View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21389_low_1 (Length: 639)
Name: NF21389_low_1
Description: NF21389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21389_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 82; Significance: 2e-38; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 452 - 541
Target Start/End: Original strand, 21304659 - 21304748
Alignment:
| Q |
452 |
ccaaagatcaataaaccaaaaaatattacaaatgaaccgtttaatcaattaagtggacaacaaaaagtgaaatattgagtccgaacagtt |
541 |
Q |
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| T |
21304659 |
ccaaagatcaatgaaccaaaaaatattacaaatgaaccgtttaatcaattaagtggacaacaaaaagtgaattattgagtccgaacagtt |
21304748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 194 - 257
Target Start/End: Original strand, 21205245 - 21205308
Alignment:
| Q |
194 |
ccaaacttcaaggtgttacttcttcctttgctcatgtttttggttgttttgtttatatgtcttg |
257 |
Q |
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| T |
21205245 |
ccaaactccaaggttttacttcttcctttgctcatgtttctggttgttttatttatatgtcttg |
21205308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 191 - 243
Target Start/End: Original strand, 21155423 - 21155475
Alignment:
| Q |
191 |
gaaccaaacttcaaggtgttacttcttcctttgctcatgtttttggttgtttt |
243 |
Q |
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| T |
21155423 |
gaaccaaactccaaggtgttacttcttcctttgctcatgtttctggttgtttt |
21155475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 202 - 257
Target Start/End: Original strand, 21189196 - 21189251
Alignment:
| Q |
202 |
caaggtgttacttcttcctttgctcatgtttttggttgttttgtttatatgtcttg |
257 |
Q |
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| T |
21189196 |
caaggtgttacttcttcatttgctcatgtttctagttgttttatttatatgtcttg |
21189251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 96
Target Start/End: Original strand, 33714275 - 33714335
Alignment:
| Q |
36 |
tacaaataatgagcctgtcaatgagaatgcttctccttctcataaaggaaataaagacccc |
96 |
Q |
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| T |
33714275 |
tacaaataatgagcctgtcaaagagaatgcttctctttctcccaaaggaataaaagacccc |
33714335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 216 - 256
Target Start/End: Original strand, 21295904 - 21295944
Alignment:
| Q |
216 |
ttcctttgctcatgtttttggttgttttgtttatatgtctt |
256 |
Q |
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| T |
21295904 |
ttcctttgctcatgtttttggttgttttatttatatatctt |
21295944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 461 - 541
Target Start/End: Original strand, 21208592 - 21208668
Alignment:
| Q |
461 |
aataaaccaaaaaatattacaaatgaaccgtttaatcaattaagtggacaacaaaaagtgaaatattgagtccgaacagtt |
541 |
Q |
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| T |
21208592 |
aataaaccaaaaaatat---aagtgaaccgtttaatcaattaagaggaaaac-aaatgtgagctattgagtcctaacagtt |
21208668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 69
Target Start/End: Original strand, 21150646 - 21150679
Alignment:
| Q |
36 |
tacaaataatgagcctgtcaatgagaatgcttct |
69 |
Q |
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| T |
21150646 |
tacaaataatgagcctgtcaaagagaatgcttct |
21150679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 458 - 511
Target Start/End: Original strand, 21178511 - 21178566
Alignment:
| Q |
458 |
atcaataaaccaaaaaat--attacaaatgaaccgtttaatcaattaagtggacaa |
511 |
Q |
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| T |
21178511 |
atcaataaaccaaaaaattgattacaaatgaacagtttcatcatttaagtgtacaa |
21178566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 465 - 515
Target Start/End: Complemental strand, 21645139 - 21645092
Alignment:
| Q |
465 |
aaccaaaaaatattacaaatgaaccgtttaatcaattaagtggacaacaaa |
515 |
Q |
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| T |
21645139 |
aaccaaaaaatat---aagtgaaccgtttaatcaattaagaggacaacaaa |
21645092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 465 - 515
Target Start/End: Complemental strand, 21658024 - 21657977
Alignment:
| Q |
465 |
aaccaaaaaatattacaaatgaaccgtttaatcaattaagtggacaacaaa |
515 |
Q |
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| T |
21658024 |
aaccaaaaaatat---aagtgaaccgtttaatcaattaagaggacaacaaa |
21657977 |
T |
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