View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21388_low_6 (Length: 395)

Name: NF21388_low_6
Description: NF21388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21388_low_6
NF21388_low_6
[»] scaffold0048 (3 HSPs)
scaffold0048 (247-381)||(83110-83244)
scaffold0048 (118-208)||(83308-83398)
scaffold0048 (15-101)||(83385-83471)
[»] chr3 (2 HSPs)
chr3 (263-383)||(13078927-13079047)
chr3 (274-378)||(27595626-27595730)
[»] chr5 (2 HSPs)
chr5 (265-378)||(32696856-32696968)
chr5 (255-377)||(18311097-18311218)
[»] chr8 (2 HSPs)
chr8 (269-343)||(7759729-7759803)
chr8 (263-297)||(29927864-29927898)
[»] scaffold0457 (1 HSPs)
scaffold0457 (263-340)||(9544-9621)
[»] chr7 (4 HSPs)
chr7 (311-368)||(10418855-10418912)
chr7 (263-371)||(13066233-13066341)
chr7 (265-297)||(21583312-21583344)
chr7 (265-297)||(21583865-21583897)
[»] chr1 (1 HSPs)
chr1 (254-331)||(13399137-13399214)


Alignment Details
Target: scaffold0048 (Bit Score: 115; Significance: 3e-58; HSPs: 3)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 247 - 381
Target Start/End: Complemental strand, 83244 - 83110
Alignment:
Q  247 aagtggttttacataatcaattacaaagattccttcaatttacgaatccaattgattattaatcttctatgctatgtaatcactctaaaacctccaatct 346  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||    
T  83244 aagtggttttacatagtcaattacaaagattccttcaatttacgaatccaactgatcattaatcttctatgctatgtaatcactgtaaaacctccaatct 83145  T
Q  347 tcaatccttcttgaaataggatcttccaaagtttt 381  Q
    ||||||||||||||||| |||||||||||||||||    
T  83144 tcaatccttcttgaaattggatcttccaaagtttt 83110  T

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Target: scaffold0048; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 118 - 208
Target Start/End: Complemental strand, 83398 - 83308
Alignment:
Q  118 aatcaatacataagttaattacgaaactatagtccatctcaaaccaattcctaaactttatacaaataattcgtaagacaagaaacaatac 208  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  83398 aatcaatacataagttaattatgaaactatagtccatctcaaaccaattcctatactttatacaaataattcgtaagacaagaaacaatac 83308  T

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Target: scaffold0048; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 15 - 101
Target Start/End: Complemental strand, 83471 - 83385
Alignment:
Q  15 aattaaacaatgataataagttaatccagctttgaataggtaattcacaattgaattattattagtcaatcaaaatcaatacataag 101  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  83471 aattaaacaatgataataagttaatccagctttgaataagtaattcacaattgaattattattactcaatcaaaatcaatacataag 83385  T

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Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 263 - 383
Target Start/End: Complemental strand, 13079047 - 13078927
Alignment:
Q  263 tcaattacaaagattccttcaatttacgaatccaattgattattaatcttctatgctatgtaatcactctaaaacctccaatcttcaatccttcttgaaa 362  Q
    |||| ||||||||||||||||||||||||||||||   || || ||||||||||| || |||||||||| |||||||||||||||||| ||||||||||     
T  13079047 tcaactacaaagattccttcaatttacgaatccaaccaatcataaatcttctatgataagtaatcactccaaaacctccaatcttcaagccttcttgaag 13078948  T
Q  363 taggatcttccaaagttttca 383  Q
    | |||||||  ||||||||||    
T  13078947 ttggatcttaaaaagttttca 13078927  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 378
Target Start/End: Original strand, 27595626 - 27595730
Alignment:
Q  274 gattccttcaatttacgaatccaattgattattaatcttctatgctatgtaatcactctaaaacctccaatcttcaatccttcttgaaataggatcttcc 373  Q
    |||||||| |||||  |||||||| ||||  | |||||||||||||| ||||  | |||||||||   |||||||||  ||||||||||| ||||| |||    
T  27595626 gattcctttaatttgtgaatccaactgatcctaaatcttctatgctaagtaactattctaaaaccaaaaatcttcaaatcttcttgaaattggatcatcc 27595725  T
Q  374 aaagt 378  Q
    |||||    
T  27595726 aaagt 27595730  T

