||||||||||||||||||||| |||||||||    
T  1060480 tcaagttagttatagagattttatatgaaaaagaaat 1060516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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