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Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 265 - 378
Target Start/End: Complemental strand, 32696968 - 32696856
Alignment:
Q  265 aattacaaagattccttcaatttacgaatccaattgattattaatcttctatgctatgtaatcactctaaaacctccaatcttcaatccttcttgaaata 364  Q
    |||||||||||||||||||||||||||||||||   ||  | |||||  |||||||  ||| ||||| ||||| |||||||||||| ||||||||||||     
T  32696968 aattacaaagattccttcaatttacgaatccaaccaatcctaaatctcatatgctaa-taaccactccaaaacatccaatcttcaagccttcttgaaatt 32696870  T
Q  365 ggatcttccaaagt 378  Q
    ||||||||||||||    
T  32696869 ggatcttccaaagt 32696856  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 377
Target Start/End: Complemental strand, 18311218 - 18311097
Alignment:
Q  255 ttacataatcaattacaaagattccttcaatttacgaatccaattgattattaatcttctatgctatgtaatcactctaaaacctccaatcttcaatcct 354  Q
    ||||||| |||| ||||||||||| ||| |||||||||| |||  |||  | ||||||||| |||| |||| |||||||||| ||||||| |||||  ||    
T  18311218 ttacatagtcaactacaaagattcattcgatttacgaattcaaccgatcgtaaatcttcta-gctaagtaaccactctaaaatctccaatgttcaaatct 18311120  T
Q  355 tcttgaaataggatcttccaaag 377  Q
     ||| |||  |||||||||||||    
T  18311119 ccttaaaactggatcttccaaag 18311097  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 269 - 343
Target Start/End: Original strand, 7759729 - 7759803
Alignment:
Q  269 acaaagattccttcaatttacgaatccaattgattattaatcttctatgctatgtaatcactctaaaacctccaa 343  Q
    |||||||||| || ||||||||||||||||||||| | |||||||||||||| |||| ||||| ||| |||||||    
T  7759729 acaaagattcttttaatttacgaatccaattgattctaaatcttctatgctaagtaaccactccaaatcctccaa 7759803  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 297
Target Start/End: Complemental strand, 29927898 - 29927864
Alignment:
Q  263 tcaattacaaagattccttcaatttacgaatccaa 297  Q
    |||||||||||||||||||||||||||||||||||    
T  29927898 tcaattacaaagattccttcaatttacgaatccaa 29927864  T

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Target: scaffold0457 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0457
Description:

Target: scaffold0457; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 263 - 340
Target Start/End: Complemental strand, 9621 - 9544
Alignment:
Q  263 tcaattacaaagattccttcaatttacgaatccaattgattattaatcttctatgctatgtaatcactctaaaacctc 340  Q
    ||||||||||||||||||| |||||| ||||||||  |||  | |||||| ||||||| | |||||||| ||||||||    
T  9621 tcaattacaaagattcctttaatttatgaatccaaccgatcctaaatcttatatgctaaggaatcactccaaaacctc 9544  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 311 - 368
Target Start/End: Complemental strand, 10418912 - 10418855
Alignment:
Q  311 ttctatgctatgtaatcactctaaaacctccaatcttcaatccttcttgaaataggat 368  Q
    |||||||||| ||||||| || ||| |||||||||||||| ||| |||||||||||||    
T  10418912 ttctatgctaagtaatcattccaaatcctccaatcttcaagcctacttgaaataggat 10418855  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 371
Target Start/End: Complemental strand, 13066341 - 13066233
Alignment:
Q  263 tcaattacaaagattccttcaatttacgaatccaattgattattaatcttctatgctatgtaatcactctaaaacctccaatcttcaatccttcttgaaa 362  Q
    ||||||| || ||||| ||||||||| ||||||||   || |   ||||||||||||| |||||||||| |||||||| |||||| || |||  ||||||    
T  13066341 tcaattataatgattcattcaatttatgaatccaaccaatcaaatatcttctatgctaagtaatcactccaaaacctctaatctttaagcctctttgaaa 13066242  T
Q  363 taggatctt 371  Q
    | |||||||    
T  13066241 ttggatctt 13066233  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 297
Target Start/End: Complemental strand, 21583344 - 21583312
Alignment:
Q  265 aattacaaagattccttcaatttacgaatccaa 297  Q
    |||||||||||||||||||||||| ||||||||    
T  21583344 aattacaaagattccttcaatttaagaatccaa 21583312  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 297
Target Start/End: Complemental strand, 21583897 - 21583865
Alignment:
Q  265 aattacaaagattccttcaatttacgaatccaa 297  Q
    |||||||||||||||||||||||| ||||||||    
T  21583897 aattacaaagattccttcaatttaagaatccaa 21583865  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 331
Target Start/End: Complemental strand, 13399214 - 13399137
Alignment:
Q  254 tttacataatcaattacaaagattccttcaatttacgaatccaattgattattaatcttctatgctatgtaatcactc 331  Q
    |||||| |||||||||||||||||| || ||| ||| |||||||  |||  | || ||||||||||| ||||||||||    
T  13399214 tttacaaaatcaattacaaagattctttgaatctacaaatccaaccgatcctaaaccttctatgctaagtaatcactc 13399137  T

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